Miyakogusa Predicted Gene

chr1.CM0033.10.nd

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr1.CM0033.10.nd + phase: 0 /partial
         (314 letters)

Database: Medicago_aa2.0 
           38,834 sequences; 10,231,785 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC134522_50.4 RNA-binding region RNP-1 (RNA recognition mot...    47   1e-05
IMGA|AC146719_31.4 Zinc finger, CCHC-type; Peptidase aspartic, a...    43   1e-04
IMGA|CU459033_21.4 Zinc finger, CCHC-type chr05_pseudomolecule_I...    42   4e-04
IMGA|AC146631_58.4 Zinc finger, CCHC-type; Peptidase aspartic, a...    41   5e-04
IMGA|AC186046_39.4 RNA-binding region RNP-1 (RNA recognition mot...    41   8e-04

>IMGA|AC134522_50.4 RNA-binding region RNP-1 (RNA recognition motif)
           chr01_pseudomolecule_IMGAG_V2 20741104-20734809 E
           EGN_Mt071002 20080227
          Length = 316

 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/38 (57%), Positives = 25/38 (65%)

Query: 3   GKIFVEFSDPRDADDARYNLDGRDVEGSRIVVEFAKGG 40
           G  FVEF D RDA DA Y  DG D +G R++VE A GG
Sbjct: 77  GYAFVEFEDARDAQDAIYYRDGYDFDGYRLLVELAHGG 114


>IMGA|AC146719_31.4 Zinc finger, CCHC-type; Peptidase aspartic,
           active site; Retrotransposon gag protein
           chr01_pseudomolecule_IMGAG_V2 14005604-14003010 H
           EGN_Mt071002 20080227
          Length = 454

 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 58  RCFNCGLDGHWARDCKAGDWKNKCYRCGDRGHVERNCKNSPKKT 101
           +CF CG  GH   DCK GD    CY C + GH+   C   PKK 
Sbjct: 276 KCFRCGQKGHTLADCKRGD--VVCYNCNEEGHISSQC-TQPKKV 316


>IMGA|CU459033_21.4 Zinc finger, CCHC-type
           chr05_pseudomolecule_IMGAG_V2 31122979-31130318 E
           EGN_Mt071002 20080227
          Length = 636

 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 14/55 (25%)

Query: 59  CFNCGLDGHWARDCKAGD-----WK---------NKCYRCGDRGHVERNCKNSPK 99
           C+ CG  GH+AR+C +       W+         + CYRCG+ GH  R C +S K
Sbjct: 432 CYKCGEQGHFARECSSSVKASSRWQPENTDPATPSSCYRCGEEGHFSRECSSSVK 486


>IMGA|AC146631_58.4 Zinc finger, CCHC-type; Peptidase aspartic,
           active site chr04_pseudomolecule_IMGAG_V2
           9893051-9895126 E EGN_Mt071002 20080227
          Length = 634

 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 30/72 (41%), Gaps = 20/72 (27%)

Query: 49  GRGPPPGSGRCFNCGLDGHWARDCK--------------AGDWKN-----KCYRCGDRGH 89
           G  P     +CF CG  GH+A DCK              A D +       CY CG++GH
Sbjct: 43  GSRPSLADVKCFKCGTLGHYANDCKNDLNCHKCGKAGHKAADCRGVAREITCYNCGEKGH 102

Query: 90  VERNCKNSPKKT 101
           +   C   PKK 
Sbjct: 103 ISTKC-TKPKKA 113


>IMGA|AC186046_39.4 RNA-binding region RNP-1 (RNA recognition
           motif); Zinc finger, CCHC-type; Peptidyl-prolyl
           cis-trans isomerase, cyclophilin type
           chr06_pseudomolecule_IMGAG_V2 4533454-4540692 E
           EGN_Mt071002 20080227
          Length = 604

 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 2/67 (2%)

Query: 6   FVEFSDPRDADDARYNLDGRDVEGSRIVVEFAKGGPRGNREYLGRGPPPGSGRCFNCGLD 65
           F+EF D    + A + +D   ++  RI V+F++   +   +Y+ R    G G CF CG  
Sbjct: 288 FIEFEDKLACEQAYFKMDNALIDDRRIHVDFSQSVAKLWSQYM-RKDNKGGG-CFKCGST 345

Query: 66  GHWARDC 72
            H ARDC
Sbjct: 346 DHIARDC 352