Miyakogusa Predicted Gene

Lj1g3v4591010.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4591010.1 Non Characterized Hit- tr|I3SER7|I3SER7_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,100,0,no
description,NULL; no description,Winged helix-turn-helix transcription
repressor DNA-binding;
SIG,NODE_31328_length_2005_cov_71.025932.path1.1
         (311 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g101840.1 | RNA polymerase sigma factor | HC | chr7:410664...   498   e-141
Medtr1g063850.1 | RNA polymerase sigma factor | HC | chr1:280302...   450   e-127
Medtr3g118290.1 | RNA polymerase sigma factor | HC | chr3:553778...   229   2e-60
Medtr3g033420.1 | RNA polymerase sigma factor | HC | chr3:106852...   171   9e-43
Medtr1g007370.1 | RNA polymerase sigma factor | HC | chr1:310765...   154   1e-37
Medtr0172s0030.1 | RNA polymerase sigma factor | HC | scaffold01...   135   5e-32
Medtr0172s0030.2 | RNA polymerase sigma factor | HC | scaffold01...   135   5e-32
Medtr3g090900.1 | RNA polymerase sigma factor | HC | chr3:412740...   122   5e-28
Medtr3g090900.2 | RNA polymerase sigma factor | HC | chr3:412740...    94   2e-19
Medtr1g007370.2 | RNA polymerase sigma factor | HC | chr1:310765...    84   2e-16
Medtr3g090900.3 | RNA polymerase sigma factor | HC | chr3:412740...    83   4e-16
Medtr3g033150.1 | RNA polymerase sigma factor | HC | chr3:105390...    81   1e-15

>Medtr7g101840.1 | RNA polymerase sigma factor | HC |
           chr7:41066429-41071150 | 20130731
          Length = 557

 Score =  498 bits (1282), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 229/311 (73%), Positives = 273/311 (87%)

Query: 1   MFLWGPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYA 60
           +FLW PETK+LL+ EEESQLI+QIQ+LF+L+E KI+LQS FGREPT+AEWADGVGLSC  
Sbjct: 247 LFLWSPETKQLLSIEEESQLIAQIQDLFKLKETKIKLQSHFGREPTLAEWADGVGLSCRD 306

Query: 61  LQTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAG 120
           LQ +L  G RSK+KLIHANLR+VVH+AK Y GRGLS QDLLQEGSMGLM+SVEKFKPQAG
Sbjct: 307 LQKRLHCGNRSKDKLIHANLRLVVHIAKYYQGRGLSLQDLLQEGSMGLMRSVEKFKPQAG 366

Query: 121 CRFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELA 180
           CRF++YAYWWIRQTIRRALFLHS+TIRLPEN Y LLGK+ EAKK Y +EGN+HPTKEE+A
Sbjct: 367 CRFSTYAYWWIRQTIRRALFLHSKTIRLPENFYALLGKIAEAKKSYIKEGNLHPTKEEIA 426

Query: 181 RKIGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHA 240
           +++G+TVD+LE+LL + R PLSM++ VW D DTT+QEITAD++IE P+V VAKQLMR H 
Sbjct: 427 KRVGITVDRLEMLLFSTRTPLSMERAVWADSDTTFQEITADSSIEIPNVCVAKQLMRSHV 486

Query: 241 RNLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLAS 300
           RNLL  L P+ER+++RLRFGIEDGYEKSL+EIG V G+ KERVRQLES+AL+KLKQCL S
Sbjct: 487 RNLLGILPPKERKVLRLRFGIEDGYEKSLTEIGKVLGVCKERVRQLESQALNKLKQCLVS 546

Query: 301 HGLDAYANLLV 311
             LDAY +L+V
Sbjct: 547 QQLDAYVDLIV 557


>Medtr1g063850.1 | RNA polymerase sigma factor | HC |
           chr1:28030240-28023352 | 20130731
          Length = 561

 Score =  450 bits (1157), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 212/310 (68%), Positives = 260/310 (83%)

Query: 2   FLWGPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYAL 61
           FL  PE+K+LLT E+ESQL+ QIQ L RLE++K  LQSQFGREPTMAEWA+G GL+C  +
Sbjct: 252 FLQSPESKQLLTSEQESQLVVQIQELLRLEDLKTSLQSQFGREPTMAEWAEGAGLNCRKM 311

