Miyakogusa Predicted Gene
- Lj1g3v4591010.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v4591010.1 Non Chatacterized Hit- tr|I3SER7|I3SER7_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,100,0,no
description,NULL; no description,Winged helix-turn-helix transcription
repressor DNA-binding;
SIG,NODE_31328_length_2005_cov_71.025932.path1.1
(311 letters)
Database: trembl
41,451,118 sequences; 13,208,986,710 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
I3SER7_LOTJA (tr|I3SER7) Uncharacterized protein OS=Lotus japoni... 642 0.0
G7L3V2_MEDTR (tr|G7L3V2) RNA polymerase sigma factor rpoD OS=Med... 498 e-138
I1NAA3_SOYBN (tr|I1NAA3) Uncharacterized protein OS=Glycine max ... 497 e-138
I1JPP1_SOYBN (tr|I1JPP1) Uncharacterized protein OS=Glycine max ... 492 e-137
I1L8Z5_SOYBN (tr|I1L8Z5) Uncharacterized protein OS=Glycine max ... 486 e-135
M5WAB7_PRUPE (tr|M5WAB7) Uncharacterized protein OS=Prunus persi... 481 e-133
D7TQP0_VITVI (tr|D7TQP0) Putative uncharacterized protein OS=Vit... 481 e-133
B9MTE1_POPTR (tr|B9MTE1) Predicted protein OS=Populus trichocarp... 480 e-133
B9S0J0_RICCO (tr|B9S0J0) RNA polymerase sigma factor rpoD, putat... 480 e-133
I1LZ84_SOYBN (tr|I1LZ84) Uncharacterized protein OS=Glycine max ... 479 e-133
G7IA88_MEDTR (tr|G7IA88) RNA polymerase sigma factor OS=Medicago... 450 e-124
K4CQJ3_SOLLC (tr|K4CQJ3) Uncharacterized protein OS=Solanum lyco... 447 e-123
M1BY22_SOLTU (tr|M1BY22) Uncharacterized protein OS=Solanum tube... 445 e-123
M1BY21_SOLTU (tr|M1BY21) Uncharacterized protein OS=Solanum tube... 443 e-122
E4MX68_THEHA (tr|E4MX68) mRNA, clone: RTFL01-17-E04 OS=Thellungi... 439 e-121
D7LJA3_ARALL (tr|D7LJA3) RNA polymerase sigma-70 factor OS=Arabi... 437 e-120
R0HNL5_9BRAS (tr|R0HNL5) Uncharacterized protein OS=Capsella rub... 436 e-120
M4DL32_BRARP (tr|M4DL32) Uncharacterized protein OS=Brassica rap... 436 e-120
M1BY20_SOLTU (tr|M1BY20) Uncharacterized protein OS=Solanum tube... 434 e-119
M0RSY5_MUSAM (tr|M0RSY5) Uncharacterized protein OS=Musa acumina... 399 e-109
G7L2W1_MEDTR (tr|G7L2W1) RNA polymerase sigma factor rpoD OS=Med... 369 e-100
I1K2F4_SOYBN (tr|I1K2F4) Uncharacterized protein (Fragment) OS=G... 349 7e-94
K4A7Y8_SETIT (tr|K4A7Y8) Uncharacterized protein OS=Setaria ital... 333 6e-89
I1GKK0_BRADI (tr|I1GKK0) Uncharacterized protein OS=Brachypodium... 329 7e-88
J3MRH6_ORYBR (tr|J3MRH6) Uncharacterized protein OS=Oryza brachy... 325 1e-86
M0WB57_HORVD (tr|M0WB57) Uncharacterized protein OS=Hordeum vulg... 324 2e-86
M0WB51_HORVD (tr|M0WB51) Uncharacterized protein OS=Hordeum vulg... 324 2e-86
M0WB53_HORVD (tr|M0WB53) Uncharacterized protein OS=Hordeum vulg... 324 3e-86
M0WB48_HORVD (tr|M0WB48) Uncharacterized protein OS=Hordeum vulg... 324 3e-86
Q84LK8_ORYSJ (tr|Q84LK8) Os08g0242800 protein OS=Oryza sativa su... 323 4e-86
I1QGT9_ORYGL (tr|I1QGT9) Uncharacterized protein OS=Oryza glaber... 323 4e-86
Q9ZPL0_MAIZE (tr|Q9ZPL0) Sigma factor SIG6 OS=Zea mays GN=sig6 P... 319 1e-84
B4FJ30_MAIZE (tr|B4FJ30) SIGMA70-like transcription factor OS=Ze... 318 1e-84
M8A8U2_TRIUA (tr|M8A8U2) RNA polymerase sigma factor rpoD OS=Tri... 317 3e-84
A3BR19_ORYSJ (tr|A3BR19) Putative uncharacterized protein OS=Ory... 314 3e-83
B8BC85_ORYSI (tr|B8BC85) Putative uncharacterized protein OS=Ory... 313 4e-83
R0FW66_9BRAS (tr|R0FW66) Uncharacterized protein OS=Capsella rub... 304 2e-80
M1BY23_SOLTU (tr|M1BY23) Uncharacterized protein OS=Solanum tube... 303 6e-80
M8BZZ6_AEGTA (tr|M8BZZ6) RNA polymerase sigma factor rpoD OS=Aeg... 300 4e-79
Q9AYR7_9BRYO (tr|Q9AYR7) PpSIG2 OS=Physcomitrella patens GN=Sig2... 286 5e-75
E1C9M6_PHYPA (tr|E1C9M6) Plastid sigma facor SIG2 OS=Physcomitre... 286 5e-75
K0ISZ8_MARPO (tr|K0ISZ8) Plastid RNA polymerase sigma factor 2 O... 285 2e-74
A9RTR4_PHYPA (tr|A9RTR4) Uncharacterized protein OS=Physcomitrel... 270 5e-70
B8LQB0_PICSI (tr|B8LQB0) Putative uncharacterized protein OS=Pic... 257 3e-66
B8LLW6_PICSI (tr|B8LLW6) Putative uncharacterized protein OS=Pic... 257 4e-66
K8GQ72_9CYAN (tr|K8GQ72) RNA polymerase sigma factor OS=Oscillat... 256 7e-66
B7KDV7_CYAP7 (tr|B7KDV7) RNA polymerase sigma factor OS=Cyanothe... 256 9e-66
E0UHZ3_CYAP2 (tr|E0UHZ3) RNA polymerase sigma factor OS=Cyanothe... 255 1e-65
F5UG89_9CYAN (tr|F5UG89) RNA polymerase sigma factor OS=Microcol... 254 3e-65
K9ZHC6_ANACC (tr|K9ZHC6) RNA polymerase sigma factor OS=Anabaena... 254 4e-65
K9VRX0_9CYAN (tr|K9VRX0) RNA polymerase sigma factor OS=Oscillat... 253 5e-65
G6FUP1_9CYAN (tr|G6FUP1) RNA polymerase sigma factor OS=Fischere... 253 5e-65
C7QR23_CYAP0 (tr|C7QR23) RNA polymerase sigma factor OS=Cyanothe... 253 6e-65
B7K1V2_CYAP8 (tr|B7K1V2) RNA polymerase sigma factor OS=Cyanothe... 253 6e-65
A0ZJC3_NODSP (tr|A0ZJC3) RNA polymerase sigma factor OS=Nodulari... 253 6e-65
K9WH45_9CYAN (tr|K9WH45) RNA polymerase sigma factor OS=Microcol... 253 7e-65
F4XPJ0_9CYAN (tr|F4XPJ0) RNA polymerase sigma factor OS=Moorea p... 253 8e-65
K9S7N4_9CYAN (tr|K9S7N4) RNA polymerase sigma factor OS=Geitleri... 253 9e-65
B4WPM0_9SYNE (tr|B4WPM0) RNA polymerase sigma factor OS=Synechoc... 252 1e-64
K9T849_9CYAN (tr|K9T849) RNA polymerase sigma factor OS=Pleuroca... 252 1e-64
K9Q8G4_9NOSO (tr|K9Q8G4) RNA polymerase sigma factor OS=Nostoc s... 252 1e-64
Q9L4T2_NOSP7 (tr|Q9L4T2) RNA polymerase sigma factor OS=Nostoc p... 251 2e-64
A9RTR6_PHYPA (tr|A9RTR6) Uncharacterized protein OS=Physcomitrel... 251 2e-64
B4W0Y8_9CYAN (tr|B4W0Y8) RNA polymerase sigma factor OS=Coleofas... 251 3e-64
K9PJQ4_9CYAN (tr|K9PJQ4) RNA polymerase sigma factor OS=Calothri... 251 3e-64
K9YFR5_HALP7 (tr|K9YFR5) RNA polymerase sigma factor OS=Halothec... 251 3e-64
K9TM07_9CYAN (tr|K9TM07) RNA polymerase sigma factor OS=Oscillat... 251 3e-64
K9XHA2_9CHRO (tr|K9XHA2) RNA polymerase sigma factor OS=Gloeocap... 250 4e-64
D7E0K7_NOSA0 (tr|D7E0K7) RNA polymerase sigma factor OS=Nostoc a... 250 4e-64
K9XY46_STAC7 (tr|K9XY46) RNA polymerase sigma factor OS=Stanieri... 250 4e-64
K9QTZ2_NOSS7 (tr|K9QTZ2) RNA polymerase sigma factor OS=Nostoc s... 250 5e-64
K9Q1H6_9CYAN (tr|K9Q1H6) RNA polymerase sigma factor OS=Leptolyn... 249 7e-64
Q3MDA3_ANAVT (tr|Q3MDA3) RNA polymerase sigma factor OS=Anabaena... 249 8e-64
M1WSP5_9NOST (tr|M1WSP5) RNA polymerase sigma factor OS=Richelia... 249 9e-64
Q7U5C4_SYNPX (tr|Q7U5C4) RNA polymerase sigma factor OS=Synechoc... 249 1e-63
D8G4S3_9CYAN (tr|D8G4S3) RNA polymerase sigma factor OS=Oscillat... 249 1e-63
Q05YJ7_9SYNE (tr|Q05YJ7) RNA polymerase sigma factor OS=Synechoc... 248 1e-63
Q3AWQ6_SYNS9 (tr|Q3AWQ6) RNA polymerase sigma factor OS=Synechoc... 248 2e-63
K9X1I3_9NOST (tr|K9X1I3) RNA polymerase sigma factor OS=Cylindro... 248 2e-63
K9TYL7_9CYAN (tr|K9TYL7) RNA polymerase sigma factor OS=Chroococ... 248 2e-63
D0CLH5_9SYNE (tr|D0CLH5) RNA polymerase sigma factor OS=Synechoc... 248 2e-63
Q3ALS7_SYNSC (tr|Q3ALS7) RNA polymerase sigma factor OS=Synechoc... 247 3e-63
K9R7S3_9CYAN (tr|K9R7S3) RNA polymerase sigma factor OS=Rivulari... 247 4e-63
D4TQC8_9NOST (tr|D4TQC8) RNA polymerase sigma factor OS=Raphidio... 247 4e-63
K9W354_9CYAN (tr|K9W354) RNA polymerase sigma factor OS=Crinaliu... 247 5e-63
K9V2E9_9CYAN (tr|K9V2E9) RNA polymerase sigma factor OS=Calothri... 246 6e-63
Q10UV2_TRIEI (tr|Q10UV2) RNA polymerase sigma factor OS=Trichode... 246 1e-62
K9YRT3_DACSA (tr|K9YRT3) RNA polymerase sigma factor OS=Dactyloc... 246 1e-62
A9BEB7_PROM4 (tr|A9BEB7) RNA polymerase sigma factor OS=Prochlor... 245 1e-62
G4FIM1_9SYNE (tr|G4FIM1) RNA polymerase sigma factor OS=Synechoc... 245 1e-62
Q59965_SYNP2 (tr|Q59965) RNA polymerase sigma factor OS=Synechoc... 245 1e-62
A4CRY9_SYNPV (tr|A4CRY9) RNA polymerase sigma factor OS=Synechoc... 245 1e-62
D4TFK7_9NOST (tr|D4TFK7) RNA polymerase sigma factor OS=Cylindro... 245 2e-62
A5GJC2_SYNPW (tr|A5GJC2) RNA polymerase sigma factor OS=Synechoc... 245 2e-62
F2HHX7_9CRYP (tr|F2HHX7) RNA-polymerase sigma factor OS=Cryptomo... 244 2e-62
L8LB48_9CYAN (tr|L8LB48) RNA polymerase sigma factor OS=Leptolyn... 244 3e-62
M0STE2_MUSAM (tr|M0STE2) Uncharacterized protein OS=Musa acumina... 244 3e-62
Q0I8I7_SYNS3 (tr|Q0I8I7) RNA polymerase sigma factor OS=Synechoc... 244 4e-62
B9SDA3_RICCO (tr|B9SDA3) RNA polymerase sigma factor rpoD1, puta... 244 4e-62
L8L5U0_9SYNC (tr|L8L5U0) RNA polymerase sigma factor OS=Synechoc... 244 4e-62
B5ILG7_9CHRO (tr|B5ILG7) RNA polymerase sigma factor OS=Cyanobiu... 244 4e-62
Q46GS6_PROMT (tr|Q46GS6) RNA polymerase sigma factor OS=Prochlor... 243 6e-62
L8M7W7_9CYAN (tr|L8M7W7) RNA polymerase sigma factor OS=Xenococc... 243 6e-62
D7UB90_VITVI (tr|D7UB90) Putative uncharacterized protein OS=Vit... 243 6e-62
A2C0V5_PROM1 (tr|A2C0V5) RNA polymerase sigma factor OS=Prochlor... 243 6e-62
A5GSD3_SYNR3 (tr|A5GSD3) RNA polymerase sigma factor OS=Synechoc... 242 1e-61
K7W4G2_9NOST (tr|K7W4G2) RNA polymerase sigma factor OS=Anabaena... 242 1e-61
Q7V698_PROMM (tr|Q7V698) RNA polymerase sigma factor OS=Prochlor... 242 1e-61
B8HPM3_CYAP4 (tr|B8HPM3) RNA polymerase sigma factor OS=Cyanothe... 242 2e-61
L8LPU5_9CHRO (tr|L8LPU5) RNA polymerase sigma factor OS=Gloeocap... 241 2e-61
A9BK56_HEMAN (tr|A9BK56) RpoD OS=Hemiselmis andersenii GN=HAN_1g... 241 2e-61
Q8S9D0_GUITH (tr|Q8S9D0) RNA polymerase sigma factor OS=Guillard... 241 2e-61
Q98RZ3_GUITH (tr|Q98RZ3) RNA-polymerase sigma factor OS=Guillard... 241 2e-61
B0CDC4_ACAM1 (tr|B0CDC4) RNA polymerase sigma factor OS=Acaryoch... 241 3e-61
A2C7M0_PROM3 (tr|A2C7M0) RNA polymerase sigma factor OS=Prochlor... 241 3e-61
J7G2H9_9CRYP (tr|J7G2H9) RNA-polymerase sigma factor OS=Chroomon... 240 4e-61
Q7VD88_PROMA (tr|Q7VD88) RNA polymerase sigma factor OS=Prochlor... 240 4e-61
K6DHZ3_SPIPL (tr|K6DHZ3) RNA polymerase sigma factor OS=Arthrosp... 240 5e-61
D5A0H0_SPIPL (tr|D5A0H0) RNA polymerase sigma factor OS=Arthrosp... 240 5e-61
H1WE70_9CYAN (tr|H1WE70) RNA polymerase sigma factor OS=Arthrosp... 240 5e-61
B5VWQ7_SPIMA (tr|B5VWQ7) RNA polymerase sigma factor OS=Arthrosp... 240 5e-61
K1X4L7_SPIPL (tr|K1X4L7) RNA polymerase sigma factor OS=Arthrosp... 240 6e-61
Q5N3Q1_SYNP6 (tr|Q5N3Q1) RNA polymerase sigma factor OS=Synechoc... 240 6e-61
A3Z5L5_9SYNE (tr|A3Z5L5) RNA polymerase sigma factor OS=Synechoc... 239 7e-61
R0IC61_9BRAS (tr|R0IC61) Uncharacterized protein OS=Capsella rub... 239 7e-61
A0YTZ3_LYNSP (tr|A0YTZ3) RNA polymerase sigma factor OS=Lyngbya ... 239 8e-61
B1X5Q2_PAUCH (tr|B1X5Q2) RNA polymerase sigma factor OS=Paulinel... 239 8e-61
A9RG56_PHYPA (tr|A9RG56) Uncharacterized protein OS=Physcomitrel... 239 9e-61
Q05RP2_9SYNE (tr|Q05RP2) RNA polymerase sigma factor OS=Synechoc... 239 1e-60
K9Z8E6_CYAAP (tr|K9Z8E6) RNA polymerase sigma factor OS=Cyanobac... 239 1e-60
K9UM88_9CHRO (tr|K9UM88) RNA polymerase sigma factor OS=Chamaesi... 239 1e-60
K7KHD7_SOYBN (tr|K7KHD7) Uncharacterized protein OS=Glycine max ... 239 1e-60
K9SJF8_9CYAN (tr|K9SJF8) RNA polymerase sigma factor OS=Pseudana... 238 2e-60
K9YJV2_CYASC (tr|K9YJV2) RNA polymerase sigma factor OS=Cyanobac... 238 2e-60
A2BVF8_PROM5 (tr|A2BVF8) RNA polymerase sigma factor OS=Prochlor... 238 2e-60
K9RSJ7_SYNP3 (tr|K9RSJ7) RNA polymerase sigma factor OS=Synechoc... 238 2e-60
Q31C37_PROM9 (tr|Q31C37) RNA polymerase sigma factor OS=Prochlor... 238 3e-60
A8G3L2_PROM2 (tr|A8G3L2) RNA polymerase sigma factor OS=Prochlor... 237 3e-60
