Miyakogusa Predicted Gene

Lj1g3v4591010.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4591010.1 Non Chatacterized Hit- tr|I3SER7|I3SER7_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,100,0,no
description,NULL; no description,Winged helix-turn-helix transcription
repressor DNA-binding;
SIG,NODE_31328_length_2005_cov_71.025932.path1.1
         (311 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G36990.1 | Symbols: SIGF, SIG6, ATSIG6, SOLDAT8 | RNApolymera...   439   e-124
AT1G08540.1 | Symbols: SIGB, SIG1, SIG2, SIGA, ATSIG1, ABC1, ATS...   235   4e-62
AT5G13730.1 | Symbols: SIG4, SIGD | sigma factor 4 | chr5:442913...   156   2e-38
AT3G53920.1 | Symbols: SIGC, SIG3 | RNApolymerase sigma-subunit ...   156   2e-38
AT1G64860.1 | Symbols: SIGA, SIG1, SIG2, SIGB, RPOD1 | sigma fac...   139   2e-33
AT1G64860.2 | Symbols: SIGA | sigma factor A | chr1:24098497-241...   124   1e-28
AT5G24120.1 | Symbols: SIGE, SIG5, ATSIG5 | sigma factor E | chr...   123   1e-28

>AT2G36990.1 | Symbols: SIGF, SIG6, ATSIG6, SOLDAT8 | RNApolymerase
           sigma-subunit F | chr2:15537502-15540016 REVERSE
           LENGTH=547
          Length = 547

 Score =  439 bits (1130), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 206/311 (66%), Positives = 259/311 (83%)

Query: 1   MFLWGPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYA 60
           +FLWGPETK+LLT +EE++LIS IQ+L +LE+VK +L+SQ G EPT+ EWA+ +G+S   
Sbjct: 237 LFLWGPETKQLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPV 296

Query: 61  LQTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAG 120
           L++ +  G  S+EKLI ANLR+VVH+AK Y  RGL+FQDLLQEGSMGLMKSVEKFKPQ+G
Sbjct: 297 LKSDIHRGRSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSG 356

Query: 121 CRFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELA 180
           CRFA+YAYWWIRQ+IR+++F +SRTIRLPENVY LLGK+ EA+K   +EGN  P+KEELA
Sbjct: 357 CRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELA 416

Query: 181 RKIGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHA 240
             +GV+ +KL+ LL   R PLSMQQ +W+DQDTT+QEIT D+ IETP + V KQLMR H 
Sbjct: 417 GHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDTTFQEITPDSGIETPTMSVGKQLMRNHV 476

Query: 241 RNLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLAS 300
           RNLL+ L+P+ERRII+LRFGI+ G ++SLSEIG ++GLSKERVRQLESRAL +LKQ + S
Sbjct: 477 RNLLNVLSPKERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQNMNS 536

Query: 301 HGLDAYANLLV 311
           HGL AYA+LLV
Sbjct: 537 HGLHAYADLLV 547


>AT1G08540.1 | Symbols: SIGB, SIG1, SIG2, SIGA, ATSIG1, ABC1, ATSIG2
           | RNApolymerase sigma subunit 2 | chr1:2703461-2706696
           FORWARD LENGTH=572
          Length = 572

 Score =  235 bits (599), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 118/299 (39%), Positives = 188/299 (62%)

Query: 8   TKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRS 67
           + KLLT  EE +L + IQ+L +LE ++  L  + GR+PT A+WA   G+   +L+ ++  
Sbjct: 269 SSKLLTVREEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHH 328

Query: 68  GTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYA 127
           GT  K+K+I +N+R+V+ +AKNY G G++ QDL+QEG  GL++  EKF    G +F++YA
Sbjct: 329 GTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYA 388

Query: 128 YWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTV 187
           +WWI+Q +R++L   SR IRLP ++     ++ EA+K    E   HP  EE+A   G+++
Sbjct: 389 HWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSM 448

Query: 188 DKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTL 247
            +L  +L + + P S+ Q +  +Q+    E+ AD    T +  + K+ MR+    +L +L
Sbjct: 449 KRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSL 508

