database | Accession | Score | Iden (%) |
Posi (%) |
Definition |
---|---|---|---|---|---|
TrEMBL | A9PGS4_POPTR | 188 | 86.5 | 95.8 | (tr|A9PGS4) Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 |
TAIR_pep | AT2G37340.1 | 174 | 80.0 | 91.6 | | Symbols: ATRSZ33, RSZ33 | RSZ33 (ARGININE/SERINE-RICH ZINC KNUCKLE-CONTAINING PROTEIN 33); nucleic acid binding / nucleotide binding / zinc ion binding | chr2:15677451-15679410 REVERSE |
Medicago | IMGA|AC134522_50.4 | 47.0 | 57.9 | 65.8 | RNA-binding region RNP-1 (RNA recognition motif) chr01_pseudomolecule_IMGAG_V2 20741104-20734809 E EGN_Mt071002 20080227 |
Soybean | Glyma03g33260.1 | 198 | 91.7 | 97.9 | |
Lotus Consensus | KMC003010A_C01 | 567 | 99.3 | 99.3 | KMC003010A_c01 |
3' Unigene | KMC003010A_C01 | 963 | 97.9 | 97.9 | KMC003010A_c01 |
5' Unigene | R_KMC001159A_C01 | 353 | 100.0 | 100.0 | R_KMC001159A_c01 |
chr1.CM0033.10.nd | length: 314 aa. | |||
IPR000504 | RNA-binding region RNP-1 (RNA recognition motif) | |||
---|---|---|---|---|
method | AccNumber | shortName | E-value | location |
Molecular Function | GO:0003676 | nucleic acid binding | ||
HMMPfam | PF00076 | RRM_1 | 1.4e-06 | 3-34 |
ProfileScan | PS50102 | RRM | 8.791 | 1-39 |
IPR001878 | Zinc finger, CCHC-type | |||
Molecular Function | GO:0003676 | nucleic acid binding | ||
Molecular Function | GO:0008270 | zinc ion binding | ||
FPrintScan | PR00939 | C2HCZNFINGER | 0.057 | 57-66 66-74 |
HMMPfam | PF00098 | zf-CCHC | 5.1e-05 | 57-74 79-96 |
HMMSmart | SM00343 | no description | 0.004 | 58-74 80-96 |
ProfileScan | PS50158 | ZF_CCHC | 10.180 | 80-96 58-73 |
no_ID | ||||
Gene3D | 3.30.70.330 | no description | 0.0017 | 6-53 |
Gene3D | 4.10.60.10 | no description | 4.6e-08 | 56-98 |
HMMPanther | PTHR10548 | ARGININE/SERINE-RICH | 3.6e-22 | 6-136 |
Seg | seg | seg | NA | 102-137 209-220 281-303 |
superfamily | SSF54928 | RNA-binding | 2e-07 | 3-45 |
superfamily | SSF57756 | Retrovirus | 7.1e-12 | 46-100 |
Name | Length | cTP | mTP | SP | other | Loc. | RC |
---|---|---|---|---|---|---|---|
chr1.CM0033.10.nd | 314 | 0.066 | 0.116 | 0.031 | 0.962 | _ | 1 |
chr1.CM0033.10.nd nucl 9, chlo 2, plas 2
entry_id | prediction | score | sppta | spptna | fp | profile |
---|---|---|---|---|---|---|
chr1.CM0033.10.nd | Not targeted | -40.898 | -0.187 | -9.027 | 55.43% | -31.684 |