Gene/Protein Characteristic Table for FLJ00098
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Product ID ORK05074
Accession No AK024493
Clone name as00098
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (4318 bp)
Predicted protein sequence (780 aa)
Source Human spleen
Rouge ID mFLJ00098 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 4318 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Features of the protein sequence
Description

Length: 780 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
BAB15783 0 100.0 FLJ00098 protei...
Homo sapiens
EAX08179 0 100.0 solute carrier ...
Homo sapiens
Q9Y666 0 100.0 Solute carrier ...
Homo sapiens
AAD39741 0 99.7 K-Cl cotranspor...
Homo sapiens
EAX08178 0 99.5 solute carrier ...
Homo sapiens
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against other entries from Kazusa human cDNA project (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AK024497 0 100.0 FLJ00105
AB033002 1.4e-200 69.9 KIAA1176
AK024494 1.4e-33 28.4 FLJ00100
AK024421 1.5e-33 28.4 FLJ00010
AK090458 1.2e-19 27.1 FLJ00379
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR004841 1 393 PF00324 Amino acid permease-associated region
ProfileScan IPR002293 117 294 PS50285 Amino acid/polyamine transporter I

Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length
SOSUI2 1 60 EIQGIPGAASGVFLENLWSTYAH 82 SECONDARY 23
2 108 YVLTDIAASFTLLVGIYFPSVTG 130 SECONDARY 23
3 153 ILAIVTTSFIYLSCIVLFGACIE 175 PRIMARY 23
4 190 NLVIGMLAWPSPWVIVIGSFFST 212 SECONDARY 23
5 252 TWALLLTVLICETGILIASLDSV 274 PRIMARY 23
6 278 LSMFFLMCYLFVNLACAVQTLLR 300 PRIMARY 23
7 319 GMSLCLALMFICSWYYALSAMLI 341 PRIMARY 23
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f AGGTTGTCCATAAAGAGGTTG
Primer_r AAACATCTGGGGGCACAAGTG
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles
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