Miyakogusa Predicted Gene
- chr1.CM0033.10.nd
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr1.CM0033.10.nd + phase: 0 /partial
(314 letters)
Database: TAIR8_pep
32,825 sequences; 13,166,001 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G37340.1 | Symbols: ATRSZ33, RSZ33 | RSZ33 (ARGININE/SERINE-R... 174 7e-44
AT2G37340.3 | Symbols: ATRSZ33, RSZ33 | RSZ33 (ARGININE/SERINE-R... 173 1e-43
AT3G53500.2 | Symbols: RSZ32 | RSZ32; nucleic acid binding | chr... 171 5e-43
AT3G53500.1 | Symbols: RSZ32 | RSZ32; nucleic acid binding | chr... 171 5e-43
AT2G37340.2 | Symbols: ATRSZ33, RSZ33 | RSZ33 (ARGININE/SERINE-R... 168 4e-42
AT1G09140.2 | Symbols: ATSRP30, ATSRP30.1, ATSRP30.2 | ATSRP30.1... 49 4e-06
AT1G09140.1 | Symbols: ATSRP30, ATSRP30.1, ATSRP30.2 | ATSRP30.1... 49 4e-06
AT4G02430.2 | Symbols: | pre-mRNA splicing factor, putative / S... 46 4e-05
AT4G02430.1 | Symbols: | pre-mRNA splicing factor, putative / S... 45 4e-05
AT3G42860.1 | Symbols: | zinc knuckle (CCHC-type) family protei... 44 2e-04
AT1G02840.3 | Symbols: ATSRP34, SRP34, SR1 | SR1 (splicing facto... 44 2e-04
AT1G02840.2 | Symbols: ATSRP34, SRP34, SR1 | SR1 (splicing facto... 44 2e-04
AT1G02840.1 | Symbols: ATSRP34, SRP34, SR1 | SR1 (splicing facto... 44 2e-04
AT4G36020.1 | Symbols: CSDP1 | CSDP1 (COLD SHOCK DOMAIN PROTEIN ... 43 2e-04
>AT2G37340.1 | Symbols: ATRSZ33, RSZ33 | RSZ33 (ARGININE/SERINE-RICH
ZINC KNUCKLE-CONTAINING PROTEIN 33); nucleic acid
binding / nucleotide binding / zinc ion binding |
chr2:15677451-15679410 REVERSE
Length = 290
Score = 174 bits (440), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 76/95 (80%), Positives = 87/95 (91%)
Query: 6 FVEFSDPRDADDARYNLDGRDVEGSRIVVEFAKGGPRGNREYLGRGPPPGSGRCFNCGLD 65
FVEF DPRDADDAR+ LDGRD +GSRI VEF++G PRG+R++ RGPPPG+GRCFNCG+D
Sbjct: 48 FVEFGDPRDADDARHYLDGRDFDGSRITVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVD 107
Query: 66 GHWARDCKAGDWKNKCYRCGDRGHVERNCKNSPKK 100
GHWARDC AGDWKNKCYRCG+RGH+ERNCKNSPKK
Sbjct: 108 GHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKK 142
>AT2G37340.3 | Symbols: ATRSZ33, RSZ33 | RSZ33 (ARGININE/SERINE-RICH
ZINC KNUCKLE-CONTAINING PROTEIN 33); nucleic acid
binding / nucleotide binding / zinc ion binding |
chr2:15677451-15678663 REVERSE
Length = 249
Score = 173 bits (439), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 76/95 (80%), Positives = 87/95 (91%)
Query: 6 FVEFSDPRDADDARYNLDGRDVEGSRIVVEFAKGGPRGNREYLGRGPPPGSGRCFNCGLD 65
FVEF DPRDADDAR+ LDGRD +GSRI VEF++G PRG+R++ RGPPPG+GRCFNCG+D
Sbjct: 7 FVEFGDPRDADDARHYLDGRDFDGSRITVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVD 66
Query: 66 GHWARDCKAGDWKNKCYRCGDRGHVERNCKNSPKK 100
GHWARDC AGDWKNKCYRCG+RGH+ERNCKNSPKK
Sbjct: 67 GHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKK 101
>AT3G53500.2 | Symbols: RSZ32 | RSZ32; nucleic acid binding |
