Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003765A_C01 KMC003765A_c01
(407 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN05533.1| putative WD domain containing protein [Oryza sati... 74 3e-13
ref|NP_179623.1| putative WD-40 repeat protein; protein id: At2g... 69 1e-11
gb|EAA03327.1| agCP7572 [Anopheles gambiae str. PEST] 54 6e-07
gb|EAA12605.1| agCP11167 [Anopheles gambiae str. PEST] 54 6e-07
ref|XP_215503.1| similar to hypothetical protein FLJ10233 [Homo ... 49 1e-05
>gb|AAN05533.1| putative WD domain containing protein [Oryza sativa (japonica
cultivar-group)]
Length = 646
Score = 74.3 bits (181), Expect = 3e-13
Identities = 34/44 (77%), Positives = 41/44 (92%)
Frame = -1
Query: 407 EDPREAILK*ADVAKKDPKYIAPAYAETQPEPVYAKSDSEDEEK 276
EDPREAILK AD A+KDPK+IAPAY++TQP+PV+A+SDSE EEK
Sbjct: 602 EDPREAILKYADAAEKDPKFIAPAYSQTQPKPVFAESDSEGEEK 645
>ref|NP_179623.1| putative WD-40 repeat protein; protein id: At2g20330.1, supported
by cDNA: gi_13605894, supported by cDNA: gi_16226752
[Arabidopsis thaliana] gi|25411973|pir||H84587 probable
WD-40 repeat protein [imported] - Arabidopsis thaliana
gi|4512702|gb|AAD21755.1| putative WD-40 repeat protein
[Arabidopsis thaliana]
gi|13605895|gb|AAK32933.1|AF367346_1 At2g20330/F11A3.12
[Arabidopsis thaliana]
gi|16226753|gb|AAL16252.1|AF428322_1 At2g20330/F11A3.12
[Arabidopsis thaliana] gi|22137162|gb|AAM91426.1|
At2g20330/F11A3.12 [Arabidopsis thaliana]
Length = 648
Score = 68.9 bits (167), Expect = 1e-11
Identities = 31/43 (72%), Positives = 39/43 (90%)
Frame = -1
Query: 407 EDPREAILK*ADVAKKDPKYIAPAYAETQPEPVYAKSDSEDEE 279
EDPREAILK A+VA KDPK+IAPAY++TQP+ ++AKSD E+EE
Sbjct: 601 EDPREAILKYAEVAVKDPKFIAPAYSQTQPKTIFAKSDDEEEE 643
>gb|EAA03327.1| agCP7572 [Anopheles gambiae str. PEST]
Length = 630
Score = 53.5 bits (127), Expect = 6e-07
Identities = 24/44 (54%), Positives = 33/44 (74%)
Frame = -1
Query: 407 EDPREAILK*ADVAKKDPKYIAPAYAETQPEPVYAKSDSEDEEK 276
+DPREAILK A A ++P +IAPAYA+TQP+P++ D D +K
Sbjct: 583 QDPREAILKYAKEAAENPYWIAPAYAKTQPKPIFNSEDEPDAKK 626
>gb|EAA12605.1| agCP11167 [Anopheles gambiae str. PEST]
Length = 392
Score = 53.5 bits (127), Expect = 6e-07
Identities = 24/44 (54%), Positives = 33/44 (74%)
Frame = -1
Query: 407 EDPREAILK*ADVAKKDPKYIAPAYAETQPEPVYAKSDSEDEEK 276
+DPREAILK A A ++P +IAPAYA+TQP+P++ D D +K
Sbjct: 345 QDPREAILKYAKEAAENPYWIAPAYAKTQPKPIFNSEDEPDAKK 388
>ref|XP_215503.1| similar to hypothetical protein FLJ10233 [Homo sapiens] [Rattus
norvegicus]
Length = 229
Score = 48.9 bits (115), Expect = 1e-05
Identities = 20/42 (47%), Positives = 35/42 (82%)
Frame = -1
Query: 404 DPREAILK*ADVAKKDPKYIAPAYAETQPEPVYAKSDSEDEE 279
+PREAIL+ A A+ +P +++PAY++TQP+ ++A+ +S+DEE
Sbjct: 176 NPREAILRHAKAAEDNPYWVSPAYSKTQPKTMFAQVESDDEE 217
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 354,036,979
Number of Sequences: 1393205
Number of extensions: 7660425
Number of successful extensions: 20262
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 19342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20240
length of database: 448,689,247
effective HSP length: 111
effective length of database: 294,043,492
effective search space used: 7057043808
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
