Miyakogusa Predicted Gene

Lj4g3v2139600.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I3SLB1_LOTJA 174 78.9 78.9 (tr|I3SLB1) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep AT5G57120.1 45.4 42.1 63.2 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif (InterPro:IPR006594), SRP40, C-terminal (InterPro:IPR007718); Has 101969 Blast hits to 55488 proteins in 2506 species: Archae - 424; Bacteria - 13843; Metazoa - 37674; Fungi - 9726; Plants - 4941; Viruses - 569; Other Eukaryotes - 34792 (source: NCBI BLink). | chr5:23122767-23124400 REVERSE LENGTH=330
Medicago Medtr4g127160.1 113 55.3 64.9 | SRP40, carboxy-terminal domain protein | HC | chr4:52755202-52750421 | 20130731
Soybean Glyma13g00430.2 145 63.2 72.8  
LJGI gnl|LJGI|TC66020 678 100.0 100.0 similar to UniRef100_Q9LD90 Cluster: H/ACA ribonucleoprotein complex subunit 4; n=1; Arabidopsis thaliana|Rep: H/ACA ribonucleoprotein complex subunit 4 - Arabidopsis thaliana (Mouse-ear cress), partial (4%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v2139600.1 length: 114 aa.
IPR006594 LisH dimerisation motif
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMSmart SM00667 Lissencephaly 0.0006 46-78
ProfileScan PS50896 LISH 9.619 46-78
no_ID  
Seg seg seg NA 38-50
Wolf-PSORT
Lj4g3v2139600.1	chlo 8, nucl 3, extr 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v2139600.1