A2BPX8_PROMS (tr|A2BPX8) RNA polymerase sigma factor OS=Prochlor... 237 4e-60
B9P0P2_PROMR (tr|B9P0P2) RNA polymerase sigma factor OS=Prochlor... 237 4e-60
A3PBM1_PROM0 (tr|A3PBM1) RNA polymerase sigma factor OS=Prochlor... 237 4e-60
K9P2V4_CYAGP (tr|K9P2V4) RNA polymerase sigma factor OS=Cyanobiu... 237 5e-60
D7KIT0_ARALL (tr|D7KIT0) Putative uncharacterized protein OS=Ara... 236 6e-60
R7QDV9_CHOCR (tr|R7QDV9) Stackhouse genomic scaffold, scaffold_2... 236 6e-60
Q7V2I0_PROMP (tr|Q7V2I0) RNA polymerase sigma factor OS=Prochlor... 236 8e-60
A4RYI5_OSTLU (tr|A4RYI5) Predicted protein OS=Ostreococcus lucim... 236 1e-59
K9SYS4_9SYNE (tr|K9SYS4) RNA polymerase sigma factor OS=Synechoc... 235 1e-59
K4AY41_SOLLC (tr|K4AY41) Uncharacterized protein OS=Solanum lyco... 235 2e-59
Q710C3_SPIOL (tr|Q710C3) Sigma factor OS=Spinacia oleracea GN=si... 234 3e-59
Q8DL79_THEEB (tr|Q8DL79) RNA polymerase sigma factor OS=Thermosy... 234 4e-59
B9IPZ1_POPTR (tr|B9IPZ1) Predicted protein OS=Populus trichocarp... 233 5e-59
K9EXS2_9CYAN (tr|K9EXS2) RNA polymerase sigma factor OS=Leptolyn... 233 6e-59
M4DQ26_BRARP (tr|M4DQ26) Uncharacterized protein OS=Brassica rap... 232 1e-58
M1D2M3_SOLTU (tr|M1D2M3) Uncharacterized protein OS=Solanum tube... 232 1e-58
A3IZB7_9CHRO (tr|A3IZB7) RNA polymerase sigma factor OS=Cyanothe... 231 2e-58
L8N2V5_9CYAN (tr|L8N2V5) RNA polymerase sigma factor OS=Pseudana... 231 3e-58
A3YZH3_9SYNE (tr|A3YZH3) RNA polymerase sigma factor OS=Synechoc... 231 4e-58
B1WQ73_CYAA5 (tr|B1WQ73) RNA polymerase sigma factor OS=Cyanothe... 230 4e-58
G6GV95_9CHRO (tr|G6GV95) RNA polymerase sigma factor OS=Cyanothe... 230 4e-58
E0UE62_CYAP2 (tr|E0UE62) RNA polymerase sigma factor OS=Cyanothe... 230 4e-58
Q2JT33_SYNJA (tr|Q2JT33) RNA polymerase sigma factor OS=Synechoc... 230 5e-58
I4G7M0_MICAE (tr|I4G7M0) RNA polymerase sigma factor OS=Microcys... 229 7e-58
I4GV22_MICAE (tr|I4GV22) RNA polymerase sigma factor OS=Microcys... 229 7e-58
L8NRV5_MICAE (tr|L8NRV5) RNA polymerase sigma factor OS=Microcys... 229 7e-58
A8YCV8_MICAE (tr|A8YCV8) RNA polymerase sigma factor OS=Microcys... 229 7e-58
I4HZ12_MICAE (tr|I4HZ12) RNA polymerase sigma factor OS=Microcys... 229 7e-58
I4GN30_MICAE (tr|I4GN30) RNA polymerase sigma factor OS=Microcys... 229 7e-58
I4GB76_MICAE (tr|I4GB76) RNA polymerase sigma factor OS=Microcys... 229 7e-58
I4FFA4_MICAE (tr|I4FFA4) RNA polymerase sigma factor OS=Microcys... 229 7e-58
B1PVV9_MICAE (tr|B1PVV9) RNA polymerase sigma factor OS=Microcys... 229 7e-58
I4H3L6_MICAE (tr|I4H3L6) RNA polymerase sigma factor OS=Microcys... 229 7e-58
A8YBI5_MICAE (tr|A8YBI5) RNA polymerase sigma factor OS=Microcys... 229 7e-58
Q4BYC5_CROWT (tr|Q4BYC5) RNA polymerase sigma factor OS=Crocosph... 229 7e-58
I4FLI6_MICAE (tr|I4FLI6) RNA polymerase sigma factor OS=Microcys... 229 8e-58
I4I0R7_MICAE (tr|I4I0R7) RNA polymerase sigma factor OS=Microcys... 229 8e-58
I4GQP9_MICAE (tr|I4GQP9) RNA polymerase sigma factor OS=Microcys... 229 8e-58
B0JU57_MICAN (tr|B0JU57) RNA polymerase sigma factor OS=Microcys... 229 8e-58
M4EPL2_BRARP (tr|M4EPL2) Uncharacterized protein OS=Brassica rap... 229 8e-58
K9EWZ9_9CYAN (tr|K9EWZ9) RNA polymerase sigma factor OS=Leptolyn... 229 8e-58
M5VUM6_PRUPE (tr|M5VUM6) Uncharacterized protein OS=Prunus persi... 229 8e-58
L7E8N7_MICAE (tr|L7E8N7) RNA polymerase sigma factor OS=Microcys... 229 9e-58
I4HMJ3_MICAE (tr|I4HMJ3) RNA polymerase sigma factor OS=Microcys... 229 9e-58
I4GJA8_MICAE (tr|I4GJA8) RNA polymerase sigma factor OS=Microcys... 229 9e-58
I4FIV5_MICAE (tr|I4FIV5) RNA polymerase sigma factor OS=Microcys... 229 9e-58
I4FPN8_MICAE (tr|I4FPN8) RNA polymerase sigma factor OS=Microcys... 229 9e-58
G7J988_MEDTR (tr|G7J988) RNA polymerase sigma factor rpoD OS=Med... 229 9e-58
I4IWN2_MICAE (tr|I4IWN2) RNA polymerase sigma factor OS=Microcys... 229 9e-58
I4IAI2_9CHRO (tr|I4IAI2) RNA polymerase sigma factor OS=Microcys... 229 1e-57
I4H4V9_MICAE (tr|I4H4V9) RNA polymerase sigma factor OS=Microcys... 229 1e-57
Q9MTH3_SINAL (tr|Q9MTH3) Sigma factor 2 (Precursor) OS=Sinapis a... 229 1e-57
L8LL46_9CHRO (tr|L8LL46) RNA polymerase sigma factor OS=Gloeocap... 229 1e-57
M0TIC0_MUSAM (tr|M0TIC0) Uncharacterized protein OS=Musa acumina... 229 1e-57
I4IUY9_MICAE (tr|I4IUY9) RNA polymerase sigma factor OS=Microcys... 229 1e-57
B0JGK3_MICAN (tr|B0JGK3) RNA polymerase sigma factor OS=Microcys... 229 1e-57
I4HLE0_MICAE (tr|I4HLE0) RNA polymerase sigma factor OS=Microcys... 229 1e-57
Q017N3_OSTTA (tr|Q017N3) SigA (ISS) OS=Ostreococcus tauri GN=Ot0... 229 1e-57
C1MUC7_MICPC (tr|C1MUC7) Predicted protein OS=Micromonas pusilla... 228 1e-57
G5JAP6_CROWT (tr|G5JAP6) RNA polymerase sigma factor OS=Crocosph... 228 2e-57
B9I6F1_POPTR (tr|B9I6F1) Predicted protein OS=Populus trichocarp... 228 2e-57
I4IFY1_9CHRO (tr|I4IFY1) RNA polymerase sigma factor OS=Microcys... 228 2e-57
Q7NHG5_GLOVI (tr|Q7NHG5) RNA polymerase sigma factor OS=Gloeobac... 227 4e-57
M0TES6_MUSAM (tr|M0TES6) Uncharacterized protein OS=Musa acumina... 227 4e-57
B7K8N4_CYAP7 (tr|B7K8N4) RNA polymerase sigma factor OS=Cyanothe... 227 5e-57
B8C130_THAPS (tr|B8C130) RNA polymerase (Fragment) OS=Thalassios... 226 8e-57
L8AT57_9SYNC (tr|L8AT57) RNA polymerase sigma factor OS=Synechoc... 226 1e-56
Q4C7J7_CROWT (tr|Q4C7J7) RNA polymerase sigma factor OS=Crocosph... 226 1e-56
G5JAB0_CROWT (tr|G5JAB0) RNA polymerase sigma factor OS=Crocosph... 226 1e-56
Q55525_SYNY3 (tr|Q55525) RNA polymerase sigma factor OS=Synechoc... 225 1e-56
F7URP3_SYNYG (tr|F7URP3) RNA polymerase sigma factor OS=Synechoc... 225 1e-56
M1MBB9_9SYNC (tr|M1MBB9) RNA polymerase sigma factor OS=Synechoc... 225 1e-56
H0PFH3_9SYNC (tr|H0PFH3) RNA polymerase sigma factor OS=Synechoc... 225 1e-56
H0PAJ0_9SYNC (tr|H0PAJ0) RNA polymerase sigma factor OS=Synechoc... 225 1e-56
H0NY38_9SYNC (tr|H0NY38) RNA polymerase sigma factor OS=Synechoc... 225 1e-56
B2IZR4_NOSP7 (tr|B2IZR4) RNA polymerase sigma factor OS=Nostoc p... 224 2e-56
B1WS32_CYAA5 (tr|B1WS32) RNA polymerase sigma factor OS=Cyanothe... 224 4e-56
G6GVW3_9CHRO (tr|G6GVW3) RNA polymerase sigma factor OS=Cyanothe... 224 4e-56
B8HQG4_CYAP4 (tr|B8HQG4) RNA polymerase sigma factor OS=Cyanothe... 223 5e-56
F7ULM9_SYNYG (tr|F7ULM9) RNA polymerase sigma factor OS=Synechoc... 223 6e-56
M1MNH4_9SYNC (tr|M1MNH4) RNA polymerase sigma factor OS=Synechoc... 223 6e-56
H0PJ89_9SYNC (tr|H0PJ89) RNA polymerase sigma factor OS=Synechoc... 223 6e-56
H0PED4_9SYNC (tr|H0PED4) RNA polymerase sigma factor OS=Synechoc... 223 6e-56
H0P220_9SYNC (tr|H0P220) RNA polymerase sigma factor OS=Synechoc... 223 6e-56
K9T8P2_9CYAN (tr|K9T8P2) RNA polymerase sigma factor OS=Pleuroca... 223 7e-56
A3ISY9_9CHRO (tr|A3ISY9) RNA polymerase sigma factor OS=Cyanothe... 223 7e-56
Q2JIA4_SYNJB (tr|Q2JIA4) RNA polymerase sigma factor OS=Synechoc... 223 7e-56
D3EMZ4_UCYNA (tr|D3EMZ4) RNA polymerase sigma factor OS=cyanobac... 223 7e-56
D8FXC8_9CYAN (tr|D8FXC8) RNA polymerase sigma factor OS=Oscillat... 223 7e-56
C7QM79_CYAP0 (tr|C7QM79) RNA polymerase sigma factor OS=Cyanothe... 222 1e-55
K9Z5T0_CYAAP (tr|K9Z5T0) RNA polymerase sigma factor OS=Cyanobac... 222 1e-55
Q2JS52_SYNJA (tr|Q2JS52) RNA polymerase sigma factor OS=Synechoc... 222 1e-55
B2J7M4_NOSP7 (tr|B2J7M4) RNA polymerase sigma factor OS=Nostoc p... 222 2e-55
B4WSK5_9SYNE (tr|B4WSK5) RNA polymerase sigma factor, cyanobacte... 221 2e-55
C1E4E8_MICSR (tr|C1E4E8) Predicted protein OS=Micromonas sp. (st... 221 2e-55
K9SDK2_9CYAN (tr|K9SDK2) RNA polymerase sigma factor OS=Geitleri... 221 2e-55
K9SH00_9CYAN (tr|K9SH00) RNA polymerase sigma factor OS=Pseudana... 221 3e-55
B7K407_CYAP8 (tr|B7K407) RNA polymerase sigma factor OS=Cyanothe... 221 4e-55
K9U8Z9_9CYAN (tr|K9U8Z9) RNA polymerase sigma factor OS=Chroococ... 220 4e-55
Q10XF4_TRIEI (tr|Q10XF4) RNA polymerase, sigma 28 subunit OS=Tri... 220 5e-55
Q2JJL6_SYNJB (tr|Q2JJL6) RNA polymerase sigma factor OS=Synechoc... 219 8e-55
B2IZW2_NOSP7 (tr|B2IZW2) RNA polymerase sigma factor OS=Nostoc p... 219 1e-54
H1WB17_9CYAN (tr|H1WB17) RNA polymerase sigma factor OS=Arthrosp... 219 1e-54
K9RCV1_9CYAN (tr|K9RCV1) RNA polymerase sigma factor OS=Rivulari... 219 1e-54
L8M4M2_9CYAN (tr|L8M4M2) RNA polymerase sigma factor OS=Xenococc... 219 1e-54
B4W0H2_9CYAN (tr|B4W0H2) RNA polymerase sigma factor OS=Coleofas... 218 2e-54
K9YNZ9_CYASC (tr|K9YNZ9) RNA polymerase sigma factor OS=Cyanobac... 218 2e-54
Q8DM59_THEEB (tr|Q8DM59) Group2 RNA polymerase sigma factor OS=T... 218 2e-54
D5A2C0_SPIPL (tr|D5A2C0) RNA polymerase sigma factor OS=Arthrosp... 218 2e-54
L8N838_9CYAN (tr|L8N838) RNA polymerase sigma factor OS=Pseudana... 218 2e-54
K9XMI4_STAC7 (tr|K9XMI4) RNA polymerase sigma factor OS=Stanieri... 218 2e-54
K6DZP2_SPIPL (tr|K6DZP2) RNA polymerase sigma factor OS=Arthrosp... 218 2e-54
K8GTQ7_9CYAN (tr|K8GTQ7) RNA polymerase sigma factor OS=Oscillat... 218 3e-54
K9ZCE5_ANACC (tr|K9ZCE5) RNA polymerase sigma factor OS=Anabaena... 218 3e-54
D4TH69_9NOST (tr|D4TH69) RNA polymerase sigma factor OS=Cylindro... 217 4e-54
D4TMC1_9NOST (tr|D4TMC1) RNA polymerase sigma factor OS=Raphidio... 217 5e-54
B5W8F6_SPIMA (tr|B5W8F6) RNA polymerase sigma factor OS=Arthrosp... 217 5e-54
B4WG00_9SYNE (tr|B4WG00) RNA polymerase sigma factor OS=Synechoc... 217 5e-54
K9Q859_9NOSO (tr|K9Q859) RNA polymerase sigma factor OS=Nostoc s... 216 6e-54
K9V799_9CYAN (tr|K9V799) RNA polymerase sigma factor OS=Calothri... 216 8e-54
A0YXP5_LYNSP (tr|A0YXP5) RNA polymerase sigma factor OS=Lyngbya ... 216 8e-54
K9WSJ0_9NOST (tr|K9WSJ0) RNA polymerase sigma factor OS=Cylindro... 216 8e-54
G6FPH6_9CYAN (tr|G6FPH6) RNA polymerase sigma factor OS=Fischere... 216 9e-54
L8L915_9CYAN (tr|L8L915) RNA polymerase sigma factor, cyanobacte... 216 1e-53
K9TEU2_9CYAN (tr|K9TEU2) RNA polymerase sigma factor, cyanobacte... 216 1e-53
L8LWE0_9CYAN (tr|L8LWE0) RNA polymerase sigma factor, cyanobacte... 215 1e-53
K9SR03_9SYNE (tr|K9SR03) RNA polymerase sigma factor OS=Synechoc... 215 1e-53
K1VQH8_SPIPL (tr|K1VQH8) RNA polymerase sigma factor OS=Arthrosp... 215 2e-53
K2A8X5_9BACT (tr|K2A8X5) RNA polymerase sigma factor OS=uncultur... 215 2e-53
I4IAS0_9CHRO (tr|I4IAS0) RNA polymerase sigma factor rpoD3 OS=Mi... 215 2e-53
L8KU07_9SYNC (tr|L8KU07) RNA polymerase sigma factor OS=Synechoc... 214 2e-53
K9TQ38_9CYAN (tr|K9TQ38) RNA polymerase sigma factor OS=Oscillat... 214 2e-53
A0ZFS4_NODSP (tr|A0ZFS4) RNA polymerase sigma factor OS=Nodulari... 214 3e-53
K9QUH7_NOSS7 (tr|K9QUH7) RNA polymerase sigma factor OS=Nostoc s... 214 3e-53
K7WMI0_9NOST (tr|K7WMI0) RNA polymerase sigma factor OS=Anabaena... 214 3e-53
C7QVB1_CYAP0 (tr|C7QVB1) RNA polymerase, sigma 70 subunit, RpoD ... 214 3e-53
B7JX54_CYAP8 (tr|B7JX54) RNA polymerase, sigma 70 subunit, RpoD ... 214 3e-53
K8F5W9_9CHLO (tr|K8F5W9) RNA polymerase sigma factor RpoD OS=Bat... 214 4e-53
B1XNJ6_SYNP2 (tr|B1XNJ6) RNA polymerase sigma factor OS=Synechoc... 214 4e-53
P96033_SYNSP (tr|P96033) RNA polymerase sigma factor OS=Synechoc... 214 4e-53
K9RTH4_SYNP3 (tr|K9RTH4) RNA polymerase sigma factor, cyanobacte... 214 4e-53
K9X9V9_9CHRO (tr|K9X9V9) RNA polymerase sigma factor OS=Gloeocap... 214 5e-53
B1XQ38_SYNP2 (tr|B1XQ38) Sigma factor OS=Synechococcus sp. (stra... 213 6e-53
K9XK63_9CHRO (tr|K9XK63) RNA polymerase sigma factor OS=Gloeocap... 213 6e-53
