Miyakogusa Predicted Gene
- chr1.CM0033.10.nd
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr1.CM0033.10.nd + phase: 0 /partial
(945 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC003010A_C01 KMC003010A_c01 567 e-162
KMC011365A_C01 KMC011365A_c01 174 1e-43
KMC018312A_C01 KMC018312A_c01 62 1e-09
>KMC003010A_C01 KMC003010A_c01
Length = 536
Score = 567 bits (286), Expect = e-162
Identities = 296/298 (99%), Gaps = 1/298 (0%)
Strand = Plus / Minus
Query: 649 cagccctccaagaccaggaagcatagtttatcacctgaccgagctagcccacagaagaga 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 cagccctccaagaccaggaagcatagtttatcacctgaccgagctagcccacagaagaga 477
Query: 709 ggtgactcctctcctgctgaggatgggttggtcacccagcaagatgggtctgactacagc 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 ggtgactcctctcctgctgaggatgggttggtcacccagcaagatgggtctgactacagc 417
Query: 769 aatggccatagagataggagcagaagccctgctagccctgtaagggaccgtgaaggtagc 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 aatggccatagagataggagcagaagccctgctagccctgtaagggaccgtgaaggtagc 357
Query: 829 cttaaagctaatggtcgcagtcagagccctggccgaagtccaaggga-tgatgacaggag 887
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 356 cttaaagctaatggtcgcagtcagagccctggccgaagtccaagggactgatgacaggag 297
Query: 888 ccccattgatgatgatgatggcaaccaccgccgcttgccaagaggtagtgagtcccct 945
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 296 ccccattgatgatgatgatggcaaccaccgccgcttgcccagaggtagtgagtcccct 239
>KMC011365A_C01 KMC011365A_c01
Length = 598
Score = 174 bits (88), Expect = 1e-43
Identities = 136/152 (89%)
Strand = Plus / Plus
Query: 143 tgggtcgaggtccacctcctggatctggacgctgcttcaattgtggccttgatggtcatt 202
||||||| ||||||||||||||||||||||||||||| || ||||| ||||||| || |
Sbjct: 359 tgggtcgtggtccacctcctggatctggacgctgctttaactgtggtattgatggccact 418
Query: 203 gggcccgagattgcaaagctggggattggaagaacaagtgctaccgatgtggggataggg 262
|||| ||||||||||||||||||||||||||||||||||| || ||||||| || || |
Sbjct: 419 gggctcgagattgcaaagctggggattggaagaacaagtgttatagatgtggagagagag 478
Query: 263 gtcatgtagaaaggaactgcaagaacagtccc 294
||||| |||||| |||||||||||||||||||
Sbjct: 479 gtcatatagaaaagaactgcaagaacagtccc 510
Score = 141 bits (71), Expect = 1e-33
Identities = 95/103 (92%)
Strand = Plus / Plus
Query: 16 tttgtggaatttagcgatcctcgagatgctgatgatgcaagatataacctggatggtcgt 75
||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 202 tttgttgaatttagcgatcctcgagatgctgatgatgcaagatataacttggatggacgt 261
Query: 76 gatgttgaaggaagtcgtattgttgtggaatttgccaaagggg 118
|||||||| ||||||||| || |||| |||||||| |||||||
Sbjct: 262 gatgttgatggaagtcgtcttattgttgaatttgcaaaagggg 304
>KMC018312A_C01 KMC018312A_c01
Length = 536
Score = 61.9 bits (31), Expect = 1e-09
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 871 agggatgatgacaggagccccattgatgatgatgatggcaaccaccg 917
||||||||||| |||||||||||||| || ||||||| |||||||||
Sbjct: 263 agggatgatgataggagccccattgaagaagatgatgacaaccaccg 217
Score = 60.0 bits (30), Expect = 4e-09
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 652 ccctccaagaccaggaagcatagtttatcacctgaccgagctagcccacagaagagaggt 711
||||||| ||| |||||||||||| |||| ||||||| || ||||||||||||||| ||
Sbjct: 476 ccctccaggacaaggaagcatagtctatctcctgacctagacagcccacagaagagaagt 417
Query: 712 ga 713
||
Sbjct: 416 ga 415
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2826
Number of Sequences: 8469
Number of extensions: 2826
Number of successful extensions: 928
Number of sequences better than 1.0e-03: 3
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 920
Number of HSP's gapped (non-prelim): 7
length of query: 945
length of database: 5,164,774
effective HSP length: 16
effective length of query: 929
effective length of database: 5,029,270
effective search space: 4672191830
effective search space used: 4672191830
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)