Miyakogusa Predicted Gene

chr1.CM0295.1160.nc
Related links:
Predicted Sequence Links:
Genome Sequence: CM0295
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A7Q1J4_VITVI 901 87.0 94.4 (tr|A7Q1J4) Chromosome chr7 scaffold_44, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00028489001 PE=4 SV=1
TAIR_pep AT2G20330.1 832 79.3 91.3 | Symbols: | transducin family protein / WD-40 repeat family protein | chr2:8779969-8782599 REVERSE
Medicago IMGA|AC146819_25.4 965 76.7 83.2 WD40-like chr07_pseudomolecule_IMGAG_V2 26724055-26718505 E EGN_Mt071002 20080227
Soybean Glyma19g35280.1 946 91.2 96.7  
Lotus Consensus KMC003765A_C01 252 98.5 98.5 KMC003765A_c01
3' Unigene KMC003765A_C01 712 98.3 98.3 KMC003765A_c01
5' Unigene R_KMC000168A_C01 690 95.1 95.1 R_KMC000168A_c01
A list of protein families, domains and functional sites (searches in InterPro)
chr1.CM0295.1160.nc length: 612 aa.
IPR001680 WD-40 repeat
method AccNumber shortName E-value location
BlastProDom PD000018 Q9SK69_ARATH_Q9SK69; 1e-07 338-370
FPrintScan PR00320 GPROTEINBRPT 3.2e-07 262-276
310-324
356-370
HMMPfam PF00400 WD40 9.2e-06 135-173
236-275
286-323
331-369
HMMSmart SM00320 no description 8e-05 134-173
183-220
232-275
285-323
330-369
ProfileScan PS50082 WD_REPEATS_2 14.485 141-182
242-284
337-378
ProfileScan PS50294 WD_REPEATS_REGION 26.841 141-378
ScanRegExp PS00678 WD_REPEATS_1 NA 262-276
310-324
IPR011046 WD40-like
superfamily SSF50978 WD40-repeat 1.6e-52 1-469
no_ID  
Gene3D 2.130.10.10 no description 4.1e-47 82-456
HMMPanther PTHR16017 GASTRULATION 3.4e-116 74-611
Seg seg seg NA 51-64
67-99
104-109
115-126
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr1.CM0295.1160.nc 612 0.335 0.108 0.010 0.683 _ 4
Wolf-PSORT
chr1.CM0295.1160.nc	nucl 13
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr1.CM0295.1160.nc Not targeted -73.749 0 -22.316 97.40% -51.433