Q5MZI5_SYNP6 (tr|Q5MZI5) Group2 RNA polymerase sigma factor RpoD... 213 7e-53
K9XV83_STAC7 (tr|K9XV83) RNA polymerase, sigma 70 subunit, RpoD ... 213 7e-53
K9PTA0_9CYAN (tr|K9PTA0) RNA polymerase sigma factor OS=Calothri... 213 7e-53
A0ZN70_NODSP (tr|A0ZN70) RNA polymerase sigma factor OS=Nodulari... 213 8e-53
K9VQV7_9CYAN (tr|K9VQV7) RNA polymerase sigma factor OS=Oscillat... 213 8e-53
D7E4D5_NOSA0 (tr|D7E4D5) RNA polymerase sigma factor OS=Nostoc a... 213 8e-53
F5UG18_9CYAN (tr|F5UG18) RNA polymerase sigma factor OS=Microcol... 213 8e-53
K9TZY6_9CYAN (tr|K9TZY6) RNA polymerase sigma factor OS=Chroococ... 213 8e-53
D7E0T9_NOSA0 (tr|D7E0T9) RNA polymerase, sigma 70 subunit, RpoD ... 213 8e-53
K9EMY3_9CYAN (tr|K9EMY3) RNA polymerase sigma factor, cyanobacte... 213 9e-53
Q7NEW6_GLOVI (tr|Q7NEW6) RNA polymerase sigma factor OS=Gloeobac... 213 9e-53
B0C249_ACAM1 (tr|B0C249) RNA polymerase sigma factor OS=Acaryoch... 213 1e-52
F5UJ50_9CYAN (tr|F5UJ50) RNA polymerase, sigma 70 subunit, RpoD ... 213 1e-52
K9QHM1_9NOSO (tr|K9QHM1) RNA polymerase, sigma 70 subunit, RpoD ... 213 1e-52
F2CZB8_HORVD (tr|F2CZB8) Predicted protein OS=Hordeum vulgare va... 213 1e-52
K9QYS3_NOSS7 (tr|K9QYS3) RNA polymerase sigma factor, cyanobacte... 212 1e-52
K9XM05_9CHRO (tr|K9XM05) RNA polymerase, sigma 70 subunit, RpoD ... 212 1e-52
Q3MBX2_ANAVT (tr|Q3MBX2) Sigma 28 (Flagella/Sporulation) OS=Anab... 212 1e-52
K8GCA2_9CYAN (tr|K8GCA2) RNA polymerase sigma factor, cyanobacte... 212 1e-52
D8G620_9CYAN (tr|D8G620) RNA polymerase sigma factor SigD OS=Osc... 212 1e-52
K9VD31_9CYAN (tr|K9VD31) RNA polymerase, sigma 70 subunit, RpoD ... 212 1e-52
Q9KHE5_NOSS1 (tr|Q9KHE5) RNA polymerase sigma factor OS=Nostoc s... 212 1e-52
Q3MBV9_ANAVT (tr|Q3MBV9) RNA polymerase sigma factor OS=Anabaena... 212 1e-52
K9S928_9CYAN (tr|K9S928) RNA polymerase sigma factor OS=Geitleri... 212 1e-52
I4HQ77_MICAE (tr|I4HQ77) RNA polymerase sigma factor rpoD3 OS=Mi... 212 2e-52
I4FRP5_MICAE (tr|I4FRP5) RNA polymerase sigma factor rpoD3 OS=Mi... 212 2e-52
B2J979_NOSP7 (tr|B2J979) RNA polymerase, sigma 70 subunit, RpoD ... 211 2e-52
K9X3C6_9NOST (tr|K9X3C6) RNA polymerase sigma factor, cyanobacte... 211 2e-52
F5UJI7_9CYAN (tr|F5UJI7) RNA polymerase sigma factor OS=Microcol... 211 3e-52
E0UIU1_CYAP2 (tr|E0UIU1) RNA polymerase, sigma 70 subunit, RpoD ... 211 3e-52
K9Y6K9_HALP7 (tr|K9Y6K9) RNA polymerase sigma factor OS=Halothec... 211 4e-52
Q116K5_TRIEI (tr|Q116K5) RNA polymerase sigma factor OS=Trichode... 211 4e-52
Q8S9C8_CYAPA (tr|Q8S9C8) RNA polymerase sigma factor OS=Cyanopho... 210 4e-52
D4TFM7_9NOST (tr|D4TFM7) SigD (Sigma 28 (Flagella/spoulation)) O... 210 4e-52
G6FRT8_9CYAN (tr|G6FRT8) RNA polymerase, sigma 70 subunit, RpoD ... 210 4e-52
L8L7Y4_9CYAN (tr|L8L7Y4) RNA polymerase sigma factor OS=Leptolyn... 210 5e-52
K9ZFX7_ANACC (tr|K9ZFX7) RNA polymerase, sigma 70 subunit, RpoD ... 210 5e-52
K9RZ35_SYNP3 (tr|K9RZ35) RNA polymerase sigma factor OS=Synechoc... 210 5e-52
K9U2G0_9CYAN (tr|K9U2G0) RNA polymerase, sigma 70 subunit, RpoD ... 210 5e-52
Q9KHE8_NOSS1 (tr|Q9KHE8) Group 2 sigma 70-type sigma factor D OS... 210 6e-52
R7QJX2_CHOCR (tr|R7QJX2) Stackhouse genomic scaffold, scaffold_3... 210 6e-52
K9WNS7_9CYAN (tr|K9WNS7) RNA polymerase sigma factor, cyanobacte... 210 6e-52
K9V798_9CYAN (tr|K9V798) RNA polymerase, sigma 70 subunit, RpoD ... 209 8e-52
B8HR54_CYAP4 (tr|B8HR54) RNA polymerase, sigma 70 subunit, RpoD ... 209 9e-52
F4XU70_9CYAN (tr|F4XU70) RNA polymerase sigma factor OS=Moorea p... 209 9e-52
Q5N3S3_SYNP6 (tr|Q5N3S3) Group2 RNA polymerase sigma factor RpoD... 209 1e-51
K7WX98_9NOST (tr|K7WX98) RpoD family RNA polymerase sigma subuni... 209 1e-51
K9Z739_CYAAP (tr|K9Z739) RNA polymerase, sigma 70 subunit, RpoD ... 209 1e-51
I1ILU6_BRADI (tr|I1ILU6) Uncharacterized protein OS=Brachypodium... 209 1e-51
I4GS23_MICAE (tr|I4GS23) RNA polymerase sigma factor rpoD3 OS=Mi... 209 1e-51
K9RA84_9CYAN (tr|K9RA84) RNA polymerase sigma factor OS=Rivulari... 208 2e-51
H1WGX8_9CYAN (tr|H1WGX8) Group 2 RNA polymerase sigma factor Sig... 208 2e-51
F4Y0Z1_9CYAN (tr|F4Y0Z1) Putative RNA polymerase sigma factor OS... 208 2e-51
I4ISK0_MICAE (tr|I4ISK0) RNA polymerase sigma factor rpoD3 OS=Mi... 208 2e-51
K8GMJ3_9CYAN (tr|K8GMJ3) RNA polymerase sigma factor OS=Oscillat... 208 2e-51
B7KAB6_CYAP7 (tr|B7KAB6) RNA polymerase, sigma 70 subunit, RpoD ... 208 2e-51
A0YTG7_LYNSP (tr|A0YTG7) RNA polymerase sigma factor OS=Lyngbya ... 208 2e-51
K9QHC9_9NOSO (tr|K9QHC9) RNA polymerase sigma factor OS=Nostoc s... 208 2e-51
B8HU39_CYAP4 (tr|B8HU39) RNA polymerase sigma factor OS=Cyanothe... 208 2e-51
Q39515_CYACA (tr|Q39515) Chloroplast RNA polymerase sigma subuni... 207 3e-51
P96034_SYNSP (tr|P96034) Sigma factor OS=Synechococcus sp. GN=si... 207 3e-51
K9XPH8_STAC7 (tr|K9XPH8) RNA polymerase sigma factor OS=Stanieri... 207 3e-51
B0JTP4_MICAN (tr|B0JTP4) Group 2 RNA polymerase sigma factor OS=... 207 3e-51
L8NM63_MICAE (tr|L8NM63) RNA polymerase sigma factor rpoD2 OS=Mi... 207 3e-51
A8YAB5_MICAE (tr|A8YAB5) Genome sequencing data, contig C249 OS=... 207 3e-51
I4H5M1_MICAE (tr|I4H5M1) RNA polymerase sigma factor rpoD3 OS=Mi... 207 3e-51
D2C3Z1_THENR (tr|D2C3Z1) RNA polymerase sigma factor OS=Thermoto... 207 3e-51
K9PG81_9CYAN (tr|K9PG81) RNA polymerase, sigma 70 subunit, RpoD ... 207 3e-51
M0XE64_HORVD (tr|M0XE64) Uncharacterized protein OS=Hordeum vulg... 207 4e-51
D1B614_THEAS (tr|D1B614) RNA polymerase sigma factor OS=Thermana... 207 4e-51
B1LBI9_THESQ (tr|B1LBI9) RNA polymerase sigma factor OS=Thermoto... 207 4e-51
A5IMD4_THEP1 (tr|A5IMD4) RNA polymerase sigma factor OS=Thermoto... 207 4e-51
J9H086_9THEM (tr|J9H086) RNA polymerase sigma factor OS=Thermoto... 207 4e-51
G4FFI6_THEMA (tr|G4FFI6) RNA polymerase sigma factor OS=Thermoto... 207 4e-51
K9VNL0_9CYAN (tr|K9VNL0) RNA polymerase sigma factor OS=Oscillat... 207 4e-51
M0XE63_HORVD (tr|M0XE63) Uncharacterized protein OS=Hordeum vulg... 207 4e-51
I4G0I4_MICAE (tr|I4G0I4) RNA polymerase sigma factor rpoD3 OS=Mi... 207 4e-51
L8L758_9CYAN (tr|L8L758) RNA polymerase sigma factor OS=Leptolyn... 207 4e-51
L7E3E5_MICAE (tr|L7E3E5) RNA polymerase sigma factor OS=Microcys... 207 5e-51
I4GLZ5_MICAE (tr|I4GLZ5) RNA polymerase sigma factor rpoD3 OS=Mi... 207 5e-51
I4FIK9_MICAE (tr|I4FIK9) RNA polymerase sigma factor rpoD3 OS=Mi... 207 5e-51
M8AUB6_AEGTA (tr|M8AUB6) RNA polymerase sigma factor rpoD OS=Aeg... 207 5e-51
L8L7S5_9CYAN (tr|L8L7S5) RNA polymerase sigma factor OS=Leptolyn... 207 5e-51
B9K8D5_THENN (tr|B9K8D5) RNA polymerase sigma factor OS=Thermoto... 207 5e-51
K9X1J5_9NOST (tr|K9X1J5) RNA polymerase sigma factor OS=Cylindro... 207 5e-51
K9ZHT8_ANACC (tr|K9ZHT8) RNA polymerase sigma factor OS=Anabaena... 206 6e-51
K9W3C4_9CYAN (tr|K9W3C4) RNA polymerase sigma factor OS=Crinaliu... 206 7e-51
K9V3Z1_9CYAN (tr|K9V3Z1) RNA polymerase sigma factor OS=Calothri... 206 7e-51
B0C890_ACAM1 (tr|B0C890) RNA polymerase sigma-70 factor OS=Acary... 206 7e-51
K1VW29_SPIPL (tr|K1VW29) RNA polymerase sigma 70 subunit RpoD fa... 206 7e-51
B5VZJ5_SPIMA (tr|B5VZJ5) RNA polymerase, sigma 70 subunit, RpoD ... 206 7e-51
B4VTM7_9CYAN (tr|B4VTM7) RNA polymerase sigma factor, cyanobacte... 206 7e-51
A5JEM2_9STRA (tr|A5JEM2) Chloroplast RNA-polymerase sigma factor... 206 8e-51
K9Q243_9CYAN (tr|K9Q243) RNA polymerase sigma factor OS=Leptolyn... 206 8e-51
K6E178_SPIPL (tr|K6E178) RNA polymerase sigma factor SigD OS=Art... 206 9e-51
R5SI72_9GAMM (tr|R5SI72) RNA polymerase sigma factor OS=Acinetob... 206 1e-50
K4A8A6_SETIT (tr|K4A8A6) Uncharacterized protein OS=Setaria ital... 206 1e-50
K9SD40_9CYAN (tr|K9SD40) RNA polymerase sigma factor OS=Geitleri... 206 1e-50
K9PLW5_9CYAN (tr|K9PLW5) RNA polymerase sigma factor OS=Calothri... 206 1e-50
K9UHM5_9CHRO (tr|K9UHM5) RNA polymerase sigma factor, cyanobacte... 206 1e-50
Q117X0_TRIEI (tr|Q117X0) RNA polymerase sigma factor OS=Trichode... 205 1e-50
K9QQ38_NOSS7 (tr|K9QQ38) RNA polymerase sigma factor OS=Nostoc s... 205 1e-50
A8F8P3_THELT (tr|A8F8P3) RNA polymerase sigma factor OS=Thermoto... 205 2e-50
R7E2W0_9BACT (tr|R7E2W0) RNA polymerase sigma factor OS=Akkerman... 205 2e-50
K7UQN4_MAIZE (tr|K7UQN4) Sigma factor SIG2A OS=Zea mays GN=ZEAMM... 205 2e-50
Q9ZPL2_MAIZE (tr|Q9ZPL2) Sigma factor SIG2A OS=Zea mays GN=sig2A... 205 2e-50
K9R7J2_9CYAN (tr|K9R7J2) RNA polymerase sigma factor OS=Rivulari... 205 2e-50
I4I200_MICAE (tr|I4I200) RNA polymerase sigma factor rpoD3 OS=Mi... 205 2e-50
R5SYW6_9CLOT (tr|R5SYW6) RNA polymerase sigma factor OS=Clostrid... 205 2e-50
G6FXB6_9CYAN (tr|G6FXB6) RNA polymerase sigma factor OS=Fischere... 205 2e-50
D7E0F2_NOSA0 (tr|D7E0F2) RNA polymerase sigma factor OS=Nostoc a... 205 2e-50
I1QZW7_ORYGL (tr|I1QZW7) Uncharacterized protein OS=Oryza glaber... 204 2e-50
B1XKF5_SYNP2 (tr|B1XKF5) RNA polymerase sigma factor OS=Synechoc... 204 2e-50
L8LVR4_9CHRO (tr|L8LVR4) RNA polymerase sigma factor, cyanobacte... 204 2e-50
B9XH89_9BACT (tr|B9XH89) RNA polymerase sigma factor OS=Pedospha... 204 2e-50
B8AUZ3_ORYSI (tr|B8AUZ3) Putative uncharacterized protein OS=Ory... 204 2e-50
Q53JE7_ORYSJ (tr|Q53JE7) Sigma-70 region 3, putative OS=Oryza sa... 204 3e-50
M1WYW2_9NOST (tr|M1WYW2) RNA polymerase sigma factor OS=Richelia... 204 3e-50
Q7XXT0_ORYSJ (tr|Q7XXT0) Plastid sigma factor 2A OS=Oryza sativa... 204 3e-50
Q53KH8_ORYSJ (tr|Q53KH8) Os11g0448400 protein OS=Oryza sativa su... 204 3e-50
J3N844_ORYBR (tr|J3N844) Uncharacterized protein OS=Oryza brachy... 204 3e-50
Q84Q84_ORYSJ (tr|Q84Q84) Os03g0271100 protein OS=Oryza sativa su... 204 3e-50
K9YIA7_CYASC (tr|K9YIA7) RNA polymerase, sigma 70 subunit, RpoD ... 204 3e-50
R5D398_9FIRM (tr|R5D398) RNA polymerase sigma factor OS=Firmicut... 204 3e-50
K2EUZ1_9BACT (tr|K2EUZ1) RNA polymerase sigma factor OS=uncultur... 204 3e-50
D4TGH9_9NOST (tr|D4TGH9) RNA polymerase sigma factor OS=Cylindro... 204 3e-50
A3AGH1_ORYSJ (tr|A3AGH1) Putative uncharacterized protein OS=Ory... 204 3e-50
M6HXY5_9LEPT (tr|M6HXY5) RNA polymerase sigma factor RpoD OS=Lep... 204 3e-50
M6UKV4_9LEPT (tr|M6UKV4) RNA polymerase sigma factor RpoD OS=Lep... 204 3e-50
M6CT15_9LEPT (tr|M6CT15) RNA polymerase sigma factor RpoD OS=Lep... 204 3e-50
K8KZW0_9LEPT (tr|K8KZW0) RNA polymerase sigma factor OS=Leptospi... 204 3e-50
D4TSS7_9NOST (tr|D4TSS7) RNA polymerase sigma factor OS=Raphidio... 204 3e-50
Q051D5_LEPBL (tr|Q051D5) RNA polymerase sigma factor OS=Leptospi... 204 3e-50
Q04T13_LEPBJ (tr|Q04T13) RNA polymerase sigma factor OS=Leptospi... 204 3e-50
M6XKD7_9LEPT (tr|M6XKD7) RNA polymerase sigma factor RpoD OS=Lep... 204 3e-50
M6WWN1_9LEPT (tr|M6WWN1) RNA polymerase sigma factor RpoD OS=Lep... 204 3e-50
M6JUS0_9LEPT (tr|M6JUS0) RNA polymerase sigma factor RpoD OS=Lep... 204 3e-50
M6IMY5_9LEPT (tr|M6IMY5) RNA polymerase sigma factor RpoD OS=Lep... 204 3e-50
M6FF31_9LEPT (tr|M6FF31) RNA polymerase sigma factor RpoD OS=Lep... 204 3e-50
M6EI47_9LEPT (tr|M6EI47) RNA polymerase sigma factor RpoD OS=Lep... 204 3e-50
M6E8R7_9LEPT (tr|M6E8R7) RNA polymerase sigma factor RpoD OS=Lep... 204 3e-50
M6DES8_9LEPT (tr|M6DES8) RNA polymerase sigma factor RpoD OS=Lep... 204 3e-50
M6C1C5_9LEPT (tr|M6C1C5) RNA polymerase sigma factor RpoD OS=Lep... 204 3e-50
M5ZRC4_LEPIR (tr|M5ZRC4) RNA polymerase sigma factor RpoD OS=Lep... 204 3e-50
