FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mFLJ00080.ptfa, 882 aa
 vs ./tmplib.26680 library

1768135 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 5.9121+/-0.00608; mu= 14.5768+/- 0.407
 mean_var=176.7225+/-41.713, 0's: 0 Z-trim: 2  B-trim: 0 in 0/36
 Lambda= 0.0965

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA4242  ( 345 res)   mth01175                   ( 345)  742  115 1.1e-26


>>mKIAA4242  ( 345 res)   mth01175                        (345 aa)
 initn: 570 init1: 165 opt: 742  Z-score: 571.2  bits: 115.5 E(): 1.1e-26
Smith-Waterman score: 742;  46.996% identity (51.351% ungapped) in 283 aa overlap (70-336:71-345)

      40        50        60        70        80           90      
mFLJ00 APLDARAGLSSSIVPTMASADKNGSNLPSVSGSRLQSRKPPNLSITIP---PPESQAPGE
                                     : : :: .::: :.. ::   :: .. :. 
mKIAA4 WRPVRVVTQHNLHSQACLTAPGTMSEARRDSTSSLQRKKPPWLKLDIPAAVPPAAEEPSF
               50        60        70        80        90       100

        100       110       120         130       140       150    
mFLJ00 QDSMLPERRKNPAYLKSVSLQEPRGRWQ--EGAEKRPGFRRQASLSQSIRKSTAQWFGVS
          . : ::.  :.:.:::.    .:    .   .:  ..::.:..:.::..::.:::::
mKIAA4 ---LQPLRRQ--AFLRSVSMPAETARVPSPHHEPRRLVLQRQTSITQTIRRGTADWFGVS
                   110       120       130       140       150     

          160       170       180       190       200              
mFLJ00 GDWEGKRQNWHRRSLHHCSVHYGRLKASCQRELELPSQEVPSFQGTESPKP-----CK--
        : ..  :.:.:.:..::: .::.:: .  :::.::::.  :. .::.: :     :.  
mKIAA4 KDSDST-QKWQRKSIRHCSQRYGKLKPQVIRELDLPSQDNVSLTSTETPPPLYVGPCQLG
         160        170       180       190       200       210    

       210       220        230       240       250       260      
mFLJ00 MPKIVDPLARGRAFRHPDEV-DRPHAAHPPLTPGVLSLTSFTSVRSGYSHLPRR-KRISV
       : ::.::::::::::  :.. :   : : :.:::. :: ::.: :::...:::: :: ::
mKIAA4 MQKIIDPLARGRAFRMADDTADGLSAPHTPVTPGAASLCSFSSSRSGFNRLPRRRKRESV
          220       230       240       250       260       270    

         270       280       290       300       310       320     
mFLJ00 AHMSFQAAAALLKGRSVLDATGQRCRHVKRSFAYPSFLEEDAVDGADTFDSSFFS--KEE
       :.:::.:::::.::::. :.: .: .  .:::.  :::::: ::  : .:.:::.  .. 
mKIAA4 AKMSFRAAAALVKGRSIRDGTLRRGQ--RRSFTPASFLEEDMVDFPDELDTSFFARVRRA
          280       290       300         310       320       330  

           330       340       350       360       370       380   
mFLJ00 MSSMPDDVFESPPLSASYFRGVPHSASPVSPDGVHIPLKEYSGGRALGPGTQRGKRIASK
        .  :. .  .::                                               
mKIAA4 WGVAPSPLSLDPP                                               
            340                                                    




882 residues in 1 query   sequences
1768135 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:06:42 2006 done: Mon Mar 27 10:06:43 2006
 Scan time:  0.930 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]