hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/TIGRFAMs_HMM.LIB Sequence file: /cdna4/rodent/full/goal/mpg/mpg00643/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mFLJ00098 ( 1091 res) mpg00643 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- 2a30 2a30: K-Cl cotransporter 1946.2 0 1 2A0306 2A0306: amino acid transporter -264.0 0.25 1 2A0302 2A0302: arginine/ornithine antiporter -342.4 0.28 1 2A0310 2A0310: amino acid permease (yeast) -401.5 0.56 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- 2A0306 1/1 125 648 .. 1 451 [] -264.0 0.25 2A0310 1/1 198 671 .. 1 502 [] -401.5 0.56 2A0302 1/1 282 695 .. 1 507 [] -342.4 0.28 2a30 1/1 53 1091 .] 1 1171 [] 1946.2 0 Alignments of top-scoring domains: 2A0306: domain 1 of 1, from 125 to 648: score -264.0, E = 0.25 *->LrReLGlFDltlL.giGaiiGtGiFvvtGiaAgkaGGPAviLsFvlA G F + L+ + i+G F + ++g aG v+ sF++ mFLJ00098 125 ---RMGTFIGVYLpCLQNILGVILFLRLTWIVGAAG---VMESFLIV 165 GLtAl...fiALvYaEla..amlPvaGsvYtYayeAlGelvAFiiGWvli ++ ++ + ++A + + a+++ +P aG++Y + lG ++ G + mFLJ00098 166 AMCCTctmLTAISMSAIAtnGVVP-AGGSYYMISRSLGPEFGGAVGLCFY 214 leygVAvAavAvgwsg.Ylqef........................LeGf l + A A + +g ++ +l +++++ + ++ +++ ++ + G mFLJ00098 215 LGTTFAGAMYILGTIEiFLTYIspsaaifqaetadgeaaallnnmrVYGS 264 vGldLPavLtakPgdggGtFtvfNlPAllivlfltyil.....ylGakeS l L av + + ++ +N l+ v ++ +l+ y+G+ mFLJ00098 265 CALALMAVVVFV--GVK----YVNK--LALVFLACVVLsilaiYAGVIKT 306 gkv.NsIlvvL...............Kvlav..........LlFa..... ++++ +I v L ++++ +++ ++ K+ +v++++ ++ lF+++++ mFLJ00098 307 AFApPDIPVCLlgnrtlanrnfdtcaKMQVVsngtvttalwRLFCngssl 356 ...............alGaihfksnP.l..lvSNytp...Fm........ + + ++ +++ ++ G+++++s+ l++l S y+ ++ F ++++ ++ mFLJ00098 357 gatcdeyfaqnnvteIQGIPGVASGVfLdnLWSTYSDkgaFVekkgvssv 406 .......PmGfGgVlaatalvFfAFiG..Feavs.......taAEEvKnP + +++++P G+ Vl+ + F +G F v++ +++ +++ K++ mFLJ00098 407 pvseesrPGGLPYVLTDIMTYFTMLVGiyFPSVTgimagsnRSGD-LKDA 455 erdiPkaIilSLivvTllY....vlvaavilGavRADVPfrqlagseapl ++ iP + il + + +Y + vl a i G+v l + ++ mFLJ00098 456 QKSIPTGTILAIVTTSFIYlsciVLFGACIEGVV--------LRDKFGEA 