M5V708_LEPIR (tr|M5V708) RNA polymerase sigma factor RpoD OS=Lep... 204 3e-50
M3EH80_LEPIR (tr|M3EH80) RNA polymerase sigma factor OS=Leptospi... 204 3e-50
K8IHI3_9LEPT (tr|K8IHI3) RNA polymerase sigma factor OS=Leptospi... 204 3e-50
K8H6V8_9LEPT (tr|K8H6V8) RNA polymerase sigma factor OS=Leptospi... 204 3e-50
K6JEX4_9LEPT (tr|K6JEX4) RNA polymerase sigma factor OS=Leptospi... 204 3e-50
K6HHP2_9LEPT (tr|K6HHP2) RNA polymerase sigma factor OS=Leptospi... 204 3e-50
K6HBM9_9LEPT (tr|K6HBM9) RNA polymerase sigma factor OS=Leptospi... 204 3e-50
J5DV71_LEPIR (tr|J5DV71) RNA polymerase sigma factor OS=Leptospi... 204 3e-50
J4T0P9_9LEPT (tr|J4T0P9) RNA polymerase sigma factor OS=Leptospi... 204 3e-50
M6YAN3_9LEPT (tr|M6YAN3) RNA polymerase sigma factor RpoD OS=Lep... 204 3e-50
M5VGA7_9LEPT (tr|M5VGA7) RNA polymerase sigma factor RpoD OS=Lep... 204 3e-50
G7QLF6_LEPII (tr|G7QLF6) RNA polymerase sigma factor OS=Leptospi... 204 3e-50
N6XKN4_LEPIR (tr|N6XKN4) RNA polymerase sigma factor RpoD OS=Lep... 204 3e-50
N6WFD0_LEPBO (tr|N6WFD0) RNA polymerase sigma factor RpoD OS=Lep... 204 3e-50
N1VQ39_LEPIT (tr|N1VQ39) RNA polymerase sigma factor RpoD OS=Lep... 204 3e-50
N1TNK3_LEPIR (tr|N1TNK3) RNA polymerase sigma factor RpoD OS=Lep... 204 3e-50
M7A3F1_LEPIR (tr|M7A3F1) RNA polymerase sigma factor RpoD OS=Lep... 204 3e-50
M6YIS9_LEPIR (tr|M6YIS9) RNA polymerase sigma factor RpoD OS=Lep... 204 3e-50
M6TWM3_LEPIR (tr|M6TWM3) RNA polymerase sigma factor RpoD OS=Lep... 204 3e-50
M6SNB3_LEPIT (tr|M6SNB3) RNA polymerase sigma factor RpoD OS=Lep... 204 3e-50
M6RUQ6_LEPBO (tr|M6RUQ6) RNA polymerase sigma factor RpoD OS=Lep... 204 3e-50
M6QTI5_LEPIR (tr|M6QTI5) RNA polymerase sigma factor RpoD OS=Lep... 204 3e-50
M6QP00_LEPIR (tr|M6QP00) RNA polymerase sigma factor RpoD OS=Lep... 204 3e-50
M6PUF5_LEPIR (tr|M6PUF5) RNA polymerase sigma factor RpoD OS=Lep... 204 3e-50
M6PM28_LEPIR (tr|M6PM28) RNA polymerase sigma factor RpoD OS=Lep... 204 3e-50
M6PEU2_LEPIR (tr|M6PEU2) RNA polymerase sigma factor RpoD OS=Lep... 204 3e-50
M6NTU3_LEPIR (tr|M6NTU3) RNA polymerase sigma factor RpoD OS=Lep... 204 3e-50
M6NJ65_LEPIR (tr|M6NJ65) RNA polymerase sigma factor RpoD OS=Lep... 204 3e-50
M6MX54_LEPIR (tr|M6MX54) RNA polymerase sigma factor RpoD OS=Lep... 204 3e-50
M6M5U5_LEPIR (tr|M6M5U5) RNA polymerase sigma factor RpoD OS=Lep... 204 3e-50
M6M5R7_LEPIR (tr|M6M5R7) RNA polymerase sigma factor RpoD OS=Lep... 204 3e-50
M6L7Z7_LEPIR (tr|M6L7Z7) RNA polymerase sigma factor RpoD OS=Lep... 204 3e-50
M6KUA7_LEPIR (tr|M6KUA7) RNA polymerase sigma factor RpoD OS=Lep... 204 3e-50
M6KLK7_LEPIR (tr|M6KLK7) RNA polymerase sigma factor RpoD OS=Lep... 204 3e-50
M6ILH4_LEPIR (tr|M6ILH4) RNA polymerase sigma factor RpoD OS=Lep... 204 3e-50
M6HH29_LEPIR (tr|M6HH29) RNA polymerase sigma factor RpoD OS=Lep... 204 3e-50
M6H3K6_LEPIR (tr|M6H3K6) RNA polymerase sigma factor RpoD OS=Lep... 204 3e-50
M6GAE2_LEPIR (tr|M6GAE2) RNA polymerase sigma factor RpoD OS=Lep... 204 3e-50
M6F1A8_LEPIR (tr|M6F1A8) RNA polymerase sigma factor RpoD OS=Lep... 204 3e-50
M6ESP8_9LEPT (tr|M6ESP8) RNA polymerase sigma factor RpoD OS=Lep... 204 3e-50
M6BZ90_LEPIR (tr|M6BZ90) RNA polymerase sigma factor RpoD OS=Lep... 204 3e-50
M6B2Z5_LEPIR (tr|M6B2Z5) RNA polymerase sigma factor RpoD OS=Lep... 204 3e-50
M6AYG3_LEPIR (tr|M6AYG3) RNA polymerase sigma factor RpoD OS=Lep... 204 3e-50
M6A0J1_9LEPT (tr|M6A0J1) RNA polymerase sigma factor RpoD OS=Lep... 204 3e-50
M5YVB0_LEPIR (tr|M5YVB0) RNA polymerase sigma factor RpoD OS=Lep... 204 3e-50
M5Y6L1_LEPIR (tr|M5Y6L1) RNA polymerase sigma factor RpoD OS=Lep... 204 3e-50
M3HLB9_LEPBO (tr|M3HLB9) RNA polymerase sigma factor OS=Leptospi... 204 3e-50
M3FNF8_LEPIR (tr|M3FNF8) RNA polymerase sigma factor OS=Leptospi... 204 3e-50
M3F190_LEPIR (tr|M3F190) RNA polymerase sigma factor OS=Leptospi... 204 3e-50
K8KXS4_LEPIR (tr|K8KXS4) RNA polymerase sigma factor OS=Leptospi... 204 3e-50
K8K1Q6_LEPIR (tr|K8K1Q6) RNA polymerase sigma factor OS=Leptospi... 204 3e-50
K8JLG0_LEPIR (tr|K8JLG0) RNA polymerase sigma factor OS=Leptospi... 204 3e-50
K8JK13_LEPIR (tr|K8JK13) RNA polymerase sigma factor OS=Leptospi... 204 3e-50
K8IV92_LEPIR (tr|K8IV92) RNA polymerase sigma factor OS=Leptospi... 204 3e-50
K8IMH5_LEPIR (tr|K8IMH5) RNA polymerase sigma factor OS=Leptospi... 204 3e-50
K8HRF5_LEPBO (tr|K8HRF5) RNA polymerase sigma factor OS=Leptospi... 204 3e-50
K8HRD4_LEPBO (tr|K8HRD4) RNA polymerase sigma factor OS=Leptospi... 204 3e-50
K6TFZ1_LEPIR (tr|K6TFZ1) RNA polymerase sigma factor OS=Leptospi... 204 3e-50
K6SS24_LEPIR (tr|K6SS24) RNA polymerase sigma factor OS=Leptospi... 204 3e-50
K6PQ25_LEPIR (tr|K6PQ25) RNA polymerase sigma factor OS=Leptospi... 204 3e-50
K6P7E2_9LEPT (tr|K6P7E2) RNA polymerase sigma factor OS=Leptospi... 204 3e-50
K6JY00_LEPBO (tr|K6JY00) RNA polymerase sigma factor OS=Leptospi... 204 3e-50
K6IVV6_LEPIR (tr|K6IVV6) RNA polymerase sigma factor OS=Leptospi... 204 3e-50
K6IVH2_LEPIR (tr|K6IVH2) RNA polymerase sigma factor OS=Leptospi... 204 3e-50
K6GT66_LEPIR (tr|K6GT66) RNA polymerase sigma factor OS=Leptospi... 204 3e-50
K6FU93_LEPIR (tr|K6FU93) RNA polymerase sigma factor OS=Leptospi... 204 3e-50
K6FGV5_LEPIR (tr|K6FGV5) RNA polymerase sigma factor OS=Leptospi... 204 3e-50
K6DR38_LEPIR (tr|K6DR38) RNA polymerase sigma factor OS=Leptospi... 204 3e-50
K6D7G5_LEPIR (tr|K6D7G5) RNA polymerase sigma factor OS=Leptospi... 204 3e-50
J7UFM5_LEPIR (tr|J7UFM5) RNA polymerase sigma factor OS=Leptospi... 204 3e-50
R6JDR2_9BACT (tr|R6JDR2) RNA polymerase sigma factor OS=Akkerman... 204 3e-50
J7SS22_LEPIR (tr|J7SS22) RNA polymerase sigma factor OS=Leptospi... 204 3e-50
I0JXE6_9BACT (tr|I0JXE6) RNA polymerase sigma factor OS=Methylac... 204 3e-50
M6VK00_LEPIR (tr|M6VK00) RNA polymerase sigma factor RpoD OS=Lep... 204 3e-50
>I3SER7_LOTJA (tr|I3SER7) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
Length = 311
Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/311 (100%), Positives = 311/311 (100%)
Query: 1 MFLWGPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYA 60
MFLWGPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYA
Sbjct: 1 MFLWGPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYA 60
Query: 61 LQTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAG 120
LQTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAG
Sbjct: 61 LQTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAG 120
Query: 121 CRFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELA 180
CRFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELA
Sbjct: 121 CRFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELA 180
Query: 181 RKIGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHA 240
RKIGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHA
Sbjct: 181 RKIGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHA 240
Query: 241 RNLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLAS 300
RNLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLAS
Sbjct: 241 RNLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLAS 300
Query: 301 HGLDAYANLLV 311
HGLDAYANLLV
Sbjct: 301 HGLDAYANLLV 311
>G7L3V2_MEDTR (tr|G7L3V2) RNA polymerase sigma factor rpoD OS=Medicago truncatula
GN=MTR_7g101840 PE=4 SV=1
Length = 557
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 229/311 (73%), Positives = 273/311 (87%)
Query: 1 MFLWGPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYA 60
+FLW PETK+LL+ EEESQLI+QIQ+LF+L+E KI+LQS FGREPT+AEWADGVGLSC
Sbjct: 247 LFLWSPETKQLLSIEEESQLIAQIQDLFKLKETKIKLQSHFGREPTLAEWADGVGLSCRD 306
Query: 61 LQTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAG 120
LQ +L G RSK+KLIHANLR+VVH+AK Y GRGLS QDLLQEGSMGLM+SVEKFKPQAG
Sbjct: 307 LQKRLHCGNRSKDKLIHANLRLVVHIAKYYQGRGLSLQDLLQEGSMGLMRSVEKFKPQAG 366
Query: 121 CRFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELA 180
CRF++YAYWWIRQTIRRALFLHS+TIRLPEN Y LLGK+ EAKK Y +EGN+HPTKEE+A
Sbjct: 367 CRFSTYAYWWIRQTIRRALFLHSKTIRLPENFYALLGKIAEAKKSYIKEGNLHPTKEEIA 426
Query: 181 RKIGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHA 240
+++G+TVD+LE+LL + R PLSM++ VW D DTT+QEITAD++IE P+V VAKQLMR H
Sbjct: 427 KRVGITVDRLEMLLFSTRTPLSMERAVWADSDTTFQEITADSSIEIPNVCVAKQLMRSHV 486
Query: 241 RNLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLAS 300
RNLL L P+ER+++RLRFGIEDGYEKSL+EIG V G+ KERVRQLES+AL+KLKQCL S
Sbjct: 487 RNLLGILPPKERKVLRLRFGIEDGYEKSLTEIGKVLGVCKERVRQLESQALNKLKQCLVS 546
Query: 301 HGLDAYANLLV 311
LDAY +L+V
Sbjct: 547 QQLDAYVDLIV 557
>I1NAA3_SOYBN (tr|I1NAA3) Uncharacterized protein OS=Glycine max PE=4 SV=1
Length = 554
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 233/311 (74%), Positives = 273/311 (87%)
Query: 1 MFLWGPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYA 60
+FL GPE+++LLT EEESQLI+Q+Q+L RLEEVKIRLQ+Q REPT+AEWAD VG SCYA
Sbjct: 244 LFLSGPESRQLLTREEESQLITQLQDLSRLEEVKIRLQTQLRREPTLAEWADAVGHSCYA 303
Query: 61 LQTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAG 120
LQTQL RSKEKL HANLRMVVH+AK+Y GRGLS QDL QEGS GLMKS+EKFKP+AG
Sbjct: 304 LQTQLHCANRSKEKLFHANLRMVVHIAKHYQGRGLSLQDLFQEGSTGLMKSIEKFKPEAG 363
Query: 121 CRFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELA 180
CRF +YAYWWIR +R+A+FLHSRTIRLPEN+YTLLGK+IEAKK Y +EGN+HPTKEELA
Sbjct: 364 CRFGTYAYWWIRHAVRKAIFLHSRTIRLPENLYTLLGKVIEAKKSYIQEGNLHPTKEELA 423
Query: 181 RKIGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHA 240
RK+G+T++K++ LL A+R P+SMQQTVW DQDTT+QEITAD+AIE PDV V+KQLMR H
Sbjct: 424 RKVGITIEKMDNLLFASRNPISMQQTVWADQDTTFQEITADSAIEIPDVTVSKQLMRMHV 483
Query: 241 RNLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLAS 300
NLL+ L+P+ER IIRLRFGIEDG EK+LS+IG VFGL+KERVRQLESRAL KL+QCL S
Sbjct: 484 HNLLNILSPKERGIIRLRFGIEDGEEKTLSDIGKVFGLTKERVRQLESRALLKLRQCLES 543
Query: 301 HGLDAYANLLV 311
GLDAY +LLV
Sbjct: 544 QGLDAYTDLLV 554
>I1JPP1_SOYBN (tr|I1JPP1) Uncharacterized protein OS=Glycine max PE=4 SV=1
Length = 554
Score = 492 bits (1266), Expect = e-137, Method: Compositional matrix adjust.
Identities = 232/311 (74%), Positives = 270/311 (86%)
Query: 1 MFLWGPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYA 60
+FL GPE+++LLT EEES LI+Q+Q+L R EEVKIRLQSQ REPT+AEWAD VGLSCY
Sbjct: 244 LFLSGPESRQLLTREEESLLITQLQDLSRFEEVKIRLQSQLRREPTLAEWADAVGLSCYT 303
Query: 61 LQTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAG 120
LQTQL RSKEKL HANLRMVVH+AK+Y GRGLS QDL QEGS GLMKS++KFKP+AG
Sbjct: 304 LQTQLHCANRSKEKLFHANLRMVVHIAKHYQGRGLSLQDLFQEGSTGLMKSIQKFKPEAG 363
Query: 121 CRFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELA 180
CRF +YAYWWIR IR+A+FLHSRTIRLPEN+YTLLGKLIEAKK Y +EGN+HPTKEELA
Sbjct: 364 CRFGTYAYWWIRHAIRKAIFLHSRTIRLPENLYTLLGKLIEAKKSYIQEGNLHPTKEELA 423
Query: 181 RKIGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHA 240
R++G+TV+KL+ LL A+R P+SMQQT+W DQDTT+QEITAD+AIE P V V+KQLMRRH
Sbjct: 424 RRVGITVEKLDNLLFASRNPISMQQTLWVDQDTTFQEITADSAIEIPGVTVSKQLMRRHV 483
Query: 241 RNLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLAS 300
NLL+ L+P+E+ IIRLRFGIEDG EK+LS+IG VFGL+KERVRQLE RAL KLKQCL S
Sbjct: 484 HNLLNILSPKEKGIIRLRFGIEDGKEKTLSDIGKVFGLTKERVRQLECRALSKLKQCLES 543
Query: 301 HGLDAYANLLV 311
GLDAY +LLV
Sbjct: 544 QGLDAYIDLLV 554
>I1L8Z5_SOYBN (tr|I1L8Z5) Uncharacterized protein OS=Glycine max PE=4 SV=1
Length = 575
Score = 486 bits (1251), Expect = e-135, Method: Compositional matrix adjust.
