Miyakogusa Predicted Gene

Lj4g3v2139600.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2139600.1 Non Chatacterized Hit- tr|C6THQ8|C6THQ8_SOYBN
Putative uncharacterized protein (Fragment)
OS=Glycine,58.33,2e-18,Lissencephaly type-1-like homology motif,LisH
dimerisation motif; LISH,LisH dimerisation motif;
seg,,NODE_56480_length_408_cov_67.357841.path1.1
         (114 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G57120.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    45   8e-06

>AT5G57120.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           nucleolus; EXPRESSED IN: 21 plant structures; EXPRESSED
           DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
           LisH dimerisation motif (InterPro:IPR006594), SRP40,
           C-terminal (InterPro:IPR007718); Has 101969 Blast hits
           to 55488 proteins in 2506 species: Archae - 424;
           Bacteria - 13843; Metazoa - 37674; Fungi - 9726; Plants
           - 4941; Viruses - 569; Other Eukaryotes - 34792 (source:
           NCBI BLink). | chr5:23122767-23124400 REVERSE LENGTH=330
          Length = 330

 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%)

Query: 52  QSIARYFDRRGLSKSLKKFRSEAKIEKDNVDESSVDLEELFLKYLETCSQDVKSNVN 108
           +S+A+Y +R G SK  KK  SEA+IEK  ++ S  DLEE+F ++L     +  +N N
Sbjct: 20  RSVAQYLERCGFSKCFKKLLSEAEIEKKELNTSLPDLEEIFSEFLNKRDHEAAANGN 76