Query: 62  QTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGC 121
           + QLR G RS+EKLI ANLR+V ++AK+Y GRGLS +DLLQEGS GL+KS++KFK QAGC
Sbjct: 312 KAQLRCGNRSREKLIQANLRLVHYIAKSYQGRGLSIEDLLQEGSTGLIKSIKKFKTQAGC 371

Query: 122 RFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELAR 181
           RFASYAYWWI+Q IR+A++ HSRTIRLPE VY  L K++EAKK Y  EGN++PTKEELAR
Sbjct: 372 RFASYAYWWIKQAIRKAIYNHSRTIRLPEKVYNKLSKVLEAKKLYKEEGNLNPTKEELAR 431

Query: 182 KIGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHAR 241
           ++G++ DK++ LL  ARIP+SMQ TV ++ DTT+QEITAD AIE+P++ VAKQLMRRH  
Sbjct: 432 RVGISPDKVDRLLFVARIPISMQNTVGSETDTTFQEITADCAIESPNMSVAKQLMRRHVL 491

Query: 242 NLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASH 301
           N+L+ L P+ERRIIRLRFG EDG EKSLSEIG +FGLS+ERVRQLESRAL KLK+ L   
Sbjct: 492 NVLNILRPKERRIIRLRFGFEDGEEKSLSEIGEIFGLSRERVRQLESRALYKLKKYLVGQ 551

Query: 302 GLDAYANLLV 311
           GLDAYA+LL+
Sbjct: 552 GLDAYADLLI 561


>Medtr3g118290.1 | RNA polymerase sigma factor | HC |
           chr3:55377817-55374030 | 20130731
          Length = 572

 Score =  229 bits (584), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 116/291 (39%), Positives = 181/291 (62%)

Query: 16  EESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTRSKEKL 75
           EE +    IQ+L +LE+++  L  + G +PT A+WA   G+    L+ +L  G   KEK+
Sbjct: 279 EEIKFSEGIQDLIKLEKLQEDLAEKCGGQPTFAQWATMAGVDQKTLRKRLNYGVFCKEKM 338

Query: 76  IHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWIRQTI 135
           I +N+R+V+ VAKNY G G+S QDL+QEG  GL++  EK+    G +F++YA+WWI+Q +
Sbjct: 339 IKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFSTYAHWWIKQAV 398

Query: 136 RRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKLEILLS 195
           R++L + SRTIRLP ++     K+ EA+K    E    P  EE+A   G+++ +L  +L 
Sbjct: 399 RKSLSVQSRTIRLPFHMVGATYKVKEARKQLYSENGRQPDDEEVAEATGLSMKRLSAVLL 458

Query: 196 AARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPRERRII 255
             + P S++Q V  +Q     E+ AD   ET +  + KQ M++    +L +LNPRE+++I
Sbjct: 459 TPKAPRSLEQKVGINQSLKLSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVI 518

Query: 256 RLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
           + RFG++DG  K+L EIG + G+S+ER+RQ+ES A  KLK    +  L  Y
Sbjct: 519 KWRFGMDDGRMKTLQEIGEMMGVSRERIRQIESCAFRKLKNKKRAKHLQQY 569


>Medtr3g033420.1 | RNA polymerase sigma factor | HC |
           chr3:10685299-10683200 | 20130731
          Length = 403

 Score =  171 bits (433), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 100/303 (33%), Positives = 158/303 (52%), Gaps = 5/303 (1%)

Query: 5   GPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQ 64
           G  T   L+  +E++L   ++   ++E  K R+  Q G         +   +    + T+
Sbjct: 105 GSVTSGFLSSTDEAELCLCLKEGAKIEVAKQRMTEQEGNSAISRFTLENTSVDKVLINTR 164

Query: 65  LRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFA 124
                +SKE+L      +V  +A +Y G+GLS QDL+QEG++GL+   EKF P  GC+ +
Sbjct: 165 -----KSKERLARDYRGLVASIAAHYQGKGLSIQDLIQEGTIGLLHGAEKFDPNRGCKLS 219

Query: 125 SYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIG 184
           +Y YWWI+Q I +AL   SR IRLP   Y ++ K+ EA     R     PT  E+A  + 
Sbjct: 220 TYVYWWIKQGIIKALAKKSRLIRLPGEKYGMVAKIAEANNVLRRRLRRKPTYNEIAEVLN 279