497 slvkvsdlgqkiga.liitaGAVisiasvmlatlYgtsRvlFAmSRDGlL + + + +++ i +G +s+ ++ l l g R+l A++RDG + mFLJ00098 498 LQGNLVIGMLAWPSpWVIVIGSFFSTCGAGLQSLTGAPRLLQAIARDGII 547 PksLSkvHpktkT...PhvsilifsllaallAslvPlealaeltsigtLi P + v k++++P + l l++ + + l+ +a s+ +L+ mFLJ00098 548 P--FLQVFGHGKAngePTWALLLTALICETGILIASLDSVAPILSMFFLM 595 aFalvnVavii..LRrrrPdlqRAFkcPlvpVLpaLaAALLAVlllCiyL + vn a ++++L +r P + p + + ++ mFLJ00098 596 CYMFVNLACAVqtL-LRTPNWR-----------PRFK--------FYHWT 625 llnlgegttviflvwmllGsvfYfiY<-* l lg + l++m++ s Y ++ mFLJ00098 626 LSFLGMS---LCLALMFICSWYYALF 648 2A0310: domain 1 of 1, from 198 to 671: score -401.5, E = 0.56 *->KksLKqRHiqMIAlGGtIGTGLlVGt..GtaLatgGPaGlLIGYaiv +sL + GG+ G ++Gt+ a + G ++ Y+ mFLJ00098 198 SRSLGP------EFGGAVGLCFYLGTtfAGAMYILGTIEIFLTYISP 238 GsiiycviqslGEmatfyPvvsDaGsFatyasRFvdpslGFAvgynYllq ++ i+ + GE a ++ + +y+s mFLJ00098 239 SAAIFQAETADGEAAALLNNMR------VYGS------------------ 264 WlivlPlElvaasmtIqYWttdkVnpavwIaIFyvviviiNlfGVkgyGE ++l+l v++ ++Y + + +v+ mFLJ00098 265 --CALALMAVVVFVGVKYVNK----------LALVF-------------- 288 aEFwfssiKilaivGFiILsIilicGGGpnhtgyIGfrYWhdPGAFaggt la v + IL+I +G + AFa++ mFLJ00098 289 ----------LACVVLSILAI--YAGVI-KT-------------AFAPPD 312 i................................................. i+ ++++ +++ ++ + + ++++ ++ + ++++ + + ++ mFLJ00098 313 Ipvcllgnrtlanrnfdtcakmqvvsngtvttalwrlfcngsslgatcde 362 .................................................. +++ ++ ++ ++ ++ ++ ++ ++++ ++++ ++ + ++++ mFLJ00098 363 yfaqnnvteiqgipgvasgvfldnlwstysdkgafvekkgvssvpvsees 412 ...........gidGskGrFkGvvsvfVtAAFsFgGtElvaLt..agEaa ++++ + +++ ++ +++++ ++ + t a ++++g + mFLJ00098 413 rpgglpyvltdI---------MTYFTMLVGIYFPSVTGIMAGSnrSGDLK 453 NPRKsiPkAaKrtvwRIlvfYiltlfliGflVP.......YNDPrLlsss + KsiP + + ++Y+ ++l G+++ + +++++ L + mFLJ00098 454 DAQKSIPTGTILAIVTTSFIYLSCIVLFGACIEgvvlrdkFGE-ALQGNL 502 sssdskAaaSPFVIAI.qnhGikvklPhiiNAVILisVlSvaNSslYasS ++ A SP+VI I++ + +++ ++ sl + mFLJ00098 503 VIGML-AWPSPWVIVIgSFFSTCG----------------AGLQSLTGAP 535 RtLyaLAhqGlAP..KilayvDRrGrPlvaiivsslFGlLAFlavSkkea