Miyakogusa Predicted Gene

Lj1g3v4591010.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I3SER7_LOTJA 642 100.0 100.0 (tr|I3SER7) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep AT2G36990.1 439 66.2 83.3 | Symbols: SIGF, SIG6, ATSIG6, SOLDAT8 | RNApolymerase sigma-subunit F | chr2:15537502-15540016 REVERSE LENGTH=547
Medicago Medtr7g101840.1 498 73.6 87.8 | RNA polymerase sigma factor | HC | chr7:41066429-41071150 | 20130731
Soybean Glyma19g36710.1 497 74.9 87.8  
LJGI gnl|LJGI|TC68761 1796 99.9 99.9 similar to UniRef100_A7PT61 Cluster: Chromosome chr8 scaffold_29, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr8 scaffold_29, whole genome shotgun sequence - Vitis vinifera (Grape), complete
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v4591010.1 length: 311 aa.
IPR000943 RNA polymerase sigma-70
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006352 DNA-dependent transcription, initiation    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0016987 sigma factor activity    
FPrintScan PR00046 SIGMA70FCT 7.2e-25 99-112
123-131
247-259
268-283
283-294
PatternScan PS00715 SIGMA70_1 NA 99-112
PatternScan PS00716 SIGMA70_2 NA 268-294
IPR007624 RNA polymerase sigma-70 region 3
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006352 DNA-dependent transcription, initiation    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0016987 sigma factor activity    
HMMPfam PF04539 Sigma70_r3 1.9e-13 156-229
IPR007627 RNA polymerase sigma-70 region 2
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006352 DNA-dependent transcription, initiation    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0016987 sigma factor activity    
HMMPfam PF04542 Sigma70_r2 6e-20 75-139
IPR007630 RNA polymerase sigma-70 region 4
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006352 DNA-dependent transcription, initiation    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0016987 sigma factor activity    
HMMPfam PF04545 Sigma70_r4 3.7e-20 243-296
IPR011991 Winged helix-turn-helix DNA-binding domain
Gene3D G3DSA:1.10.10.10 no description 1e-23 144-197
239-307
IPR013324 RNA polymerase sigma factor, region 3/4
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006352 DNA-dependent transcription, initiation    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0016987 sigma factor activity    
superfamily SSF88659 Sigma3 2e-11 205-309
148-222
IPR013325 RNA polymerase sigma factor, region 2
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006352 DNA-dependent transcription, initiation    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0016987 sigma factor activity    
superfamily SSF88946 Sigma2 3.5e-41 1-145
IPR014284 RNA polymerase sigma-70 like domain
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006352 DNA-dependent transcription, initiation    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0016987 sigma factor activity    
HMMTigr TIGR02937 sigma70-ECF: 3.6e-35 73-298
no_ID  
Gene3D G3DSA:1.10.601.10 no description 1.4e-37 66-140
HMMPanther PTHR30603 RNA 3.9e-105 1-310
Wolf-PSORT
Lj1g3v4591010.1	cyto 12, nucl 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v4591010.1