Query: 248 NPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
             RE+++IR RFG+EDG  K+L EIG + G+S+ERVRQ+ES A  KLK    ++ L  Y
Sbjct: 509 GTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQY 567


>AT5G13730.1 | Symbols: SIG4, SIGD | sigma factor 4 |
           chr5:4429132-4430744 REVERSE LENGTH=419
          Length = 419

 Score =  156 bits (394), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 82/236 (34%), Positives = 130/236 (55%)

Query: 71  SKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 130
           ++EK+     R+VV +A  Y G+GL+ QDL+QEGS+GL++  E+F P  G + ++Y YWW
Sbjct: 179 AREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPDRGYKLSTYVYWW 238

Query: 131 IRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKL 190
           I+Q I RA+   SR ++LP +++ L  K+ EA     R+    P+ EE+A  + + V  +
Sbjct: 239 IKQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLTRKLRRQPSCEEIAEHLNLNVSAV 298

Query: 191 EILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPR 250
            + +  +R P+S+ +    +   T QEI        P+  V ++ M+     LL +L  R
Sbjct: 299 RLAVERSRSPVSLDRVASQNGRMTLQEIVRGPDETRPEEMVKREHMKHEIEQLLGSLTAR 358

Query: 251 ERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
           E R++ L FG+      S  EIG    LS+ERVRQ+   AL KL+     + L  Y
Sbjct: 359 ESRVLGLYFGLNGETPMSFEEIGKSLKLSRERVRQINGIALKKLRNVHNVNDLKIY 414


>AT3G53920.1 | Symbols: SIGC, SIG3 | RNApolymerase sigma-subunit C |
           chr3:19961041-19963820 REVERSE LENGTH=571
          Length = 571

 Score =  156 bits (394), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 167/293 (56%), Gaps = 1/293 (0%)

Query: 17  ESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTRSKEKLI 76
           E+++ + ++ +  +E ++ +L+ + G+  +++ WA   G++   L   L  G   +++L+
Sbjct: 278 ETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDELV 337

Query: 77  HANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWIRQTIR 136
            +   +V+ +A+NY G G++ +DL+Q G +G+++  E+F    G +F++Y  +WIR+++ 
Sbjct: 338 KSTRSLVLFLARNYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMS 397

Query: 137 RALFLHSRTIRLPENVYTLLGKLIEAKK-FYNREGNVHPTKEELARKIGVTVDKLEILLS 195
             +  H+R + +P ++   +  + +A+K      G  +   EE+A+  G +V K+     
Sbjct: 398 TMVSRHARGVHIPSSIIRTINHIQKARKTLKTSHGIKYAADEEIAKLTGHSVKKIRAANQ 457

Query: 196 AARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPRERRII 255
             ++  S+ + V     T + E T DT +E+P+  V +Q  RR   +LL  L PRE++++
Sbjct: 458 CLKVVGSIDKKVGDCFTTKFLEFTPDTTMESPEEAVMRQSARRDIHDLLEGLEPREKQVM 517

Query: 256 RLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAYAN 308
            LR+G++D   KSL EIG +  +SKE +R++E RA+ KL+    +  L  Y N
Sbjct: 518 VLRYGLQDYRPKSLEEIGKLLKVSKEWIRKIERRAMAKLRDQPNAEDLRYYLN 570


>AT1G64860.1 | Symbols: SIGA, SIG1, SIG2, SIGB, RPOD1 | sigma factor
           A | chr1:24098497-24100746 FORWARD LENGTH=502
          Length = 502

 Score =  139 bits (351), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/310 (31%), Positives = 165/310 (53%), Gaps = 8/310 (2%)

Query: 2   FLWGPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYAL 61
           ++ G  ++ +L+  E  +L  +I++  RL++ K RL+ + G EP+  + A  + +S   L
Sbjct: 190 YVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRAEL 249

Query: 62  QTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGC 121
           Q  L     ++EKL  +N+R+V+ +A+ Y   G    DL+Q G +GL++ +EKF    G 
Sbjct: 250 QAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGF 309