Query: 185 VTVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLL 244
           V V  ++++   +R P+S+ +++    +   +EI        P+  V +QLM++    LL
Sbjct: 280 VNVSTVKLVSERSRQPISLDRSITDQSNLILKEIIPGPVEMIPEKMVERQLMKQGVVKLL 339

Query: 245 HTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLD 304
           +TL+ RE  I+RL FG+      S  EIG +  LS+ER+RQ+   AL KL+Q      L 
Sbjct: 340 NTLDKREEEIVRLYFGLNGETPLSFEEIGKLLKLSRERIRQIHGIALSKLEQNTLVDSLK 399

Query: 305 AYA 307
            Y 
Sbjct: 400 FYV 402


>Medtr1g007370.1 | RNA polymerase sigma factor | HC |
           chr1:310765-306478 | 20130731
          Length = 549

 Score =  154 bits (389), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 172/304 (56%), Gaps = 7/304 (2%)

Query: 7   ETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLR 66
           + K+ +  + E ++   ++ L  LE+++  ++    +  +++ WA+  G+    LQ QL 
Sbjct: 252 KNKRAVIAQREVEMSKGVKVLAELEKIRTAIEEDTKQVVSLSSWAETSGVDEKVLQQQLY 311

Query: 67  SGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASY 126
            G   +++LI +   +V++ A+ Y G G++ +DLLQ G +G+++  E+F    G RF++Y
Sbjct: 312 HGYYCRDELIRSTRSLVLYFARKYRGMGIALEDLLQVGYIGVLQGAERFDSTKGYRFSTY 371

Query: 127 AYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVT 186
             +WIR+++ R +  ++R I +P ++   + ++ +A+K        +P   E+A+  G++
Sbjct: 372 VQYWIRKSMSRMVAKYARGITVPWSMNKAISQIQKARKVLKNTTMKYPNDLEIAKMTGLS 431

Query: 187 VDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHT 246
           +DK+       R   SM + +       Y     D +IE+P+  V KQ +++   ++L +
Sbjct: 432 LDKIMSASHCLRTVSSMYRGI------EYMGHMPDLSIESPEETVMKQHIKKDIHDILQS 485

Query: 247 LNPRERRIIRLRFGIEDGYE-KSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDA 305
           L+ RER+II LRFG+ D ++ KSL  IG +F +SKE +R++E +AL KL+       L+ 
Sbjct: 486 LDSRERQIIILRFGLNDDHQPKSLEYIGKIFKVSKEWIRKIEKKALTKLRNETNISKLNY 545

Query: 306 YANL 309
           Y +L
Sbjct: 546 YLDL 549


>Medtr0172s0030.1 | RNA polymerase sigma factor | HC |
           scaffold0172:25315-21123 | 20130731
          Length = 504

 Score =  135 bits (340), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 95/310 (30%), Positives = 164/310 (52%), Gaps = 8/310 (2%)

Query: 2   FLWGPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYAL 61
           ++ G    +LL+  E  +L  +I+    L+E K RL+ + G EP+  + A  + +S   L
Sbjct: 192 YVKGVVCDELLSHAEVVKLSEKIKAGLSLDEHKSRLKERLGSEPSDDQVATSLKISRADL 251

Query: 62  QTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGC 121
           + ++   + ++EKL  +N+R+V+ +A+ Y   G    DL+Q G +GL++ +EKF    G 
Sbjct: 252 RAKIIECSLAREKLTMSNVRLVLSIAQRYDNMGAEMGDLVQGGLIGLLRGIEKFDSSKGF 311

Query: 122 RFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELAR 181
           + ++Y YWWIRQ + RAL  +SRT+RLP +++  L  LI   ++   E  + PT + +A+
Sbjct: 312 KISTYVYWWIRQGVSRALVENSRTLRLPAHLHERLS-LIRNAEYKLEERGITPTIDRIAK 370

Query: 182 KIGVTVDKLEILLSAARIPLSMQQTVWTDQD----TTYQEITADTAIET-PDVYVAKQLM 236
            + ++  K+     A     S+ +  +   +     T+    AD   E  P   V +  +
Sbjct: 371 SLNMSQRKVRNATEATSKVFSLDREAFPSLNGLPGDTHHSFIADKQNENIPWNVVDEWAL 430

Query: 237 RRHARNLLH-TLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLK 295
           +     L++ TL  RER IIRL +G+ D    +  +I    GLS+ERVRQ+   AL+KLK
Sbjct: 431 KEEVNRLINLTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLK 489

