Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003010A_C01 KMC003010A_c01
(536 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC03605.1| splicing factor RSZ33 [Arabidopsis thaliana] 35 0.57
ref|NP_181271.2| unknown protein; protein id: At2g37340.1, suppo... 35 0.57
pir||E84791 hypothetical protein At2g37340 [imported] - Arabidop... 35 0.57
ref|XP_131139.2| similar to one twenty two protein [Homo sapiens... 35 0.75
gb|AAH44265.1| Similar to splicing factor, arginine/serine-rich ... 34 0.98
>emb|CAC03605.1| splicing factor RSZ33 [Arabidopsis thaliana]
Length = 290
Score = 35.0 bits (79), Expect = 0.57
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = -2
Query: 307 DDRSPIDDDDGNHRRLPRGSESP 239
+DRSP+DDD +R PRGSESP
Sbjct: 268 EDRSPVDDDYEPNRTSPRGSESP 290
>ref|NP_181271.2| unknown protein; protein id: At2g37340.1, supported by cDNA:
gi_18252178 [Arabidopsis thaliana]
gi|18252179|gb|AAL61922.1| unknown protein [Arabidopsis
thaliana] gi|21386957|gb|AAM47882.1| unknown protein
[Arabidopsis thaliana]
Length = 290
Score = 35.0 bits (79), Expect = 0.57
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = -2
Query: 307 DDRSPIDDDDGNHRRLPRGSESP 239
+DRSP+DDD +R PRGSESP
Sbjct: 268 EDRSPVDDDYEPNRTSPRGSESP 290
>pir||E84791 hypothetical protein At2g37340 [imported] - Arabidopsis thaliana
gi|4056488|gb|AAC98054.1| unknown protein [Arabidopsis
thaliana]
Length = 249
Score = 35.0 bits (79), Expect = 0.57
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = -2
Query: 307 DDRSPIDDDDGNHRRLPRGSESP 239
+DRSP+DDD +R PRGSESP
Sbjct: 227 EDRSPVDDDYEPNRTSPRGSESP 249
>ref|XP_131139.2| similar to one twenty two protein [Homo sapiens] [Mus musculus]
Length = 962
Score = 34.7 bits (78), Expect = 0.75
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Frame = -1
Query: 506 SPDRASPQKRGDSSPAEDGLVTQQDGSDYSNGHRDRSR-----SPASPVRDREGSLKANG 342
SP+ P+K+ +P+ D D N DRS +SPVRDR GSL+
Sbjct: 655 SPESERPRKQRHCTPSPDRSPELSSNRDRYNSDNDRSSRLLLLERSSPVRDRRGSLE--- 711
Query: 341 RSQSPGRSPRD 309
+SQS R ++
Sbjct: 712 KSQSDKRDRKN 722
>gb|AAH44265.1| Similar to splicing factor, arginine/serine-rich 6 [Xenopus laevis]
Length = 660
Score = 34.3 bits (77), Expect = 0.98
Identities = 22/71 (30%), Positives = 34/71 (46%)
Frame = -1
Query: 530 SKTRKHSLSPDRASPQKRGDSSPAEDGLVTQQDGSDYSNGHRDRSRSPASPVRDREGSLK 351
S+ KH S R+ ++ SS ++ ++ S S R+RSRS + R+R GS
Sbjct: 475 SRQGKHERSDSRSKSKRERSSSRSKS---KRERSSSRSKSKRERSRSRSKSKRERSGSRS 531
Query: 350 ANGRSQSPGRS 318
R +S RS
Sbjct: 532 KGKRERSGSRS 542
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 488,441,174
Number of Sequences: 1393205
Number of extensions: 10877433
Number of successful extensions: 34962
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 33129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34831
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