Query: 122 RFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELAR 181
           R ++Y YWWIRQ + RAL  +SRT+RLP +++  LG LI   K   +E  + P+ + +A 
Sbjct: 310 RISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAE 368

Query: 182 KIGVTVDKLEILLSAARIPLSMQQTVWTDQD----TTYQEITADTAIETPDVYVAKQL-M 236
            + ++  K+     A     S+ +  +   +     T+    ADT +E    +    L +
Sbjct: 369 SLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLAL 428

Query: 237 RRHARNLLH-TLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLK 295
           +     L+  TL  RE+ IIRL +G+ D    +  +I    GLS+ERVRQ+   AL+KLK
Sbjct: 429 KEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLK 487

Query: 296 QCLASHGLDA 305
                  ++A
Sbjct: 488 HAARKRKMEA 497


>AT1G64860.2 | Symbols: SIGA | sigma factor A |
           chr1:24098497-24100739 FORWARD LENGTH=498
          Length = 498

 Score =  124 bits (310), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/267 (30%), Positives = 143/267 (53%), Gaps = 7/267 (2%)

Query: 2   FLWGPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYAL 61
           ++ G  ++ +L+  E  +L  +I++  RL++ K RL+ + G EP+  + A  + +S   L
Sbjct: 190 YVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRAEL 249

Query: 62  QTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGC 121
           Q  L     ++EKL  +N+R+V+ +A+ Y   G    DL+Q G +GL++ +EKF    G 
Sbjct: 250 QAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGF 309

Query: 122 RFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELAR 181
           R ++Y YWWIRQ + RAL  +SRT+RLP +++  LG LI   K   +E  + P+ + +A 
Sbjct: 310 RISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLG-LIRNAKLRLQEKGITPSIDRIAE 368

Query: 182 KIGVTVDKLEILLSAARIPLSMQQTVWTDQD----TTYQEITADTAIETPDVYVAKQL-M 236
            + ++  K+     A     S+ +  +   +     T+    ADT +E    +    L +
Sbjct: 369 SLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLAL 428

Query: 237 RRHARNLLH-TLNPRERRIIRLRFGIE 262
           +     L+  TL  RE+ IIRL +G++
Sbjct: 429 KEEVSKLISATLGEREKEIIRLYYGLD 455


>AT5G24120.1 | Symbols: SIGE, SIG5, ATSIG5 | sigma factor E |
           chr5:8157794-8159746 REVERSE LENGTH=517
          Length = 517

 Score =  123 bits (309), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 157/292 (53%), Gaps = 11/292 (3%)

Query: 11  LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 70
           +L+  E + L   +Q +  L EVK  LQ   GREP  AE A  + ++   ++ ++  G  
Sbjct: 219 VLSSTEHAWLFKLMQPMKALLEVKDVLQKSLGREPREAEIAGEINMTAGEVKKKIEIGRA 278

Query: 71  SKEKLIHANLRMVVHVAKNY---LGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYA 127
           ++ KLI  NLR+V+ V   Y      G  FQDL Q G  GL+ ++++F+P+   R ++Y 
Sbjct: 279 ARNKLIKHNLRLVLFVMNKYFHEFTNGPKFQDLCQAGMRGLITAIDRFEPKRKFRLSTYG 338

Query: 128 YWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTV 187
            +WIR  I R++   + T R+P  + ++  ++ +AK     E    PT++E+  ++ +T 
Sbjct: 339 LFWIRHAIIRSMTTSNFT-RVPFGLESVRVEIYKAKTELWFEMGRPPTEDEVVERLKITP 397

Query: 188 DKLEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQ--LMRRHARNLL 244
           ++   +L AA+  LS+     +    T +E I   T ++      ++Q  L+R    ++L
Sbjct: 398 ERYREVLRAAKPVLSLN----SKHSVTQEEFINGITDVDGVGANNSRQPALLRLALDDVL 453

Query: 245 HTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQ 296
            +L P+E  +IR R+G++   +++L EI     +S+E VR+ E +AL KLK 
Sbjct: 454 DSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKH 505