chr3:19845535-19847485 REVERSE
Length = 284
Score = 171 bits (433), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 76/93 (81%), Positives = 84/93 (90%)
Query: 6 FVEFSDPRDADDARYNLDGRDVEGSRIVVEFAKGGPRGNREYLGRGPPPGSGRCFNCGLD 65
FVEFSDPRDADDARY LDGRD +GSRI VE ++G PRG+R+ RGPPPGSGRCFNCG+D
Sbjct: 48 FVEFSDPRDADDARYYLDGRDFDGSRITVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVD 107
Query: 66 GHWARDCKAGDWKNKCYRCGDRGHVERNCKNSP 98
GHWARDC AGDWKNKCYRCG+RGH+ERNCKNSP
Sbjct: 108 GHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 140
>AT3G53500.1 | Symbols: RSZ32 | RSZ32; nucleic acid binding |
chr3:19845535-19846874 REVERSE
Length = 243
Score = 171 bits (433), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 76/94 (80%), Positives = 84/94 (89%)
Query: 5 IFVEFSDPRDADDARYNLDGRDVEGSRIVVEFAKGGPRGNREYLGRGPPPGSGRCFNCGL 64
FVEFSDPRDADDARY LDGRD +GSRI VE ++G PRG+R+ RGPPPGSGRCFNCG+
Sbjct: 6 AFVEFSDPRDADDARYYLDGRDFDGSRITVEASRGAPRGSRDNGSRGPPPGSGRCFNCGV 65
Query: 65 DGHWARDCKAGDWKNKCYRCGDRGHVERNCKNSP 98
DGHWARDC AGDWKNKCYRCG+RGH+ERNCKNSP
Sbjct: 66 DGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 99
>AT2G37340.2 | Symbols: ATRSZ33, RSZ33 | RSZ33 (ARGININE/SERINE-RICH
ZINC KNUCKLE-CONTAINING PROTEIN 33); nucleic acid
binding / zinc ion binding | chr2:15677451-15678556
REVERSE
Length = 260
Score = 168 bits (426), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 74/93 (79%), Positives = 85/93 (91%)
Query: 8 EFSDPRDADDARYNLDGRDVEGSRIVVEFAKGGPRGNREYLGRGPPPGSGRCFNCGLDGH 67
EF DPRDADDAR+ LDGRD +GSRI VEF++G PRG+R++ RGPPPG+GRCFNCG+DGH
Sbjct: 20 EFGDPRDADDARHYLDGRDFDGSRITVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGH 79
Query: 68 WARDCKAGDWKNKCYRCGDRGHVERNCKNSPKK 100
WARDC AGDWKNKCYRCG+RGH+ERNCKNSPKK
Sbjct: 80 WARDCTAGDWKNKCYRCGERGHIERNCKNSPKK 112
>AT1G09140.2 | Symbols: ATSRP30, ATSRP30.1, ATSRP30.2 | ATSRP30.1
(ARABIDOPSIS THALIANA SERINE/ARGININE PROTEIN 30.1);
RNA binding | chr1:2943530-2945820 REVERSE
Length = 256
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 27/40 (67%)
Query: 3 GKIFVEFSDPRDADDARYNLDGRDVEGSRIVVEFAKGGPR 42
G FVEF DPRDADDA Y DG D +G R+ VE A GG R
Sbjct: 46 GYAFVEFEDPRDADDAIYGRDGYDFDGCRLRVEIAHGGRR 85
>AT1G09140.1 | Symbols: ATSRP30, ATSRP30.1, ATSRP30.2 | ATSRP30.1
(ARABIDOPSIS THALIANA SERINE/ARGININE PROTEIN 30.1);
RNA binding | chr1:2942889-2945820 REVERSE
Length = 268
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 27/40 (67%)
Query: 3 GKIFVEFSDPRDADDARYNLDGRDVEGSRIVVEFAKGGPR 42
G FVEF DPRDADDA Y DG D +G R+ VE A GG R
Sbjct: 46 GYAFVEFEDPRDADDAIYGRDGYDFDGCRLRVEIAHGGRR 85
>AT4G02430.2 | Symbols: | pre-mRNA splicing factor, putative /
SR1 protein, putative | chr4:1069186-1071313 FORWARD
Length = 278
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 27/44 (61%)
Query: 3 GKIFVEFSDPRDADDARYNLDGRDVEGSRIVVEFAKGGPRGNRE 46