R+L+a A++G +P +++ +G P a+++++l + + l +S mFLJ00098 536 RLLQAIARDGIIPflQVFGHGKANGEPTWALLLTALICETGILIAS---- 581 eVFnWLlaiSglSglftWmsIclSHIRFRkAmkaQKDiiGRSldELpYKs + +++ +++ m+ +++ A+++Q + R + + mFLJ00098 582 --------LDSVAPILS-MFFLMCYMFVNLACAVQ--TLLRTPN-WRPRF 619 qtgpy.GsyYalffn.iLiliaqfyvafaPvgWeggkfsaksFFeaYlsl +++ +++s ++ ++ +L++i+ y a++ ++++ mFLJ00098 620 KFYHWtLSFLGMSLClALMFICSWYYALFAML-----------IAGC--- 655 PifivlYiGhKvYkrsdWtrliiklddiDLD<-* i Yi ++ + W D mFLJ00098 656 ---IYKYIEYRGAEK-EWG-----------D 671 2A0302: domain 1 of 1, from 282 to 695: score -342.4, E = 0.28 *->MseekdsSkKlGlfALtALVvgSM.iGsGIFsLPqnlAsvAgpGAvl +Kl l+ L+ +V++ i +G++ + A p + mFLJ00098 282 --------NKLALVFLACVVLSILaIYAGVIK-----TAFAPPDIP- 314 IGWiITGvGmlaLAf.vFanLatkkPeLdGGiyaYAreGFGpyiGFsSgW + G +LA++ F ++a + + G + A mFLJ00098 315 ----VCLLGNRTLANrNFDTCAKMQVV-SNGTVTTA-------------- 345 GYWlsawIGNVaYavllfSaLgyFfPtPELRlFgsgnpvpsIl..gaSvL l ++ N + +l + ++f + + + +++++aS + mFLJ00098 346 ---LWRLFCN---GSSLGATCDEYFA-------QNNVTEIQGIpgVASGV 382 ....lWvvt.....flvlrGvrqA.........AfINtitTiaKliPlfl ++lW+ ++++ f+ +Gv++++ ++++++++ +P +l mFLJ00098 383 fldnLWSTYsdkgaFVEKKGVSSVpvseesrpgG-----------LPYVL 421 FiIigwfwFkldlFtadfWghdvpsLGSdvfsQVkntMlvTLWvFiGIEG + I + f ++ + +g ++ mFLJ00098 422 TDIMTYFTMLVGIYFPSVTGIMAG-------------------------- 445 AvvsSgrAknPksDVGkATvlGllgaLvIYiliTlL....slGvltqqeL + Sg k +++ + T+l+ +++ IY++ +L + + Gv+ +++ mFLJ00098 446 -SNRSGDLKDAQKSIPTGTILAIVTTSFIYLSCIVLfgacIEGVVLRDKF 494 AnlpnPSmAavlehivGkWGavLIslGLiiSvLGslLSWtllvAEipflA + + + + + +W v+ s +S +G+ L l+ A ++ A mFLJ00098 495 GEALQGNLVIGMLAWPSPWVIVIGSF---FSTCGAGLQ-SLTGAPRLLQA 540 .AkdGlFP..kiFgrvNkkgaPsvaLllTnilvQlflllilltnsagsls A+dG +P +Fg ++g P+ aLllT+++ +l+ l mFLJ00098 541 iARDGIIPflQVFGHGKANGEPTWALLLTALICETGILIASLD------- 583 saYntllsLAtvmiLvPYllSaayLlklskvgnGitHPHAGetypkkGPE + + + L +Y+++ ++ ++ ++ t+ mFLJ00098 584 ----SVAPILSMFFLMCYMFVNLACAVQTLLR----------TPNW---- 615 iepiknrkalivGviAvvYsvwLlYAAGlkyLLlgfIlyapGiifYgrar p+ + + ++++ +++L + y L+ ++l a i+ Y+ r mFLJ00098 616 -RPRFKFYHWTLSFLGMSLCLALMFICSWYYALF-AMLIAGCIYKYIEYR 663 kergkdkhvfnkkEi..liatiivilAviAiilLvsGsIsI<-* + kE++++i ++ + +A A ++ G mFLJ00098 664 G--AE-------KEWgdGIRGLSLNAARYALLRVEHGPPHT 695 2a30: domain 1 of 1, from 53 to 1091: score 1946.2, E = 0 *->ntvdavPriehyrntegqeerklnrpsleelhdllGFdkvvsllgpl n+++ +P+i++ + ++ +++n++++ee++d ++v+sll++l mFLJ00098 53 NPRENSPFINNVEVERESYFEGKNMALFEEEMDSN--PMVSSLLNKL 97 adytnngqeskeheeaEeaeetkekppaeavkfGwvkGVlvpCLlNIwGV a+ytn+ q+ e Ee e++++++ +a+++G++ GV++pCL+NI+GV mFLJ00098 98 ANYTNLSQGVVE---HEEDEDSRRRE-VKAPRMGTFIGVYLPCLQNILGV 143 iLFLRLsWIVGqAGIglslviillstvvTtiTglSmSAIATNGvVkGGGa iLFLRL+WIVG AG+++s++i+++++++T++T++SmSAIATNGvV++GG+ mFLJ00098 144 ILFLRLTWIVGAAGVMESFLIVAMCCTCTMLTAISMSAIATNGVVPAGGS 193 YYLISRSLGPEfGgSIGLiFafANAVAvAMYvvGfaEtvldYivPaaaLl YY+ISRSLGPEfGg++GL+F++++++A+AMY++G++E++l+Yi P+aa++ mFLJ00098 194 YYMISRSLGPEFGGAVGLCFYLGTTFAGAMYILGTIEIFLTYISPSAAIF 243 revnGtdnglkimvdpiNDiRIiGtvtvvvLlgIsfaGmewenKaqvlfL ++ + + +++++ +N++R++G++++ +++ ++f+G++++nK +++fL mFLJ00098 244 QA----ETADGEAAALLNNMRVYGSCALALMAVVVFVGVKYVNKLALVFL 289 vivllSilnivvGtiipasdekpakGffglkaeiFsenqfDvCaKt.evd ++v+lSil+i++G+i+ a++ +p+ +++ l+++++++++fD CaK+++v mFLJ00098 290 ACVVLSILAIYAGVIKTAFA-PPDIPVCLLGNRTLANRNFDTCAKMqVVS 338 NeTVttrLWglFCsSrllnatCDeyfsannvTfvpgirgaeggvikENLW N TVtt LW lFC+ l atCDeyf +nnvT+++gi+g ++gv +NLW mFLJ00098 339 NGTVTTALWRLFCNGSSLGATCDEYFAQNNVTEIQGIPGVASGVFLDNLW 388 SaYLeKGeivEkrglpStdvlgdlve...lYvvaDintsFFslfgIFFPs S Y +KG vEk+g+ S+ v +++ ++ +Yv+ Di t+F+ l+gI+FPs mFLJ00098 389 STYSDKGAFVEKKGVSSVPVSEESRPgglPYVLTDIMTYFTMLVGIYFPS 438 vTGIlAGANiSGDLkDpqkAIPkGTLLAIltTtvvYlssvvlfGACvvRd vTGI+AG+N+SGDLkD+qk+IP+GT+LAI+tT++ Yls vlfGAC++++ mFLJ00098 439 VTGIMAGSNRSGDLKDAQKSIPTGTILAIVTTSFIYLSCIVLFGACIEGV 488 AsGdlnDtlvtggltnctslACklgfdfseCakntCeYGLmnnlqvmslv +++d++++++ +nl+ + l+ mFLJ00098 489 VLRDKFGEALQ------------------------------GNLVIGMLA 508 spfpplIvaGiFsATLssALaSLvsAPrllQALckDnIyPlLqfFgkGyG +p+p++Iv+G+F++T++++L+SL++APrllQA+++D I+P+Lq+Fg+G++ mFLJ00098 509 WPSPWVIVIGSFFSTCGAGLQSLTGAPRLLQAIARDGIIPFLQVFGHGKA 558 