Miyakogusa Predicted Gene
- Lj4g3v2139600.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v2139600.1 Non Chatacterized Hit- tr|C6THQ8|C6THQ8_SOYBN
Putative uncharacterized protein (Fragment)
OS=Glycine,58.33,2e-18,Lissencephaly type-1-like homology motif,LisH
dimerisation motif; LISH,LisH dimerisation motif;
seg,,NODE_56480_length_408_cov_67.357841.path1.1
(342 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC66020 similar to UniRef100_Q9LD90 Cluster: H/ACA ribo... 678 0.0
gnl|LJGI|TC60721 similar to UniRef100_Q9LD90 Cluster: H/ACA ribo... 674 0.0
gnl|LJGI|TC65490 similar to UniRef100_A7QUB2 Cluster: Chromosome... 379 e-105
>gnl|LJGI|TC66020 similar to UniRef100_Q9LD90 Cluster: H/ACA ribonucleoprotein
complex subunit 4; n=1; Arabidopsis thaliana|Rep: H/ACA
ribonucleoprotein complex subunit 4 - Arabidopsis
thaliana (Mouse-ear cress), partial (4%)
Length = 947
Score = 678 bits (342), Expect = 0.0
Identities = 342/342 (100%)
Strand = Plus / Plus
Query: 1 atgcctgcaactccaccaagccacaaagcaagcagctctaccatcttcgcattcacccct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 atgcctgcaactccaccaagccacaaagcaagcagctctaccatcttcgcattcacccct 200
Query: 61 cgtcaggttctgctaagaaaccaaaccatgaagcacgacgctgacaatggaaccaccctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cgtcaggttctgctaagaaaccaaaccatgaagcacgacgctgacaatggaaccaccctc 260
Query: 121 accttgacactggaacagaggcttcttcttcaccaatccattgcccgttacttcgaccga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accttgacactggaacagaggcttcttcttcaccaatccattgcccgttacttcgaccga 320
Query: 181 cgtgggttatccaaatccctcaaaaaatttcgttctgaagccaaaatcgagaaggataat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgtgggttatccaaatccctcaaaaaatttcgttctgaagccaaaatcgagaaggataat 380
Query: 241 gtggatgagtcgtcagttgatctggaagaattgttcctcaaatatctagaaacatgtagc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtggatgagtcgtcagttgatctggaagaattgttcctcaaatatctagaaacatgtagc 440
Query: 301 caggatgtcaagtcaaatgtcaatgaccaaaaggagcaaggt 342
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caggatgtcaagtcaaatgtcaatgaccaaaaggagcaaggt 482
>gnl|LJGI|TC60721 similar to UniRef100_Q9LD90 Cluster: H/ACA ribonucleoprotein
complex subunit 4; n=1; Arabidopsis thaliana|Rep: H/ACA
ribonucleoprotein complex subunit 4 - Arabidopsis
thaliana (Mouse-ear cress), partial (4%)
Length = 783
Score = 674 bits (340), Expect = 0.0
Identities = 340/340 (100%)
Strand = Plus / Plus
Query: 1 atgcctgcaactccaccaagccacaaagcaagcagctctaccatcttcgcattcacccct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45 atgcctgcaactccaccaagccacaaagcaagcagctctaccatcttcgcattcacccct 104
Query: 61 cgtcaggttctgctaagaaaccaaaccatgaagcacgacgctgacaatggaaccaccctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 cgtcaggttctgctaagaaaccaaaccatgaagcacgacgctgacaatggaaccaccctc 164
Query: 121 accttgacactggaacagaggcttcttcttcaccaatccattgcccgttacttcgaccga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 accttgacactggaacagaggcttcttcttcaccaatccattgcccgttacttcgaccga 224
Query: 181 cgtgggttatccaaatccctcaaaaaatttcgttctgaagccaaaatcgagaaggataat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 cgtgggttatccaaatccctcaaaaaatttcgttctgaagccaaaatcgagaaggataat 284
Query: 241 gtggatgagtcgtcagttgatctggaagaattgttcctcaaatatctagaaacatgtagc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 gtggatgagtcgtcagttgatctggaagaattgttcctcaaatatctagaaacatgtagc 344
Query: 301 caggatgtcaagtcaaatgtcaatgaccaaaaggagcaag 340
||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 caggatgtcaagtcaaatgtcaatgaccaaaaggagcaag 384
>gnl|LJGI|TC65490 similar to UniRef100_A7QUB2 Cluster: Chromosome chr11 scaffold_177,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr11 scaffold_177, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (14%)
Length = 1258
Score = 379 bits (191), Expect = e-105
Identities = 191/191 (100%)
Strand = Plus / Plus
Query: 152 accaatccattgcccgttacttcgaccgacgtgggttatccaaatccctcaaaaaatttc 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 accaatccattgcccgttacttcgaccgacgtgggttatccaaatccctcaaaaaatttc 211
Query: 212 gttctgaagccaaaatcgagaaggataatgtggatgagtcgtcagttgatctggaagaat 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 gttctgaagccaaaatcgagaaggataatgtggatgagtcgtcagttgatctggaagaat 271
Query: 272 tgttcctcaaatatctagaaacatgtagccaggatgtcaagtcaaatgtcaatgaccaaa 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tgttcctcaaatatctagaaacatgtagccaggatgtcaagtcaaatgtcaatgaccaaa 331
Query: 332 aggagcaaggt 342
|||||||||||
Sbjct: 332 aggagcaaggt 342
Score = 168 bits (85), Expect = 1e-41
Identities = 88/89 (98%)
Strand = Plus / Plus
Query: 1 atgcctgcaactccaccaagccacaaagcaagcagctctaccatcttcgcattcacccct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 atgcctgcaactccaccaagccacaaagcaagcagctctaccatcttcgcattcacccct 132
Query: 61 cgtcaggttctgctaagaaaccaaaccat 89
|||||||||||||||||||||||| ||||
Sbjct: 133 cgtcaggttctgctaagaaaccaatccat 161