G FVEF D RDADDA Y DG D +G + VE A GG R + +
Sbjct: 46 GYAFVEFEDARDADDAIYGRDGYDFDGHHLRVELAHGGRRSSHD 89
>AT4G02430.1 | Symbols: | pre-mRNA splicing factor, putative /
SR1 protein, putative | chr4:1069186-1070543 FORWARD
Length = 178
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 27/44 (61%)
Query: 3 GKIFVEFSDPRDADDARYNLDGRDVEGSRIVVEFAKGGPRGNRE 46
G FVEF D RDADDA Y DG D +G + VE A GG R + +
Sbjct: 46 GYAFVEFEDARDADDAIYGRDGYDFDGHHLRVELAHGGRRSSHD 89
>AT3G42860.1 | Symbols: | zinc knuckle (CCHC-type) family protein |
chr3:14957446-14959085 REVERSE
Length = 372
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 14/53 (26%)
Query: 56 SGRCFNCGLDGHWARDCKA---------GDWKN-----KCYRCGDRGHVERNC 94
+G CF CG GHW+RDC A G K+ +CY+CG +GH R+C
Sbjct: 267 AGDCFKCGKPGHWSRDCTAQSGNPKYEPGQMKSSSSSGECYKCGKQGHWSRDC 319
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 15/60 (25%)
Query: 56 SGRCFNCGLDGHWARDC---------KAGDWKNK-----CYRCGDRGHVERNCKNSPKKT 101
SG C+ CG GHW+RDC ++G K+ CY+CG GH R+C SP +T
Sbjct: 303 SGECYKCGKQGHWSRDCTGQSSNQQFQSGQAKSTSSTGDCYKCGKAGHWSRDC-TSPAQT 361
>AT1G02840.3 | Symbols: ATSRP34, SRP34, SR1 | SR1 (splicing factor
2); RNA binding | chr1:626918-629583 FORWARD
Length = 303
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 27/42 (64%)
Query: 3 GKIFVEFSDPRDADDARYNLDGRDVEGSRIVVEFAKGGPRGN 44
G FVEF D RDA+DA + DG D +G R+ VE A GG R +
Sbjct: 46 GYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELAHGGRRSS 87
>AT1G02840.2 | Symbols: ATSRP34, SRP34, SR1 | SR1 (splicing factor
2); RNA binding | chr1:626918-628995 FORWARD
Length = 285
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 27/42 (64%)
Query: 3 GKIFVEFSDPRDADDARYNLDGRDVEGSRIVVEFAKGGPRGN 44
G FVEF D RDA+DA + DG D +G R+ VE A GG R +
Sbjct: 46 GYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELAHGGRRSS 87
>AT1G02840.1 | Symbols: ATSRP34, SRP34, SR1 | SR1 (splicing factor
2); RNA binding | chr1:626918-629583 FORWARD
Length = 303
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 27/42 (64%)
Query: 3 GKIFVEFSDPRDADDARYNLDGRDVEGSRIVVEFAKGGPRGN 44
G FVEF D RDA+DA + DG D +G R+ VE A GG R +
Sbjct: 46 GYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELAHGGRRSS 87
>AT4G36020.1 | Symbols: CSDP1 | CSDP1 (COLD SHOCK DOMAIN PROTEIN 1);
RNA binding / double-stranded DNA binding / nucleic acid
binding / single-stranded DNA binding |
chr4:17043446-17044345 REVERSE
Length = 299
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 10/46 (21%)
Query: 59 CFNCGLDGHWARDCKA---GDWK-------NKCYRCGDRGHVERNC 94
C+NCG GH+ARDC + GD + + CY CGD GHV R+C
Sbjct: 134 CYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDC 179
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 50 RGPPPGSGRCFNCGLDGHWARDCKAGDWKNK-CYRCGDRGHVERNC 94
R GSG C++CG GH ARDC ++ CY+CG GH+ R+C
Sbjct: 223 RSGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCGGSGHLARDC 268