ROUGE

Gene/Protein Characteristic Table for mFLJ00080

Link to : NEDO \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	AY167043
Description :	rhomboid-like protein 6.
Clone Name :	mkg00207 [Vector Info]
Source :	Mouse adult kidney

Features of the cloned DNA sequence	Description

Length: 3599 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 850 bp

Genome contig ID gi65527427r_116319263
PolyA signal sequence
(ATTAAA,-20)
+----*----+----*----+----*----+----
TGATGTCTCAAGTTTATTAAATGACATTCTTTATT
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AAAATGCTGCCTTTTGCCTTAGACCTCCAAGAGAAGGAAAGCTAGAACTT

Genomic structure deduced by Blast search against draft genome sequences
Comparison with the corresponding KIAA cDNA.

KIAA Alignment based on:

FLJ00080 DNA sequence, AA sequence

KIAA	Alignment based on:
FLJ00080	DNA sequence, AA sequence

Features of the protein sequence	Description

Coding region: 101..2749
Length: 882 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
Q80WQ6	100.0	Rhomboid family...	Mus musculus
BAC26163	99.9	unnamed protein...	Mus musculus
NP_001005498	91.6	rhomboid, veinl...	Homo sapiens
Q00M95	91.8	Rhomboid family...	Canis lupus fam...
AAS77567	91.4	rhomboid veinle...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	ROUGE_ID
AK220566	1.1e-26	47.0	mKIAA4242

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR002610 675 818 PF01694 Rhomboid-like protein

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR002610	675	818	PF01694	Rhomboid-like protein

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

SOSUI 433 455 YWLTFVHIIITLLVICTYGIAPV

683 705 IWLSLFLHAGIVHCLVSVVFQMT

715 737 GWHRISIIFILSGITGNLASAIF

747 769 AGSQFGLLACLFVELFQSWQLLE

772 794 WKAFFNLSAIVLFLFICGLLPWI

799 820 HIFGFLSGMLLAFAFLPYITFG

829 851 ALILVSLLVFAGLFASLVLWLYI

Method	From	To	amino acid sequence
SOSUI	433	455	YWLTFVHIIITLLVICTYGIAPV
683	705	IWLSLFLHAGIVHCLVSVVFQMT
715	737	GWHRISIIFILSGITGNLASAIF
747	769	AGSQFGLLACLFVELFQSWQLLE
772	794	WKAFFNLSAIVLFLFICGLLPWI
799	820	HIFGFLSGMLLAFAFLPYITFG
829	851	ALILVSLLVFAGLFASLVLWLYI

How to obtain mKIAA clone(s) Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	850 bp
Genome contig ID	gi65527427r_116319263
PolyA signal sequence (ATTAAA,-20)	+--------+--------+----*----+---- TGATGTCTCAAGTTTATTAAATGACATTCTTTATT
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* AAAATGCTGCCTTTTGCCTTAGACCTCCAAGAGAAGGAAAGCTAGAACTT

Gene/Protein Characteristic Table for mFLJ00080

Features of the cloned DNA sequence

Features of the protein sequence