Identities = 230/311 (73%), Positives = 267/311 (85%)
Query: 1 MFLWGPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYA 60
+FLWGPETK+LLT E+ESQLISQIQ+L RLEEVK LQSQFGREPTMAEWA+G GL+C
Sbjct: 265 LFLWGPETKQLLTLEQESQLISQIQDLLRLEEVKTNLQSQFGREPTMAEWAEGAGLNCRL 324
Query: 61 LQTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAG 120
LQ+QL SG RS+EKLI ANLRMVVHVAK+Y GRGLS QDLLQEGSMGLMKSVEKF P AG
Sbjct: 325 LQSQLHSGNRSREKLIQANLRMVVHVAKSYQGRGLSLQDLLQEGSMGLMKSVEKFNPLAG 384
Query: 121 CRFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELA 180
RF +YA+WWIRQ IR+A+F HSRTIRLPE V+ LLGK++EAKK Y +EGN+HPTKEELA
Sbjct: 385 SRFGNYAFWWIRQAIRKAVFRHSRTIRLPEKVFILLGKVMEAKKLYIQEGNLHPTKEELA 444
Query: 181 RKIGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHA 240
R++GVTV+K++ LL +ARIP+SMQQTVW DQ+TT+QEITAD +E DV V KQLMRRH
Sbjct: 445 RRVGVTVEKIDKLLFSARIPISMQQTVWADQNTTFQEITADPTVEATDVTVEKQLMRRHV 504
Query: 241 RNLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLAS 300
N+L L+P+ERRIIRLR+G EDG +KSLSEIG +FGLSKERVRQLE RAL KLK+CL
Sbjct: 505 LNVLSVLHPKERRIIRLRYGFEDGEQKSLSEIGDIFGLSKERVRQLEIRALYKLKKCLVK 564
Query: 301 HGLDAYANLLV 311
GLDAY +LL+
Sbjct: 565 QGLDAYVDLLL 575
>M5WAB7_PRUPE (tr|M5WAB7) Uncharacterized protein OS=Prunus persica
GN=PRUPE_ppa003513mg PE=4 SV=1
Length = 568
Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust.
Identities = 226/311 (72%), Positives = 271/311 (87%)
Query: 1 MFLWGPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYA 60
+FLWGPET++LLT +EE++LI+++Q+LF+LEEVK RLQ+QFGREPT+ EWA+ VG+SC
Sbjct: 258 LFLWGPETRQLLTAKEEAELIARVQDLFKLEEVKSRLQTQFGREPTLIEWAEAVGISCQI 317
Query: 61 LQTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAG 120
L++QLRSGT S+EKLI+ANLRMVVH+AK Y GRGL QDL+QEGSMGLMKSVEKFKPQAG
Sbjct: 318 LKSQLRSGTSSREKLIYANLRMVVHIAKQYQGRGLGLQDLMQEGSMGLMKSVEKFKPQAG 377
Query: 121 CRFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELA 180
CRFA+YAYWWIRQT+R+A+F HSRTIRLPENVY+LLGK++EAKK +EGN +P KEELA
Sbjct: 378 CRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYSLLGKVLEAKKSCIQEGNHNPNKEELA 437
Query: 181 RKIGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHA 240
R++G+TV+KLE LL A R+PLSMQQ VW DQDTT+QE+TADT +E PDV VAKQLMR+H
Sbjct: 438 RRVGITVEKLEKLLYATRMPLSMQQPVWADQDTTFQEVTADTGVEIPDVSVAKQLMRQHV 497
Query: 241 RNLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLAS 300
R+LL LN RER IIRLR+GIEDG ++SLSEIG +FGLSKERVRQLESRA KL+Q L S
Sbjct: 498 RHLLSILNLREREIIRLRYGIEDGKQRSLSEIGGMFGLSKERVRQLESRAFLKLRQSLGS 557
Query: 301 HGLDAYANLLV 311
GL AY LLV
Sbjct: 558 QGLGAYGPLLV 568
>D7TQP0_VITVI (tr|D7TQP0) Putative uncharacterized protein OS=Vitis vinifera
GN=VIT_08s0040g01560 PE=4 SV=1
Length = 561
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 224/311 (72%), Positives = 264/311 (84%)
Query: 1 MFLWGPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYA 60
+FLWGPET+KLLT +EES+LI QIQ L RLEEVK RLQS REPT+ EWA+ VGLSC
Sbjct: 251 LFLWGPETRKLLTAKEESELIVQIQELMRLEEVKKRLQSHLKREPTVVEWAEAVGLSCQV 310
Query: 61 LQTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAG 120
LQ+QL SG RS++KLI+ANLRMVVH+AK Y GRGL+ QDLLQEGSMGLM SVEKFKP AG
Sbjct: 311 LQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMNSVEKFKPNAG 370
Query: 121 CRFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELA 180
CRFASYAYWWIRQ +R+A+F HSRTIRLPEN+Y+LLGK+ EAK+ + +EG+ PTKEE+A
Sbjct: 371 CRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYSLLGKVKEAKRLFIQEGHHDPTKEEIA 430
Query: 181 RKIGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHA 240
++G+T++KL+ LL R+PLSMQQ VW DQDTT+QE+TADT IE PDV VAKQLMR+H
Sbjct: 431 ERVGITIEKLQRLLLHTRMPLSMQQPVWADQDTTFQEVTADTGIEIPDVSVAKQLMRQHV 490
Query: 241 RNLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLAS 300
RNLLH L P+ERRIIRLRFGI DG ++LSEIG VFG SKERVRQLE RAL KLKQCL+S
Sbjct: 491 RNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLVFGFSKERVRQLEQRALHKLKQCLSS 550
Query: 301 HGLDAYANLLV 311
HGL++Y +LLV
Sbjct: 551 HGLESYTDLLV 561
>B9MTE1_POPTR (tr|B9MTE1) Predicted protein OS=Populus trichocarpa
GN=POPTRDRAFT_809851 PE=4 SV=1
Length = 535
Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust.
Identities = 228/310 (73%), Positives = 267/310 (86%)
Query: 1 MFLWGPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYA 60
+FLWGPETK+LLT +EE +LI+QIQ+L LE VK RL+SQFGREPT+ EWA VGLSC+
Sbjct: 225 LFLWGPETKQLLTAKEEFELIAQIQDLMNLEGVKNRLESQFGREPTLVEWAQAVGLSCHV 284
Query: 61 LQTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAG 120
L+ QL SG RS+EKLI+ANLRMVVH+AK Y RGL QDLLQEG++GLMKS+EKFKPQAG
Sbjct: 285 LKLQLHSGNRSREKLINANLRMVVHIAKRYQNRGLGLQDLLQEGTVGLMKSIEKFKPQAG 344
Query: 121 CRFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELA 180
CRFA+YAYWWIRQTI +A+F HSRTIRLPENVY LLGK++EAK+ Y +EGN PT EE+A
Sbjct: 345 CRFATYAYWWIRQTITKAIFQHSRTIRLPENVYGLLGKVMEAKRSYIQEGNHQPTAEEIA 404
Query: 181 RKIGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHA 240
R++G+ +DKLE LL R PLSMQQTVW+DQ+TT+QEITADT IE PD+ VAKQLMR+H
Sbjct: 405 RRVGIAIDKLEKLLCFTRTPLSMQQTVWSDQNTTFQEITADTEIEIPDMSVAKQLMRKHI 464
Query: 241 RNLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLAS 300
R LL+ L+ +ERRIIRLRFGIEDG +KSLSEIG VFGLSKERVRQLESRAL KLKQC+ S
Sbjct: 465 RGLLNILSLKERRIIRLRFGIEDGKQKSLSEIGNVFGLSKERVRQLESRALYKLKQCVGS 524
Query: 301 HGLDAYANLL 310
HGLDAYA+LL
Sbjct: 525 HGLDAYADLL 534
>B9S0J0_RICCO (tr|B9S0J0) RNA polymerase sigma factor rpoD, putative OS=Ricinus
communis GN=RCOM_1355260 PE=4 SV=1
Length = 548
Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust.
Identities = 227/311 (72%), Positives = 269/311 (86%)
Query: 1 MFLWGPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYA 60
+FLWGPETK+LLT +EES+LI Q+Q+L LE VK + + QFGR+PT+ EWAD VGLS
Sbjct: 238 LFLWGPETKQLLTAKEESELIGQVQDLMSLENVKEKFKLQFGRDPTLVEWADAVGLSYSV 297
Query: 61 LQTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAG 120
+Q+QL SG RS+EKLI+ANLRMVVH+AK Y GRGLS QDLLQEGSMGLMKS+EKFKPQ G
Sbjct: 298 MQSQLHSGNRSREKLINANLRMVVHIAKQYQGRGLSLQDLLQEGSMGLMKSIEKFKPQVG 357
Query: 121 CRFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELA 180
CRFA+YAYWWIRQT+R+A+F HSRTIRLPENVY LGK+ EAK+ Y EGN +PTKEELA
Sbjct: 358 CRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYHTLGKVSEAKRSYIMEGNHNPTKEELA 417
Query: 181 RKIGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHA 240
++IG+T +LE LL AR+PLSMQQTVW DQ+TT+QEITAD +E P++ VAKQLMR+H
Sbjct: 418 KRIGITTVRLERLLYMARMPLSMQQTVWADQETTFQEITADIEVEIPELCVAKQLMRKHV 477
Query: 241 RNLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLAS 300
+LL+ LNPRER+IIRLR+GIEDG +KSLSEIG+VFGLSKERVRQLESRAL KLKQCLAS
Sbjct: 478 LSLLNILNPRERKIIRLRYGIEDGKKKSLSEIGSVFGLSKERVRQLESRALYKLKQCLAS 537
Query: 301 HGLDAYANLLV 311
HGL+AYA+LLV
Sbjct: 538 HGLEAYADLLV 548
>I1LZ84_SOYBN (tr|I1LZ84) Uncharacterized protein OS=Glycine max PE=4 SV=2
Length = 574
Score = 479 bits (1234), Expect = e-133, Method: Compositional matrix adjust.
Identities = 228/310 (73%), Positives = 266/310 (85%)
Query: 2 FLWGPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYAL 61
FL GPETK+LLT E+ESQLISQIQ+L RLEEVK +LQSQFGREPTMAEWA+GVGL+C L
Sbjct: 265 FLRGPETKQLLTLEQESQLISQIQDLLRLEEVKTKLQSQFGREPTMAEWAEGVGLNCRML 324
Query: 62 QTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGC 121
QLRSG+RS+EKLI ANLRMVVHVAK+Y GRGLS QDLLQEGSMGLMKSVEKF P G
Sbjct: 325 HAQLRSGSRSREKLIQANLRMVVHVAKSYQGRGLSLQDLLQEGSMGLMKSVEKFNPLVGS 384
Query: 122 RFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELAR 181
RF +YA+WWIRQ IR+A+F HSRTIRLPE V+ LLGK++EAKK Y +EGN+HPTKEELAR
Sbjct: 385 RFGNYAFWWIRQAIRKAVFRHSRTIRLPEKVFILLGKVMEAKKLYIQEGNLHPTKEELAR 444
Query: 182 KIGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHAR 241
++GVTV+K++ LL +ARIP+SMQQTVW DQ+TT+QEITAD +E DV V KQLMR+H
Sbjct: 445 RVGVTVEKIDKLLFSARIPISMQQTVWADQNTTFQEITADPTVEATDVSVEKQLMRQHVL 504
Query: 242 NLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASH 301
N+L L+P+ERRIIRLR+G EDG +KSLSEIG +FGLSKERVRQLE RAL KLK+CL
Sbjct: 505 NVLSILHPKERRIIRLRYGFEDGEQKSLSEIGDIFGLSKERVRQLEIRALYKLKKCLVKQ 564
Query: 302 GLDAYANLLV 311
GLDAY +LL+
Sbjct: 565 GLDAYVDLLL 574
>G7IA88_MEDTR (tr|G7IA88) RNA polymerase sigma factor OS=Medicago truncatula
GN=MTR_1g063850 PE=4 SV=1
Length = 567
Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust.
Identities = 212/310 (68%), Positives = 260/310 (83%)
Query: 2 FLWGPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYAL 61
FL PE+K+LLT E+ESQL+ QIQ L RLE++K LQSQFGREPTMAEWA+G GL+C +
Sbjct: 258 FLQSPESKQLLTSEQESQLVVQIQELLRLEDLKTSLQSQFGREPTMAEWAEGAGLNCRKM 317
Query: 62 QTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGC 121
+ QLR G RS+EKLI ANLR+V ++AK+Y GRGLS +DLLQEGS GL+KS++KFK QAGC
Sbjct: 318 KAQLRCGNRSREKLIQANLRLVHYIAKSYQGRGLSIEDLLQEGSTGLIKSIKKFKTQAGC 377
Query: 122 RFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELAR 181
RFASYAYWWI+Q IR+A++ HSRTIRLPE VY L K++EAKK Y EGN++PTKEELAR
Sbjct: 378 RFASYAYWWIKQAIRKAIYNHSRTIRLPEKVYNKLSKVLEAKKLYKEEGNLNPTKEELAR 437
Query: 182 KIGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHAR 241
++G++ DK++ LL ARIP+SMQ TV ++ DTT+QEITAD AIE+P++ VAKQLMRRH
Sbjct: 438 RVGISPDKVDRLLFVARIPISMQNTVGSETDTTFQEITADCAIESPNMSVAKQLMRRHVL 497
Query: 242 NLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASH 301
N+L+ L P+ERRIIRLRFG EDG EKSLSEIG +FGLS+ERVRQLESRAL KLK+ L
Sbjct: 498 NVLNILRPKERRIIRLRFGFEDGEEKSLSEIGEIFGLSRERVRQLESRALYKLKKYLVGQ 557
Query: 302 GLDAYANLLV 311
GLDAYA+LL+
Sbjct: 558 GLDAYADLLI 567
>K4CQJ3_SOLLC (tr|K4CQJ3) Uncharacterized protein OS=Solanum lycopersicum
GN=Solyc09g008040.2 PE=4 SV=1
Length = 563
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 214/310 (69%), Positives = 259/310 (83%)
Query: 1 MFLWGPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYA 60
MFLWGPETK+LLT +EES+LI +IQ +L+EVK +LQ QF REPT EWA+ G++
Sbjct: 253 MFLWGPETKQLLTAKEESELIVKIQISMKLQEVKHQLQIQFAREPTSLEWAEAAGITSRE 312
Query: 61 LQTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAG 120
L++QL SG S+EKLI+ANLRMVVH+AK Y GRGL+ QDLLQEGSMGLMKSVEKFKPQAG
Sbjct: 313 LKSQLLSGKSSREKLINANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMKSVEKFKPQAG 372
Query: 121 CRFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELA 180
CRF +YAYWWIRQ++R+A+F HSRTIRLPENVY LL K+ +AK+ R+GN HPTKE++A
Sbjct: 373 CRFPTYAYWWIRQSVRKAIFQHSRTIRLPENVYALLSKVKDAKRECIRQGNRHPTKEDIA 432
Query: 181 RKIGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHA 240
G++V++L+ LLS R PLSMQQ+VW+DQDTT+QEITAD AIE P++ V+KQLMRRH
Sbjct: 433 SCAGMSVERLQNLLSNVRTPLSMQQSVWSDQDTTFQEITADNAIEAPELSVSKQLMRRHI 492
Query: 241 RNLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLAS 300
R LL+ L+P+ER+IIRLRFGI DG KSLSEIG VFGLSKERVRQLE+RAL KLKQ L
Sbjct: 493 RGLLNVLSPKERKIIRLRFGIGDGKPKSLSEIGAVFGLSKERVRQLETRALYKLKQNLNK 552
Query: 301 HGLDAYANLL 310
HGLDAY++LL
Sbjct: 553 HGLDAYSDLL 562
>M1BY22_SOLTU (tr|M1BY22) Uncharacterized protein OS=Solanum tuberosum
GN=PGSC0003DMG400021553 PE=4 SV=1
Length = 562
Score = 445 bits (1145), Expect = e-123, Method: Compositional matrix adjust.