Query: 296 QCLASHGLDA 305
                  ++A
Sbjct: 490 HAARKREMEA 499


>Medtr0172s0030.2 | RNA polymerase sigma factor | HC |
           scaffold0172:25892-20750 | 20130731
          Length = 504

 Score =  135 bits (340), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 95/310 (30%), Positives = 164/310 (52%), Gaps = 8/310 (2%)

Query: 2   FLWGPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYAL 61
           ++ G    +LL+  E  +L  +I+    L+E K RL+ + G EP+  + A  + +S   L
Sbjct: 192 YVKGVVCDELLSHAEVVKLSEKIKAGLSLDEHKSRLKERLGSEPSDDQVATSLKISRADL 251

Query: 62  QTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGC 121
           + ++   + ++EKL  +N+R+V+ +A+ Y   G    DL+Q G +GL++ +EKF    G 
Sbjct: 252 RAKIIECSLAREKLTMSNVRLVLSIAQRYDNMGAEMGDLVQGGLIGLLRGIEKFDSSKGF 311

Query: 122 RFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELAR 181
           + ++Y YWWIRQ + RAL  +SRT+RLP +++  L  LI   ++   E  + PT + +A+
Sbjct: 312 KISTYVYWWIRQGVSRALVENSRTLRLPAHLHERLS-LIRNAEYKLEERGITPTIDRIAK 370

Query: 182 KIGVTVDKLEILLSAARIPLSMQQTVWTDQD----TTYQEITADTAIET-PDVYVAKQLM 236
            + ++  K+     A     S+ +  +   +     T+    AD   E  P   V +  +
Sbjct: 371 SLNMSQRKVRNATEATSKVFSLDREAFPSLNGLPGDTHHSFIADKQNENIPWNVVDEWAL 430

Query: 237 RRHARNLLH-TLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLK 295
           +     L++ TL  RER IIRL +G+ D    +  +I    GLS+ERVRQ+   AL+KLK
Sbjct: 431 KEEVNRLINLTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLK 489

Query: 296 QCLASHGLDA 305
                  ++A
Sbjct: 490 HAARKREMEA 499


>Medtr3g090900.1 | RNA polymerase sigma factor | HC |
           chr3:41274049-41279255 | 20130731
          Length = 514

 Score =  122 bits (305), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 86/290 (29%), Positives = 152/290 (52%), Gaps = 5/290 (1%)

Query: 11  LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 70
           +L   E + L   +Q +  L +VK  LQ +  REPT  E AD   +    ++  +  G  
Sbjct: 216 VLPSSEHAFLFKLMQPMKALLQVKDDLQKELEREPTEDEIADATNMHTTQVKKAIEVGRA 275

Query: 71  SKEKLIHANLRMVVHVAKNYL---GRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYA 127
           ++ KLI  NLR+V+ V   Y         FQDL Q G  GL+ S+++F+P    R ++Y+
Sbjct: 276 ARNKLIKHNLRLVLFVINRYFSDFANSPRFQDLCQAGVKGLITSIDRFEPNRRFRLSTYS 335

Query: 128 YWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTV 187
            +WIR  I R++ L S + R+P  + ++  ++  AK   + +    PT+EE+  K+ V+ 
Sbjct: 336 LFWIRHAIIRSMTLASFS-RVPFGLESVRAEIRRAKIELSFQLQRSPTEEEIIEKVHVSP 394

Query: 188 DKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTL 247
           ++   ++ A++  LS+     T Q+     +  D  ++  +      L+R    ++L +L
Sbjct: 395 ERYRDVMKASKPLLSLHSRHLTTQEEFINGVVDDGGVDGDNRR-QPALLRLALDDVLDSL 453

Query: 248 NPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQC 297
            P+E  +IR RFG++   +++L EI +   +S+E VR+ E +AL KLK  
Sbjct: 454 KPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMKLKHS 503


>Medtr3g090900.2 | RNA polymerase sigma factor | HC |
           chr3:41274049-41279255 | 20130731
          Length = 459

 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 107/205 (52%), Gaps = 4/205 (1%)

Query: 11  LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 70
           +L   E + L   +Q +  L +VK  LQ +  REPT  E AD   +    ++  +  G  
Sbjct: 216 VLPSSEHAFLFKLMQPMKALLQVKDDLQKELEREPTEDEIADATNMHTTQVKKAIEVGRA 275