kngEPlrayLLTffIallfiLIAeLntIAPIiSnFFLasYaliNfScFha + gEP++a+LLT++I++ +iLIA+L+ +API+S+FFL++Y+++N++c+++ mFLJ00098 559 N-GEPTWALLLTALICETGILIASLDSVAPILSMFFLMCYMFVNLACAVQ 607 sLlrsPgWRPrFrYYnwwlSLlGaiLCvaiMFlisWwaALvaivIallLY +Llr+P+WRPrF++Y+w+lS+lG++LC+a+MF++sW++AL a++Ia+ +Y mFLJ00098 608 TLLRTPNWRPRFKFYHWTLSFLGMSLCLALMFICSWYYALFAMLIAGCIY 657 kYVeYKkpdvnWGsstqalsYslALssllrLeevedHvKNwRPQcLVLtg kY+eY++++++WG+++++ls+++A+++llr e +++H+KNwRPQ LV++ mFLJ00098 658 KYIEYRGAEKEWGDGIRGLSLNAARYALLRVEHGPPHTKNWRPQVLVMLN 707 ppGkLednvvcrPaLldlasqlkkkgkGLmIvGsVlqGprkervkEasaa ++ ++ v++P+Ll+++sqlk +gkGL+IvGsVl+G++++++ Ea++a mFLJ00098 708 LD---SEQCVKHPRLLSFTSQLK-AGKGLTIVGSVLEGTYLDKHVEAQRA 753 eekiqtwLekrKvkaFyavVvAedlreGvrhLiQasGLGrmkPNtlVmGy ee i+ ++ ++K k+F++ Vv+++lr+G++hLiQ++GLG+mk+Nt++m + mFLJ00098 754 EENIRSLMSAEKTKGFCQLVVSSNLRDGASHLIQSAGLGGMKHNTVLMAW 803 kkdWrqaedpraletYigilhdafdahlaVvvvrvsegldisavlqaqee ++ W+ a+ p +++++++++d+++ah a++v+++++ ++ + mFLJ00098 804 PEAWKEADNPFSWKNFVDTVRDTTAAHQALLVAKNIDLFPQN-------- 845 lsssqekrvrlkdvivdadssedsiqpkfkksseltitkkekekdkkesk mFLJ00098 - -------------------------------------------------- - qldmhkeikyptaslneldqkllqassqfqkkQgkGtIDVWWLvdDGGLt q++++ G+IDVWW+v+DGG++ mFLJ00098 846 -----------------------------QERFSDGNIDVWWIVHDGGML 866 LLLPYLLttkkkWkkCKiRiFvgaqkddrseqekkdlatLLykfRidfev +LLP+LL+++k+W+kC++RiF++aq dd+s+q+kkdl +Ly++Ri +ev mFLJ00098 867 MLLPFLLRQHKVWRKCRMRIFTVAQVDDNSIQMKKDLQMFLYHLRISAEV 916 ivVlmkssDInaktypqkesveaFeemierfrleknekdreaqlvsdpns +vV+m + DI+a ty++++++e++++m++++ l+kne++reaql+ d+n+ mFLJ00098 917 EVVEMVENDISAFTYEKTLMMEQRSQMLKQMQLSKNEREREAQLIHDRNT 966 aLRLeSlgsdeedEsetd.eKvklkrekPwkitdeekgdskssegfkdll a + + + ++Kv+++++k + i+++ + + + gfkdl+ mFLJ00098 967 ASHTTATARTQ---APPTpDKVQMTWTKEKLIAEKHRNKDTGPSGFKDLF 1013 smkPdlqsnrrksyrqvRLNEvlleySrdAaLvvlsLPvprkgsipdelY s+kPd qsn+r+++++v+LN v+l++S dA Lv+l++P+p+k + +de+Y mFLJ00098 1014 SLKPD-QSNVRRMHTAVKLNGVVLNKSQDAQLVLLNMPGPPKSRQGDENY 1062 MawLEvLsedLPpvLLVRGnhrnVlTfYS<-* M++LEvL+e+L +vLLVRG++r+V+T+YS mFLJ00098 1063 MEFLEVLTEGLNRVLLVRGGGREVITIYS 1091 //