Identities = 213/310 (68%), Positives = 259/310 (83%)
Query: 1 MFLWGPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYA 60
MFLWGPETK+LLT +EES+LI +IQ +L+EVK +LQ QF EPT EWA+ G++
Sbjct: 252 MFLWGPETKQLLTAKEESELIVKIQISMKLQEVKHQLQIQFAHEPTSVEWAEAAGITSRE 311
Query: 61 LQTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAG 120
L++QL SG S+EKLI+ANLRMVVH+AK Y GRGL+ QDLLQEGSMGLMKSVEKFKPQAG
Sbjct: 312 LKSQLLSGKSSREKLINANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMKSVEKFKPQAG 371
Query: 121 CRFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELA 180
CRF +YAYWWIRQ++R+A+F HSRTIRLPENVY LL K+ +AKK ++GN +PTKE++A
Sbjct: 372 CRFPTYAYWWIRQSVRKAIFQHSRTIRLPENVYALLSKVKDAKKECIQQGNRYPTKEDIA 431
Query: 181 RKIGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHA 240
G++V++L+ LLS R PLSMQQ+VW+DQDTT+QEITAD AIE P++ V+KQLMRRH
Sbjct: 432 SCAGMSVERLQNLLSNVRTPLSMQQSVWSDQDTTFQEITADNAIEAPELSVSKQLMRRHI 491
Query: 241 RNLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLAS 300
R LL+ L+P+ER+IIRLRFGI DG KSLSEIGTVFGLSKERVRQLE+RAL KLKQ L
Sbjct: 492 RGLLNVLSPKERKIIRLRFGIGDGKPKSLSEIGTVFGLSKERVRQLETRALYKLKQNLNK 551
Query: 301 HGLDAYANLL 310
HGLDAY++LL
Sbjct: 552 HGLDAYSDLL 561
>M1BY21_SOLTU (tr|M1BY21) Uncharacterized protein OS=Solanum tuberosum
GN=PGSC0003DMG400021553 PE=4 SV=1
Length = 311
Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust.
Identities = 213/310 (68%), Positives = 259/310 (83%)
Query: 1 MFLWGPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYA 60
MFLWGPETK+LLT +EES+LI +IQ +L+EVK +LQ QF EPT EWA+ G++
Sbjct: 1 MFLWGPETKQLLTAKEESELIVKIQISMKLQEVKHQLQIQFAHEPTSVEWAEAAGITSRE 60
Query: 61 LQTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAG 120
L++QL SG S+EKLI+ANLRMVVH+AK Y GRGL+ QDLLQEGSMGLMKSVEKFKPQAG
Sbjct: 61 LKSQLLSGKSSREKLINANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMKSVEKFKPQAG 120
Query: 121 CRFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELA 180
CRF +YAYWWIRQ++R+A+F HSRTIRLPENVY LL K+ +AKK ++GN +PTKE++A
Sbjct: 121 CRFPTYAYWWIRQSVRKAIFQHSRTIRLPENVYALLSKVKDAKKECIQQGNRYPTKEDIA 180
Query: 181 RKIGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHA 240
G++V++L+ LLS R PLSMQQ+VW+DQDTT+QEITAD AIE P++ V+KQLMRRH
Sbjct: 181 SCAGMSVERLQNLLSNVRTPLSMQQSVWSDQDTTFQEITADNAIEAPELSVSKQLMRRHI 240
Query: 241 RNLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLAS 300
R LL+ L+P+ER+IIRLRFGI DG KSLSEIGTVFGLSKERVRQLE+RAL KLKQ L
Sbjct: 241 RGLLNVLSPKERKIIRLRFGIGDGKPKSLSEIGTVFGLSKERVRQLETRALYKLKQNLNK 300
Query: 301 HGLDAYANLL 310
HGLDAY++LL
Sbjct: 301 HGLDAYSDLL 310
>E4MX68_THEHA (tr|E4MX68) mRNA, clone: RTFL01-17-E04 OS=Thellungiella halophila
PE=2 SV=1
Length = 547
Score = 439 bits (1128), Expect = e-121, Method: Compositional matrix adjust.
Identities = 202/311 (64%), Positives = 262/311 (84%)
Query: 1 MFLWGPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYA 60
+FLWGPETK+LLT +EE++LI+ IQ+L +LE+VK +L+SQ G EPT+ EWA+ +GLS
Sbjct: 237 LFLWGPETKQLLTAKEEAELIAHIQHLIKLEKVKTKLESQNGCEPTIGEWAEAMGLSSPV 296
Query: 61 LQTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAG 120
L++++ G S+EKLI ANLR+VVH+AK Y RGL+FQDLLQEGSMGLMKSVEKFKPQ+G
Sbjct: 297 LKSEIHRGRSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSG 356
Query: 121 CRFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELA 180
CRFA+YAYWWIRQ+IR+++F +SRTIRLPENVY LLGK+ EA+K ++GN P+KE+LA
Sbjct: 357 CRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCIQDGNYRPSKEQLA 416
Query: 181 RKIGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHA 240
+GV+ +KL+ LL R PLSMQQ +W+DQDTT+QE+T D+ IETP + V KQLMR H
Sbjct: 417 SHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDTTFQEVTPDSGIETPSMSVGKQLMRNHV 476
Query: 241 RNLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLAS 300
RNLL+ L+P+E+RII+LRFGI+ G ++SLSEIG ++GLSKERVRQLESRAL +LKQ ++S
Sbjct: 477 RNLLNVLSPKEKRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQNMSS 536
Query: 301 HGLDAYANLLV 311
HGL+AYA+LLV
Sbjct: 537 HGLNAYADLLV 547
>D7LJA3_ARALL (tr|D7LJA3) RNA polymerase sigma-70 factor OS=Arabidopsis lyrata
subsp. lyrata GN=SIGF PE=4 SV=1
Length = 546
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 204/311 (65%), Positives = 260/311 (83%)
Query: 1 MFLWGPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYA 60
+FLWGPETK+LLT +EE++LIS IQ+L +LE+VK +L+SQ G EPT+ EWA+ +G+S
Sbjct: 236 LFLWGPETKQLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPD 295
Query: 61 LQTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAG 120
L++++ G S+EKLI ANLR+VVH+AK Y RGL+FQDLLQEGSMGLMKSVEKFKPQ+G
Sbjct: 296 LKSEIHRGRSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSG 355
Query: 121 CRFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELA 180
CRFA+YAYWWIRQ+IR+++F +SRTIRLPENVY LLGK+ EA+K +EGN P+KE+LA
Sbjct: 356 CRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEQLA 415
Query: 181 RKIGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHA 240
+GV+ +KL+ LL R PLSMQQ +W+DQDTT+QEIT D+ IETP + V KQ+MR H
Sbjct: 416 GHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDTTFQEITPDSGIETPTMSVGKQMMRNHV 475
Query: 241 RNLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLAS 300
RNLL+ L+P+ERRII+LRFGI+ G ++SLSEIG ++GLSKERVRQLESRAL +LKQ + S
Sbjct: 476 RNLLNVLSPKERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQHMNS 535
Query: 301 HGLDAYANLLV 311
HGL AYA+LLV
Sbjct: 536 HGLHAYADLLV 546
>R0HNL5_9BRAS (tr|R0HNL5) Uncharacterized protein OS=Capsella rubella
GN=CARUB_v10022939mg PE=4 SV=1
Length = 547
Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust.
Identities = 204/311 (65%), Positives = 259/311 (83%)
Query: 1 MFLWGPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYA 60
+FLWGPETK+LLT +EE++LIS IQ+L +LE+VK +L+SQ G EPT+ EWA+ +G+S
Sbjct: 237 LFLWGPETKQLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPV 296
Query: 61 LQTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAG 120
L++++ G S+EKLI ANLR+VVH+AK Y RGL+FQDLLQEGSMGLMKSVEKFKPQ+G
Sbjct: 297 LKSEIHRGRSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSG 356
Query: 121 CRFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELA 180
CRFA+YAYWWIRQ+IR+++F +SRTIRLPENVY LLGK+ EA+K +EGN P+KE+LA
Sbjct: 357 CRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEQLA 416
Query: 181 RKIGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHA 240
+GV+ +KL+ LL R PLSMQQ +W+DQDTT+QEIT D+ IE P + V KQLMR H
Sbjct: 417 GHVGVSKEKLDKLLYNTRTPLSMQQPIWSDQDTTFQEITPDSGIEIPTISVGKQLMRNHV 476
Query: 241 RNLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLAS 300
RNLL+ L+P+ER II+LRFGIE G ++SLSEIG ++GLSKERVRQLESRAL +LKQ ++S
Sbjct: 477 RNLLNVLSPKERSIIKLRFGIEGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQNMSS 536
Query: 301 HGLDAYANLLV 311
HGL AYA+LLV
Sbjct: 537 HGLHAYADLLV 547
>M4DL32_BRARP (tr|M4DL32) Uncharacterized protein OS=Brassica rapa subsp.
pekinensis GN=Bra017213 PE=4 SV=1
Length = 533
Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust.
Identities = 203/311 (65%), Positives = 261/311 (83%)
Query: 1 MFLWGPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYA 60
+FLWGPETK+LLT +EE++LI+ IQNL +LE+VK +L+SQ G EPT+AEWA+ +G+S
Sbjct: 223 LFLWGPETKQLLTAKEEAELITHIQNLIKLEKVKTKLESQNGCEPTIAEWAEALGISGPV 282
Query: 61 LQTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAG 120
L++++ G S+EKLI ANLR+VVH+AK Y RGL+FQDLLQEGSMGLMKSVEKFKPQ+G
Sbjct: 283 LKSEIHRGRSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSG 342
Query: 121 CRFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELA 180
RFA+YAYWWIRQ+IR+++F +SRTIRLPENVY LLGK+ EA+K +EGN P+KEELA
Sbjct: 343 FRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYLPSKEELA 402
Query: 181 RKIGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHA 240
+GV+ +KL+ LL R PLSMQQ +W+DQD T+QE+T D+ IETPD+ V KQ+MR H
Sbjct: 403 GHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDITFQEVTPDSGIETPDMSVGKQMMRNHV 462
Query: 241 RNLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLAS 300
RNLL+ L+P+ER+II+LRFGI+ G ++SLSEIG ++GLSKERVRQLESRAL +LKQ + S
Sbjct: 463 RNLLNVLSPKERKIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQNMNS 522
Query: 301 HGLDAYANLLV 311
HGL+AYA+LLV
Sbjct: 523 HGLNAYADLLV 533
>M1BY20_SOLTU (tr|M1BY20) Uncharacterized protein OS=Solanum tuberosum
GN=PGSC0003DMG400021553 PE=4 SV=1
Length = 582
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 213/330 (64%), Positives = 259/330 (78%), Gaps = 20/330 (6%)
Query: 1 MFLWGPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYA 60
MFLWGPETK+LLT +EES+LI +IQ +L+EVK +LQ QF EPT EWA+ G++
Sbjct: 252 MFLWGPETKQLLTAKEESELIVKIQISMKLQEVKHQLQIQFAHEPTSVEWAEAAGITSRE 311
Query: 61 LQTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAG 120
L++QL SG S+EKLI+ANLRMVVH+AK Y GRGL+ QDLLQEGSMGLMKSVEKFKPQAG
Sbjct: 312 LKSQLLSGKSSREKLINANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMKSVEKFKPQAG 371
Query: 121 CRFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELA 180
CRF +YAYWWIRQ++R+A+F HSRTIRLPENVY LL K+ +AKK ++GN +PTKE++A
Sbjct: 372 CRFPTYAYWWIRQSVRKAIFQHSRTIRLPENVYALLSKVKDAKKECIQQGNRYPTKEDIA 431
Query: 181 RKIGVTVDKLEILLSAARIPLSMQQTVWTDQDTTY--------------------QEITA 220
G++V++L+ LLS R PLSMQQ+VW+DQDTT+ QEITA
Sbjct: 432 SCAGMSVERLQNLLSNVRTPLSMQQSVWSDQDTTFQEIFDLVLTVAKERISFFSIQEITA 491
Query: 221 DTAIETPDVYVAKQLMRRHARNLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSK 280
D AIE P++ V+KQLMRRH R LL+ L+P+ER+IIRLRFGI DG KSLSEIGTVFGLSK
Sbjct: 492 DNAIEAPELSVSKQLMRRHIRGLLNVLSPKERKIIRLRFGIGDGKPKSLSEIGTVFGLSK 551
Query: 281 ERVRQLESRALDKLKQCLASHGLDAYANLL 310
ERVRQLE+RAL KLKQ L HGLDAY++LL
Sbjct: 552 ERVRQLETRALYKLKQNLNKHGLDAYSDLL 581
>M0RSY5_MUSAM (tr|M0RSY5) Uncharacterized protein OS=Musa acuminata subsp.
malaccensis PE=4 SV=1
Length = 579
Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust.
Identities = 191/313 (61%), Positives = 248/313 (79%), Gaps = 3/313 (0%)
Query: 1 MFLWGPETKKLLTFEEESQLISQIQ--NLFRLEEVKIRLQSQFGREPTMAEWADGVGLSC 58
+FLWGPETK+LLT +EE L +I+ +L RLEEVK RLQSQ REPT+AEWA VG+SC
Sbjct: 268 LFLWGPETKQLLTVKEEKDLFVKIEACDLMRLEEVKERLQSQSDREPTLAEWAQAVGMSC 327
Query: 59 YALQTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQ 118
LQ+ L SG R++EK+I+AN R+VVHVA+ Y G+GL+ QDLLQEGS GLMKS+EKFKP+
Sbjct: 328 QDLQSCLSSGRRNREKMIYANFRLVVHVARQYEGKGLNIQDLLQEGSRGLMKSLEKFKPR 387
Query: 119 AGCRFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEE 178
AGCRF +YAYWWIRQ+I++A+F +SRTIRLPEN + L + EA++ +EG + PT EE
Sbjct: 388 AGCRFPTYAYWWIRQSIKKAIFKNSRTIRLPENAFARLKSIREARRLCIQEG-LLPTNEE 446
Query: 179 LARKIGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRR 238
+A+++G+TV KLEILL +R P+S+Q+ W DQD T+QE AD IE PD+ +AKQ+MR+
Sbjct: 447 IAKRVGITVQKLEILLLNSRYPISIQRHPWLDQDVTFQETVADPKIEIPDLVIAKQMMRQ 506
Query: 239 HARNLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCL 298
H RNLL+ L PRER I++ RFGI +KSLSEIG ++GLSKERVRQLES+AL KL++CL
Sbjct: 507 HVRNLLNILKPRERVIVQYRFGIRCSEQKSLSEIGAMYGLSKERVRQLESQALGKLRKCL 566
Query: 299 ASHGLDAYANLLV 311
S GL+AY +LL+
Sbjct: 567 QSQGLEAYLDLLI 579
>G7L2W1_MEDTR (tr|G7L2W1) RNA polymerase sigma factor rpoD OS=Medicago truncatula
GN=MTR_7g101610 PE=4 SV=1
Length = 365
Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust.