Query: 71  SKEKLIHANLRMVVHVAKNYL---GRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYA 127
           ++ KLI  NLR+V+ V   Y         FQDL Q G  GL+ S+++F+P    R ++Y+
Sbjct: 276 ARNKLIKHNLRLVLFVINRYFSDFANSPRFQDLCQAGVKGLITSIDRFEPNRRFRLSTYS 335

Query: 128 YWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTV 187
            +WIR  I R++ L S + R+P  + ++  ++  AK   + +    PT+EE+  K+ V+ 
Sbjct: 336 LFWIRHAIIRSMTLASFS-RVPFGLESVRAEIRRAKIELSFQLQRSPTEEEIIEKVHVSP 394

Query: 188 DKLEILLSAARIPLSMQQTVWTDQD 212
           ++   ++ A++  LS+     T Q+
Sbjct: 395 ERYRDVMKASKPLLSLHSRHLTTQE 419


>Medtr1g007370.2 | RNA polymerase sigma factor | HC |
           chr1:310765-306479 | 20130731
          Length = 400

 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 84/143 (58%)

Query: 7   ETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLR 66
           + K+ +  + E ++   ++ L  LE+++  ++    +  +++ WA+  G+    LQ QL 
Sbjct: 252 KNKRAVIAQREVEMSKGVKVLAELEKIRTAIEEDTKQVVSLSSWAETSGVDEKVLQQQLY 311

Query: 67  SGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASY 126
            G   +++LI +   +V++ A+ Y G G++ +DLLQ G +G+++  E+F    G RF++Y
Sbjct: 312 HGYYCRDELIRSTRSLVLYFARKYRGMGIALEDLLQVGYIGVLQGAERFDSTKGYRFSTY 371

Query: 127 AYWWIRQTIRRALFLHSRTIRLP 149
             +WIR+++ R +  ++R I +P
Sbjct: 372 VQYWIRKSMSRMVAKYARGITVP 394


>Medtr3g090900.3 | RNA polymerase sigma factor | HC |
           chr3:41274049-41279196 | 20130731
          Length = 403

 Score = 82.8 bits (203), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/152 (34%), Positives = 80/152 (52%), Gaps = 7/152 (4%)

Query: 11  LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 70
           +L   E + L   +Q +  L +VK  LQ +  REPT  E AD   +    ++  +  G  
Sbjct: 216 VLPSSEHAFLFKLMQPMKALLQVKDDLQKELEREPTEDEIADATNMHTTQVKKAIEVGRA 275

Query: 71  SKEKLIHANLRMVVHVAKNYL---GRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYA 127
           ++ KLI  NLR+V+ V   Y         FQDL Q G  GL+ S+++F+P    R ++Y+
Sbjct: 276 ARNKLIKHNLRLVLFVINRYFSDFANSPRFQDLCQAGVKGLITSIDRFEPNRRFRLSTYS 335

Query: 128 YWWIRQTIRRALFLHSRTIRLP---ENVYTLL 156
            +WIR  I R++ L S + R+P   E+V  LL
Sbjct: 336 LFWIRHAIIRSMTLASFS-RVPFGLESVCILL 366


>Medtr3g033150.1 | RNA polymerase sigma factor | HC |
           chr3:10539070-10538516 | 20130731
          Length = 154

 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 78/153 (50%)

Query: 155 LLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKLEILLSAARIPLSMQQTVWTDQDTT 214
           ++ K+ EA     R     PT  E+A  + V V  ++++   +R P+S+ +++    +  
Sbjct: 1   MVAKIAEANNVLRRRLRRKPTYNEIAEVLNVNVSTVKLVSERSRQPISLDRSITDQSNLI 60

Query: 215 YQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGT 274
            +EI        P+  V +QLM++    LL+TL+ RE  I+RL FG+      S  EIG 
Sbjct: 61  LKEIIPGPVEMIPEKMVERQLMKQGVVKLLNTLDKREEEIVRLYFGLNGETPLSFEEIGK 120

Query: 275 VFGLSKERVRQLESRALDKLKQCLASHGLDAYA 307
           +  LS+ER+RQ+   AL KL+Q      L  Y 
Sbjct: 121 LLKLSRERIRQIHGIALSKLRQNTIVDSLKFYV 153