Miyakogusa Predicted Gene

chr1.CM0033.10.nd
Related links:
Predicted Sequence Links:
Genome Sequence: CM0033
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
TrEMBL A9PGS4_POPTR 188 86.5 95.8 (tr|A9PGS4) Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1
TAIR_pep AT2G37340.1 174 80.0 91.6 | Symbols: ATRSZ33, RSZ33 | RSZ33 (ARGININE/SERINE-RICH ZINC KNUCKLE-CONTAINING PROTEIN 33); nucleic acid binding / nucleotide binding / zinc ion binding | chr2:15677451-15679410 REVERSE
Medicago IMGA|AC134522_50.4 47.0 57.9 65.8 RNA-binding region RNP-1 (RNA recognition motif) chr01_pseudomolecule_IMGAG_V2 20741104-20734809 E EGN_Mt071002 20080227
Soybean Glyma03g33260.1 198 91.7 97.9  
Lotus Consensus KMC003010A_C01 567 99.3 99.3 KMC003010A_c01
3' Unigene KMC003010A_C01 963 97.9 97.9 KMC003010A_c01
5' Unigene R_KMC001159A_C01 353 100.0 100.0 R_KMC001159A_c01
A list of protein families, domains and functional sites (searches in InterPro)
chr1.CM0033.10.nd length: 314 aa.
IPR000504 RNA-binding region RNP-1 (RNA recognition motif)
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00076 RRM_1 1.4e-06 3-34
ProfileScan PS50102 RRM 8.791 1-39
IPR001878 Zinc finger, CCHC-type
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0008270 zinc ion binding    
FPrintScan PR00939 C2HCZNFINGER 0.057 57-66
66-74
HMMPfam PF00098 zf-CCHC 5.1e-05 57-74
79-96
HMMSmart SM00343 no description 0.004 58-74
80-96
ProfileScan PS50158 ZF_CCHC 10.180 80-96
58-73
no_ID  
Gene3D 3.30.70.330 no description 0.0017 6-53
Gene3D 4.10.60.10 no description 4.6e-08 56-98
HMMPanther PTHR10548 ARGININE/SERINE-RICH 3.6e-22 6-136
Seg seg seg NA 102-137
209-220
281-303
superfamily SSF54928 RNA-binding 2e-07 3-45
superfamily SSF57756 Retrovirus 7.1e-12 46-100
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr1.CM0033.10.nd 314 0.066 0.116 0.031 0.962 _ 1
Wolf-PSORT
chr1.CM0033.10.nd	nucl 9, chlo 2, plas 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr1.CM0033.10.nd Not targeted -40.898 -0.187 -9.027 55.43% -31.684