Identities = 175/250 (70%), Positives = 209/250 (83%), Gaps = 1/250 (0%)
Query: 62 QTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGC 121
Q G RSK+KLIHANLR+VVH+AK Y G S L EGSMGLM+SVEKFKPQAGC
Sbjct: 117 QNDFIGGNRSKDKLIHANLRLVVHIAKYYQG-AWSQPXGLIEGSMGLMRSVEKFKPQAGC 175
Query: 122 RFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELAR 181
RF++YAYWWIRQTIRRALFLHS+TIRLPEN Y LLGK+ EAKK Y +EGN+HPTKEE+A+
Sbjct: 176 RFSTYAYWWIRQTIRRALFLHSKTIRLPENFYALLGKIAEAKKSYIKEGNLHPTKEEIAK 235
Query: 182 KIGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHAR 241
++G+TVD+LE+LL + R PLSM++ VW D DTT+QEITAD++IE P+V VAKQLMR H R
Sbjct: 236 RVGITVDRLEMLLFSTRTPLSMERAVWADSDTTFQEITADSSIEIPNVCVAKQLMRSHVR 295
Query: 242 NLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASH 301
NLL L P+ER+++RLRFGIEDGYEKSL+EIG V G+ KERVRQLES+AL+KLKQCL S
Sbjct: 296 NLLGILPPKERKVLRLRFGIEDGYEKSLTEIGKVLGVCKERVRQLESQALNKLKQCLVSQ 355
Query: 302 GLDAYANLLV 311
LDAY +L+V
Sbjct: 356 QLDAYVDLIV 365
>I1K2F4_SOYBN (tr|I1K2F4) Uncharacterized protein (Fragment) OS=Glycine max PE=4
SV=1
Length = 312
Score = 349 bits (896), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 165/219 (75%), Positives = 191/219 (87%), Gaps = 3/219 (1%)
Query: 1 MFLWGPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYA 60
+FLWGPETK+LLT E+ESQLISQIQ+L RLEEVK LQSQFGREPTMAEWA+G GL+C
Sbjct: 74 LFLWGPETKQLLTLEQESQLISQIQDLLRLEEVKTNLQSQFGREPTMAEWAEGAGLNCRL 133
Query: 61 LQTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAG 120
LQ+QL SG RS+EKLI ANLRMVVHVAK+Y GRGLS QDLLQEGSMGLMKSVEKF P AG
Sbjct: 134 LQSQLHSGIRSREKLIQANLRMVVHVAKSYQGRGLSLQDLLQEGSMGLMKSVEKFNPLAG 193
Query: 121 CRFASYAYWWIRQTIRRALFLHSRTIRLP---ENVYTLLGKLIEAKKFYNREGNVHPTKE 177
RF +YA+WWIRQ IR+A+F HSRTIRLP E V+ LLGK+IEAKK Y +EGN+HPTKE
Sbjct: 194 SRFGNYAFWWIRQAIRKAVFRHSRTIRLPINLEKVFILLGKVIEAKKLYIQEGNLHPTKE 253
Query: 178 ELARKIGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQ 216
ELAR++GVTV+K++ LL +ARIP+SMQQTVW DQ+TT+Q
Sbjct: 254 ELARRVGVTVEKIDKLLFSARIPISMQQTVWADQNTTFQ 292
>K4A7Y8_SETIT (tr|K4A7Y8) Uncharacterized protein OS=Setaria italica
GN=Si034994m.g PE=4 SV=1
Length = 554
Score = 333 bits (853), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 159/311 (51%), Positives = 219/311 (70%), Gaps = 1/311 (0%)
Query: 1 MFLWGPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYA 60
+FL ET + LT +EE Q+ SQIQNL +LEE + +L+ Q GREPT+AEWA VG+SC
Sbjct: 245 LFLRDRETTEFLTAKEEKQMFSQIQNLMKLEEAQRKLEVQCGREPTVAEWAAAVGMSCRE 304
Query: 61 LQTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAG 120
LQ+ +R G R +EK+ +N R+V+HVA+ Y G GL QDL+Q+G GLMK+ EKF P G
Sbjct: 305 LQSSIRIGRRCREKMARSNFRLVIHVARKYEGYGLDIQDLVQDGCCGLMKTFEKFNPSKG 364
Query: 121 CRFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELA 180
CRF +YAYWWIRQ+I++++F +SR IRLPE+V+ LL K+ +A+ EG PT E +A
Sbjct: 365 CRFPTYAYWWIRQSIKKSIFKNSRLIRLPESVFALLRKVGKARLECIMEGE-QPTNENVA 423
Query: 181 RKIGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHA 240
R+ G+T++KL L + R P SMQ VW+D TYQEIT D E P++ V + +MR+
Sbjct: 424 RRAGITIEKLARLRAKTRKPRSMQDRVWSDDGVTYQEITEDPNFEPPELSVDRLMMRQQV 483
Query: 241 RNLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLAS 300
RN L L+PRE+ II RFGI DG K+L IG ++GLSKER+RQ++++ALDKLK+ +++
Sbjct: 484 RNFLAILSPREKEIIEHRFGIHDGEPKTLHVIGDMYGLSKERIRQVQNKALDKLKRSVSA 543
Query: 301 HGLDAYANLLV 311
G D Y +LL
Sbjct: 544 QGFDVYFDLLT 554
>I1GKK0_BRADI (tr|I1GKK0) Uncharacterized protein OS=Brachypodium distachyon
GN=BRADI1G00750 PE=4 SV=1
Length = 564
Score = 329 bits (844), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 157/311 (50%), Positives = 215/311 (69%), Gaps = 1/311 (0%)
Query: 1 MFLWGPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYA 60
+FL PET + LT +EE QL S++QNL +LEE + RL++Q GREP + EWA VG+SC
Sbjct: 252 LFLRDPETTEFLTAKEEKQLFSEVQNLMKLEEAQRRLEAQCGREPAIEEWAKAVGMSCKD 311
Query: 61 LQTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAG 120
LQ+ + G R +EK+ +N R+V+HVA+ Y G GL +DL+Q+G GLMK+ EKF P G
Sbjct: 312 LQSSIHIGRRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKG 371
Query: 121 CRFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELA 180
CRF +YAYWWIRQ I++++F HSR IRLPE+VY LL K+ +A+ EG PT E +A
Sbjct: 372 CRFPTYAYWWIRQAIKKSIFKHSRLIRLPESVYALLKKVGKARLECILEGE-QPTNENVA 430
Query: 181 RKIGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHA 240
R+ G+T++KL L + R S+Q VW D T+QEIT D IE PD+ V + +MR+
Sbjct: 431 RRAGITIEKLAKLKAKTRKSRSLQDRVWPDDGVTFQEITEDPNIEPPDLVVDRMMMRQQV 490
Query: 241 RNLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLAS 300
R+ L L+ RE+ II RFGI DG K+L IG ++GLSKER+RQL++RALDKLK+ +++
Sbjct: 491 RDFLGILSTREKEIIEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSN 550
Query: 301 HGLDAYANLLV 311
G D Y +LL
Sbjct: 551 QGFDVYLDLLT 561
>J3MRH6_ORYBR (tr|J3MRH6) Uncharacterized protein OS=Oryza brachyantha
GN=OB08G17050 PE=4 SV=1
Length = 577
Score = 325 bits (833), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 157/311 (50%), Positives = 215/311 (69%), Gaps = 1/311 (0%)
Query: 1 MFLWGPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYA 60
+FL ET + LT +EE L S+IQ L +LEE +L+ Q GREPT+AEWA+ VG+S
Sbjct: 268 LFLRDRETTEFLTAKEERHLFSKIQILMKLEEAHRKLEVQCGREPTLAEWAEAVGMSSKE 327
Query: 61 LQTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAG 120
LQ+ +R+G R +EK+ +N R+V+HVA+ Y G GL QDL+Q+G GLMK+ EKF P G
Sbjct: 328 LQSSIRTGRRCREKMARSNFRLVIHVARKYEGYGLDIQDLVQDGCCGLMKTFEKFNPSKG 387
Query: 121 CRFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELA 180
CRF +YAYWWIRQ+I++++F +SR IRLPE+VY LL K+ +A+ EG PT +A
Sbjct: 388 CRFPTYAYWWIRQSIKKSIFKNSRLIRLPESVYALLRKVGKARMECIMEGE-QPTNANVA 446
Query: 181 RKIGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHA 240
R+ G+T++KL L + R P SMQ VW+D+ T+QEIT D +E PD+ V + +MR+
Sbjct: 447 RRAGITIEKLAKLRAKTRKPRSMQDHVWSDEGVTFQEITEDPNVEPPDLSVDRMMMRQQV 506
Query: 241 RNLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLAS 300
R+ L L+PRE+ II RFGI DG K+L IG +FGLSKER+RQL++RAL KLK ++
Sbjct: 507 RDFLGILSPREKEIIEHRFGIHDGEPKTLHVIGDMFGLSKERIRQLQNRALQKLKTSAST 566
Query: 301 HGLDAYANLLV 311
G D Y +LL
Sbjct: 567 QGFDVYFDLLT 577
>M0WB57_HORVD (tr|M0WB57) Uncharacterized protein OS=Hordeum vulgare var.
distichum PE=4 SV=1
Length = 553
Score = 324 bits (831), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 155/311 (49%), Positives = 214/311 (68%), Gaps = 1/311 (0%)
Query: 1 MFLWGPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYA 60
+FL ET + LT +EE L SQIQNL RLEE + RL+ Q GREPT+ EWA VG+SC
Sbjct: 241 LFLRDRETTEFLTAKEERHLFSQIQNLMRLEEAQRRLEEQCGREPTLPEWAQAVGMSCKD 300
Query: 61 LQTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAG 120
LQ+ + G R +EK+ +N R+V+HVA+ Y G GL +DL+Q+G GLMK+ EKF P G
Sbjct: 301 LQSSIHIGRRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKG 360
Query: 121 CRFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELA 180
CRF +YAYWWIRQ I++++F HSR IRLPE+VY L K+ +A+ EG PT + +A
Sbjct: 361 CRFPTYAYWWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILEGE-QPTNQNVA 419
Query: 181 RKIGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHA 240
R+ G++++KL L + R P SMQ VW++ T+QEIT D I++PD+ V + +MR+
Sbjct: 420 RRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQV 479
Query: 241 RNLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLAS 300
R L L+ RE+ I+ RFGI DG K+L IG ++GLSKER+RQL++RALDKLK+ +++
Sbjct: 480 REFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVST 539
Query: 301 HGLDAYANLLV 311
G D Y +LL
Sbjct: 540 QGFDVYLDLLT 550
>M0WB51_HORVD (tr|M0WB51) Uncharacterized protein OS=Hordeum vulgare var.
distichum PE=4 SV=1
Length = 515
Score = 324 bits (831), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 155/311 (49%), Positives = 214/311 (68%), Gaps = 1/311 (0%)
Query: 1 MFLWGPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYA 60
+FL ET + LT +EE L SQIQNL RLEE + RL+ Q GREPT+ EWA VG+SC
Sbjct: 203 LFLRDRETTEFLTAKEERHLFSQIQNLMRLEEAQRRLEEQCGREPTLPEWAQAVGMSCKD 262
Query: 61 LQTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAG 120
LQ+ + G R +EK+ +N R+V+HVA+ Y G GL +DL+Q+G GLMK+ EKF P G
Sbjct: 263 LQSSIHIGRRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKG 322
Query: 121 CRFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELA 180
CRF +YAYWWIRQ I++++F HSR IRLPE+VY L K+ +A+ EG PT + +A
Sbjct: 323 CRFPTYAYWWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILEGE-QPTNQNVA 381
Query: 181 RKIGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHA 240
R+ G++++KL L + R P SMQ VW++ T+QEIT D I++PD+ V + +MR+
Sbjct: 382 RRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQV 441
Query: 241 RNLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLAS 300
R L L+ RE+ I+ RFGI DG K+L IG ++GLSKER+RQL++RALDKLK+ +++
Sbjct: 442 REFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVST 501
Query: 301 HGLDAYANLLV 311
G D Y +LL
Sbjct: 502 QGFDVYLDLLT 512
>M0WB53_HORVD (tr|M0WB53) Uncharacterized protein OS=Hordeum vulgare var.
distichum PE=4 SV=1
Length = 550
Score = 324 bits (830), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 155/311 (49%), Positives = 214/311 (68%), Gaps = 1/311 (0%)
Query: 1 MFLWGPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYA 60
+FL ET + LT +EE L SQIQNL RLEE + RL+ Q GREPT+ EWA VG+SC
Sbjct: 238 LFLRDRETTEFLTAKEERHLFSQIQNLMRLEEAQRRLEEQCGREPTLPEWAQAVGMSCKD 297
Query: 61 LQTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAG 120
LQ+ + G R +EK+ +N R+V+HVA+ Y G GL +DL+Q+G GLMK+ EKF P G
Sbjct: 298 LQSSIHIGRRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKG 357
Query: 121 CRFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELA 180
CRF +YAYWWIRQ I++++F HSR IRLPE+VY L K+ +A+ EG PT + +A
Sbjct: 358 CRFPTYAYWWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILEGE-QPTNQNVA 416
Query: 181 RKIGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHA 240
R+ G++++KL L + R P SMQ VW++ T+QEIT D I++PD+ V + +MR+
Sbjct: 417 RRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQV 476
Query: 241 RNLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLAS 300
R L L+ RE+ I+ RFGI DG K+L IG ++GLSKER+RQL++RALDKLK+ +++
Sbjct: 477 REFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVST 536
Query: 301 HGLDAYANLLV 311
G D Y +LL
Sbjct: 537 QGFDVYLDLLT 547
>M0WB48_HORVD (tr|M0WB48) Uncharacterized protein OS=Hordeum vulgare var.
distichum PE=4 SV=1
Length = 397
Score = 324 bits (830), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 155/311 (49%), Positives = 214/311 (68%), Gaps = 1/311 (0%)
Query: 1 MFLWGPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYA 60
+FL ET + LT +EE L SQIQNL RLEE + RL+ Q GREPT+ EWA VG+SC
Sbjct: 85 LFLRDRETTEFLTAKEERHLFSQIQNLMRLEEAQRRLEEQCGREPTLPEWAQAVGMSCKD 144
Query: 61 LQTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAG 120
LQ+ + G R +EK+ +N R+V+HVA+ Y G GL +DL+Q+G GLMK+ EKF P G
Sbjct: 145 LQSSIHIGRRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKG 204
Query: 121 CRFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELA 180
CRF +YAYWWIRQ I++++F HSR IRLPE+VY L K+ +A+ EG PT + +A
Sbjct: 205 CRFPTYAYWWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILEGE-QPTNQNVA 263
Query: 181 RKIGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHA 240
R+ G++++KL L + R P SMQ VW++ T+QEIT D I++PD+ V + +MR+
Sbjct: 264 RRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQV 323
Query: 241 RNLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLAS 300
R L L+ RE+ I+ RFGI DG K+L IG ++GLSKER+RQL++RALDKLK+ +++
Sbjct: 324 REFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVST 383
Query: 301 HGLDAYANLLV 311
G D Y +LL
Sbjct: 384 QGFDVYLDLLT 394
>Q84LK8_ORYSJ (tr|Q84LK8) Os08g0242800 protein OS=Oryza sativa subsp. japonica
GN=SIG6 PE=2 SV=1
Length = 572
Score = 323 bits (829), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 156/311 (50%), Positives = 216/311 (69%), Gaps = 1/311 (0%)
Query: 1 MFLWGPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYA 60
+FL ET + LT +EE L S+IQ L ++EE +L+ Q GREPT+AEWA+ VG+S
Sbjct: 263 LFLRDRETTEFLTAKEERHLFSKIQILMKIEEAHRKLEVQCGREPTLAEWAEAVGMSSKE 322
Query: 61 LQTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAG 120
LQ+ +R+G R +EK+ +N R+V+HVA+ Y G GL QDL+Q+G GLMK+ EKF P G
Sbjct: 323 LQSSIRTGRRCREKMARSNFRLVIHVARKYEGYGLDIQDLVQDGCSGLMKTFEKFNPSKG 382
Query: 121 CRFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELA 180
CRF +YAYWWIRQ+I++++F +SR IRLPE+VY LL K+ +A+ EG PT +A
Sbjct: 383 CRFPTYAYWWIRQSIKKSIFKNSRLIRLPESVYALLRKVGKARMECIMEGE-QPTNANVA 441
Query: 181 RKIGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHA 240
R+ G+T++KL L + R P SMQ VW+D+ T+QEIT D +E PD+ V + +MR+
Sbjct: 442 RRAGITIEKLAKLRAKTRKPRSMQDHVWSDEGVTFQEITEDPNVEPPDLSVDRMMMRQQV 501
Query: 241 RNLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLAS 300
R+ L L+PRE+ II RFGI DG K+L IG +FGLSKER+RQL++RAL+KLK+ +
Sbjct: 502 RDFLGILSPREKEIIEHRFGIHDGEPKTLHVIGDMFGLSKERIRQLQNRALEKLKRSASL 561
Query: 301 HGLDAYANLLV 311
G D Y +LL
Sbjct: 562 QGFDVYFDLLT 572
>I1QGT9_ORYGL (tr|I1QGT9) Uncharacterized protein OS=Oryza glaberrima PE=4 SV=1
Length = 572
Score = 323 bits (829), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 156/311 (50%), Positives = 216/311 (69%), Gaps = 1/311 (0%)
Query: 1 MFLWGPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYA 60
+FL ET + LT +EE L S+IQ L ++EE +L+ Q GREPT+AEWA+ VG+S
Sbjct: 263 LFLRDRETTEFLTAKEERHLFSKIQILMKIEEAHRKLEVQCGREPTLAEWAEAVGMSSKE 322
Query: 61 LQTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAG 120
LQ+ +R+G R +EK+ +N R+V+HVA+ Y G GL QDL+Q+G GLMK+ EKF P G
Sbjct: 323 LQSSIRTGRRCREKMARSNFRLVIHVARKYEGYGLDIQDLVQDGCSGLMKTFEKFNPSKG 382
Query: 121 CRFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELA 180
CRF +YAYWWIRQ+I++++F +SR IRLPE+VY LL K+ +A+ EG PT +A
Sbjct: 383 CRFPTYAYWWIRQSIKKSIFKNSRLIRLPESVYALLRKVGKARMECIMEGE-QPTNANVA 441
Query: 181 RKIGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHA 240
R+ G+T++KL L + R P SMQ VW+D+ T+QEIT D +E PD+ V + +MR+
Sbjct: 442 RRAGITIEKLAKLRAKTRKPRSMQDHVWSDEGVTFQEITEDPNVEPPDLSVDRMMMRQQV 501
Query: 241 RNLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLAS 300
R+ L L+PRE+ II RFGI DG K+L IG +FGLSKER+RQL++RAL+KLK+ +
Sbjct: 502 RDFLGILSPREKEIIEHRFGIHDGEPKTLHVIGDMFGLSKERIRQLQNRALEKLKRSASL 561
Query: 301 HGLDAYANLLV 311
G D Y +LL
Sbjct: 562 QGFDVYFDLLT 572
>Q9ZPL0_MAIZE (tr|Q9ZPL0) Sigma factor SIG6 OS=Zea mays GN=sig6 PE=2 SV=1
Length = 541
Score = 319 bits (817), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 156/312 (50%), Positives = 216/312 (69%), Gaps = 2/312 (0%)
Query: 1 MFLWGPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYA 60
+FL ET + LT +EE Q+ SQIQNL +LE + LQ+Q GREPT+ EWA VG+SC
Sbjct: 231 LFLRDRETTEFLTAKEEKQMFSQIQNLMKLEGAQRNLQAQCGREPTVEEWAQAVGMSCRE 290
Query: 61 LQTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAG 120
LQ+ +R+G R +EK+ +N R+V+HVA+ Y G GL QDL+Q+G GLMK+ EKF P G
Sbjct: 291 LQSCVRTGRRCREKMARSNFRLVIHVARKYEGCGLDIQDLVQDGCCGLMKTFEKFNPSKG 350
Query: 121 CRFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELA 180
CRF +YAYWWIRQ+I++++F +SR IRLPE+VY LL K+ +A+ +G PT E +A
Sbjct: 351 CRFPTYAYWWIRQSIKKSIFKNSRLIRLPESVYALLRKVGKARMECIMDGE-QPTNEVVA 409
Query: 181 RKIGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHA 240
R+ G+T++KL L + R SMQ VW+D TYQEIT D IE P+V V + +MR+
Sbjct: 410 RRAGITIEKLAKLRAKTRKVRSMQDRVWSDDGVTYQEITEDPNIEGPEVSVDRLMMRQQV 469
Query: 241 RNLL-HTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLA 299
R+ L L+PRE+ II RFGI DG K+L IG ++GLSKER+RQ++++ALDKL+ ++
Sbjct: 470 RSFLTGILSPREKEIIEHRFGIHDGQPKTLHVIGDMYGLSKERIRQVQNKALDKLRNSIS 529
Query: 300 SHGLDAYANLLV 311
+ G Y +LL
Sbjct: 530 AQGFHVYFDLLT 541
>B4FJ30_MAIZE (tr|B4FJ30) SIGMA70-like transcription factor OS=Zea mays PE=2 SV=1
Length = 541
Score = 318 bits (816), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 156/312 (50%), Positives = 216/312 (69%), Gaps = 2/312 (0%)
Query: 1 MFLWGPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYA 60
+FL ET + LT +EE Q+ SQIQNL +LE + LQ+Q GREPT+ EWA VG+SC
Sbjct: 231 LFLRDRETTEFLTAKEEKQMFSQIQNLMKLEGAQRNLQAQCGREPTVEEWAQAVGMSCRE 290
Query: 61 LQTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAG 120
LQ+ +R+G R +EK+ +N R+V+HVA+ Y G GL QDL+Q+G GLMK+ EKF P G
Sbjct: 291 LQSCVRTGRRCREKMARSNFRLVIHVARKYEGCGLDIQDLVQDGCCGLMKTFEKFNPSKG 350
Query: 121 CRFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELA 180
CRF +YAYWWIRQ+I++++F +SR IRLPE+VY LL K+ +A+ +G PT E +A
Sbjct: 351 CRFPTYAYWWIRQSIKKSIFKNSRLIRLPESVYALLRKVGKARMECIMDGE-QPTNEVVA 409
Query: 181 RKIGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHA 240
R+ G+T++KL L + R SMQ VW+D TYQEIT D IE P+V V + +MR+
Sbjct: 410 RRAGITIEKLAKLRAKTRKVRSMQDRVWSDDGVTYQEITEDPNIEGPEVSVDRLMMRQQV 469
Query: 241 RNLL-HTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLA 299
R+ L L+PRE+ II RFGI DG K+L IG ++GLSKER+RQ++++ALDKL+ ++
Sbjct: 470 RSFLTGILSPREKEIIEHRFGIHDGQPKTLHVIGDMYGLSKERIRQVQNKALDKLRNSIS 529
Query: 300 SHGLDAYANLLV 311
+ G Y +LL
Sbjct: 530 AQGFHVYFDLLT 541
>M8A8U2_TRIUA (tr|M8A8U2) RNA polymerase sigma factor rpoD OS=Triticum urartu
GN=TRIUR3_06257 PE=4 SV=1
Length = 553
Score = 317 bits (813), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 156/317 (49%), Positives = 214/317 (67%), Gaps = 7/317 (2%)
Query: 1 MFLWGPETKKLLTFEEESQLISQIQ------NLFRLEEVKIRLQSQFGREPTMAEWADGV 54
+FL ET + LT +EE L SQIQ NL +LEE + RL++Q GREPT+ EWA V
Sbjct: 235 LFLRDRETTEFLTAKEERHLFSQIQACSFFLNLMKLEEAQRRLEAQCGREPTLPEWAQAV 294
Query: 55 GLSCYALQTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEK 114
G+SC LQ+ + G R +EK+ +N R+V+HVA+ Y G GL +DL+Q+G GLMK+ EK
Sbjct: 295 GMSCKELQSSIHIGRRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEK 354
Query: 115 FKPQAGCRFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHP 174
F P GCRF +YAYWWIRQ I++++F HSR IRLPE+VY L K+ +A+ EG P
Sbjct: 355 FNPSKGCRFPTYAYWWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILEGE-QP 413
Query: 175 TKEELARKIGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQ 234
T + +AR+ G+T++KL L + R P SMQ VW++ T+QEIT D I+ PD+ V +
Sbjct: 414 TNQNVARRAGITIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDPPDLVVDRI 473
Query: 235 LMRRHARNLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKL 294
+MR+ R L L+ RE+ II RFGI DG K+L IG ++GLSKER+RQL++RALDKL
Sbjct: 474 MMRQQVREFLGILSTREKEIIEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKL 533
Query: 295 KQCLASHGLDAYANLLV 311
K+ +++ G D Y +LL
Sbjct: 534 KRSVSTQGFDVYLDLLT 550
>A3BR19_ORYSJ (tr|A3BR19) Putative uncharacterized protein OS=Oryza sativa subsp.
japonica GN=OsJ_26557 PE=4 SV=1
Length = 497
Score = 314 bits (804), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 156/327 (47%), Positives = 216/327 (66%), Gaps = 17/327 (5%)
Query: 1 MFLWGPETKKLLTFEEESQLISQIQN----------------LFRLEEVKIRLQSQFGRE 44
+FL ET + LT +EE L S+IQ L ++EE +L+ Q GRE
Sbjct: 172 LFLRDRETTEFLTAKEERHLFSKIQAKPYFYPVIFIFRTAQILMKIEEAHRKLEVQCGRE 231
Query: 45 PTMAEWADGVGLSCYALQTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEG 104
PT+AEWA+ VG+S LQ+ +R+G R +EK+ +N R+V+HVA+ Y G GL QDL+Q+G
Sbjct: 232 PTLAEWAEAVGMSSKELQSSIRTGRRCREKMARSNFRLVIHVARKYEGYGLDIQDLVQDG 291
Query: 105 SMGLMKSVEKFKPQAGCRFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKK 164
GLMK+ EKF P GCRF +YAYWWIRQ+I++++F +SR IRLPE+VY LL K+ +A+
Sbjct: 292 CSGLMKTFEKFNPSKGCRFPTYAYWWIRQSIKKSIFKNSRLIRLPESVYALLRKVGKARM 351
Query: 165 FYNREGNVHPTKEELARKIGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAI 224
EG PT +AR+ G+T++KL L + R P SMQ VW+D+ T+QEIT D +
Sbjct: 352 ECIMEGE-QPTNANVARRAGITIEKLAKLRAKTRKPRSMQDHVWSDEGVTFQEITEDPNV 410
Query: 225 ETPDVYVAKQLMRRHARNLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVR 284
E PD+ V + +MR+ R+ L L+PRE+ II RFGI DG K+L IG +FGLSKER+R
Sbjct: 411 EPPDLSVDRMMMRQQVRDFLGILSPREKEIIEHRFGIHDGEPKTLHVIGDMFGLSKERIR 470
Query: 285 QLESRALDKLKQCLASHGLDAYANLLV 311
QL++RAL+KLK+ + G D Y +LL
Sbjct: 471 QLQNRALEKLKRSASLQGFDVYFDLLT 497
>B8BC85_ORYSI (tr|B8BC85) Putative uncharacterized protein OS=Oryza sativa subsp.
indica GN=OsI_28384 PE=4 SV=1
Length = 537
Score = 313 bits (803), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 156/327 (47%), Positives = 216/327 (66%), Gaps = 17/327 (5%)
Query: 1 MFLWGPETKKLLTFEEESQLISQIQN----------------LFRLEEVKIRLQSQFGRE 44
+FL ET + LT +EE L S+IQ L ++EE +L+ Q GRE
Sbjct: 212 LFLRDRETTEFLTAKEERHLFSKIQAKPYFYPVIFIFRTAQILMKIEEAHRKLEVQCGRE 271
Query: 45 PTMAEWADGVGLSCYALQTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEG 104
PT+AEWA+ VG+S LQ+ +R+G R +EK+ +N R+V+HVA+ Y G GL QDL+Q+G
Sbjct: 272 PTLAEWAEAVGMSSKELQSSIRTGRRCREKMARSNFRLVIHVARKYEGYGLDIQDLVQDG 331
Query: 105 SMGLMKSVEKFKPQAGCRFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKK 164
GLMK+ EKF P GCRF +YAYWWIRQ+I++++F +SR IRLPE+VY LL K+ +A+
Sbjct: 332 CSGLMKTFEKFNPSKGCRFPTYAYWWIRQSIKKSIFKNSRLIRLPESVYALLRKVGKARM 391
Query: 165 FYNREGNVHPTKEELARKIGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAI 224
EG PT +AR+ G+T++KL L + R P SMQ VW+D+ T+QEIT D +
Sbjct: 392 ECIMEGE-QPTNANVARRAGITIEKLAKLRAKTRKPRSMQDHVWSDEGVTFQEITEDPNV 450
Query: 225 ETPDVYVAKQLMRRHARNLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVR 284
E PD+ V + +MR+ R+ L L+PRE+ II RFGI DG K+L IG +FGLSKER+R
Sbjct: 451 EPPDLSVDRMMMRQQVRDFLGILSPREKEIIEHRFGIHDGEPKTLHVIGDMFGLSKERIR 510
Query: 285 QLESRALDKLKQCLASHGLDAYANLLV 311
QL++RAL+KLK+ + G D Y +LL
Sbjct: 511 QLQNRALEKLKRSASLQGFDVYFDLLT 537
>R0FW66_9BRAS (tr|R0FW66) Uncharacterized protein OS=Capsella rubella
GN=CARUB_v10022939mg PE=4 SV=1
Length = 456
Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 139/216 (64%), Positives = 180/216 (83%)
Query: 1 MFLWGPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYA 60
+FLWGPETK+LLT +EE++LIS IQ+L +LE+VK +L+SQ G EPT+ EWA+ +G+S
Sbjct: 237 LFLWGPETKQLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPV 296
Query: 61 LQTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAG 120
L++++ G S+EKLI ANLR+VVH+AK Y RGL+FQDLLQEGSMGLMKSVEKFKPQ+G
Sbjct: 297 LKSEIHRGRSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSG 356
Query: 121 CRFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELA 180
CRFA+YAYWWIRQ+IR+++F +SRTIRLPENVY LLGK+ EA+K +EGN P+KE+LA
Sbjct: 357 CRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEQLA 416
Query: 181 RKIGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQ 216
+GV+ +KL+ LL R PLSMQQ +W+DQDTT+Q
Sbjct: 417 GHVGVSKEKLDKLLYNTRTPLSMQQPIWSDQDTTFQ 452
>M1BY23_SOLTU (tr|M1BY23) Uncharacterized protein OS=Solanum tuberosum
GN=PGSC0003DMG400021553 PE=4 SV=1
Length = 385
Score = 303 bits (776), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 142/216 (65%), Positives = 178/216 (82%)
Query: 1 MFLWGPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYA 60
MFLWGPETK+LLT +EES+LI +IQ +L+EVK +LQ QF EPT EWA+ G++
Sbjct: 105 MFLWGPETKQLLTAKEESELIVKIQISMKLQEVKHQLQIQFAHEPTSVEWAEAAGITSRE 164
Query: 61 LQTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAG 120
L++QL SG S+EKLI+ANLRMVVH+AK Y GRGL+ QDLLQEGSMGLMKSVEKFKPQAG
Sbjct: 165 LKSQLLSGKSSREKLINANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMKSVEKFKPQAG 224
Query: 121 CRFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELA 180
CRF +YAYWWIRQ++R+A+F HSRTIRLPENVY LL K+ +AKK ++GN +PTKE++A
Sbjct: 225 CRFPTYAYWWIRQSVRKAIFQHSRTIRLPENVYALLSKVKDAKKECIQQGNRYPTKEDIA 284
Query: 181 RKIGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQ 216
G++V++L+ LLS R PLSMQQ+VW+DQDTT+Q
Sbjct: 285 SCAGMSVERLQNLLSNVRTPLSMQQSVWSDQDTTFQ 320
>M8BZZ6_AEGTA (tr|M8BZZ6) RNA polymerase sigma factor rpoD OS=Aegilops tauschii
GN=F775_07378 PE=4 SV=1
Length = 551
Score = 300 bits (768), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 142/287 (49%), Positives = 197/287 (68%), Gaps = 1/287 (0%)
Query: 25 QNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTRSKEKLIHANLRMVV 84
+NL +LEE + RL++Q GREPT+ EWA VG+SC LQ+ + G R +EK+ +N R+V+
Sbjct: 263 RNLMKLEEAQRRLEAQCGREPTLPEWAQAVGMSCKELQSSIHMGRRCREKMARSNFRLVI 322
Query: 85 HVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWIRQTIRRALFLHSR 144
HVA+ Y G GL +DL+Q+G GLMK+ EKF P GCRF +YAYWWIRQ I++++F HSR
Sbjct: 323 HVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQAIKKSIFKHSR 382
Query: 145 TIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKLEILLSAARIPLSMQ 204
IRLPE+VY L K+ +A+ EG PT + +AR+ G+T++KL L + R P SMQ
Sbjct: 383 LIRLPESVYARLKKVGKARLECILEGE-QPTNQNVARRAGITIEKLAKLKAKTRKPRSMQ 441
Query: 205 QTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPRERRIIRLRFGIEDG 264
VW++ T+QEIT D I+ PD+ V + +MR+ R L L RE+ II RFGI DG
Sbjct: 442 DQVWSNDAVTFQEITEDPNIDPPDLVVDRIMMRQQVREFLGILTTREKEIIEHRFGIYDG 501
Query: 265 YEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAYANLLV 311
K+L IG ++GLSKER+RQL++RALDKLK+ +++ G Y +LL
Sbjct: 502 EPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFHVYLDLLT 548
>Q9AYR7_9BRYO (tr|Q9AYR7) PpSIG2 OS=Physcomitrella patens GN=Sig2 PE=2 SV=1
Length = 579
Score = 286 bits (733), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 130/287 (45%), Positives = 205/287 (71%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
KLLT EE L QIQ+L +LE +K L+ + GR T+ EW+ VG+ A + +L+ G
Sbjct: 275 KLLTAREEVDLSHQIQDLLKLENIKSNLEREIGRNATIGEWSRAVGMEQNAFEARLKKGR 334
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
+K+K++++NLR+VV +AKNY GRG++ QDL+QEGSMGL++ EKF P G +F++YA+W
Sbjct: 335 FAKDKMVNSNLRLVVSIAKNYQGRGMTLQDLIQEGSMGLVRGAEKFDPTKGFKFSTYAHW 394
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ + R++ SRTIRLP ++Y ++ ++ +AK+ +E EE+A +G+TV+K
Sbjct: 395 WIRQAVTRSIADQSRTIRLPIHLYEVISRINKAKRMLVQEHGREARNEEVAELVGLTVEK 454
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNP 249
L+ ++ +A+ P SM++ + D DTT E+ ADT +++P+ + KQLMR+ +L TLNP
Sbjct: 455 LKSVVKSAKAPGSMERPIGKDGDTTLGELVADTDVDSPEDAIVKQLMRQDIEGVLRTLNP 514
Query: 250 RERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQ 296
RER ++RLRFG++DG K+L EIG +F +++ER+RQ+E++A+ KL+Q
Sbjct: 515 REREVLRLRFGLDDGRSKTLEEIGQIFKVTRERIRQIEAKAMRKLRQ 561
>E1C9M6_PHYPA (tr|E1C9M6) Plastid sigma facor SIG2 OS=Physcomitrella patens
subsp. patens GN=PpSig2 PE=4 SV=1
Length = 579
Score = 286 bits (733), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 130/287 (45%), Positives = 205/287 (71%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
KLLT EE L QIQ+L +LE +K L+ + GR T+ EW+ VG+ A + +L+ G
Sbjct: 275 KLLTAREEVDLSHQIQDLLKLENIKSNLEREIGRNATIGEWSRAVGMEQNAFEARLKKGR 334
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
+K+K++++NLR+VV +AKNY GRG++ QDL+QEGSMGL++ EKF P G +F++YA+W
Sbjct: 335 FAKDKMVNSNLRLVVSIAKNYQGRGMTLQDLIQEGSMGLVRGAEKFDPTKGFKFSTYAHW 394
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ + R++ SRTIRLP ++Y ++ ++ +AK+ +E EE+A +G+TV+K
Sbjct: 395 WIRQAVTRSIADQSRTIRLPIHLYEVISRINKAKRMLVQEHGREARNEEVAELVGLTVEK 454
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNP 249
L+ ++ +A+ P SM++ + D DTT E+ ADT +++P+ + KQLMR+ +L TLNP
Sbjct: 455 LKSVVKSAKAPGSMERPIGKDGDTTLGELVADTDVDSPEDAIVKQLMRQDIEGVLRTLNP 514
Query: 250 RERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQ 296
RER ++RLRFG++DG K+L EIG +F +++ER+RQ+E++A+ KL+Q
Sbjct: 515 REREVLRLRFGLDDGRSKTLEEIGQIFKVTRERIRQIEAKAMRKLRQ 561
>K0ISZ8_MARPO (tr|K0ISZ8) Plastid RNA polymerase sigma factor 2 OS=Marchantia
polymorpha GN=Mpsig2 PE=2 SV=1
Length = 615
Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 135/300 (45%), Positives = 211/300 (70%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
KLLT EE +L IQ+L R+E VK L+ Q GREPT+ EWA VG ++L+++++SG
Sbjct: 316 KLLTSSEEIELAEGIQDLLRVESVKNDLREQMGREPTLMEWAKAVGTERHSLESRIKSGQ 375
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
K++++++NLR+VV +AK Y GRG++ QDL+QEGSMGL++ EKF G +F++YA+W
Sbjct: 376 ACKDRMVNSNLRLVVSIAKRYQGRGMTIQDLIQEGSMGLIRGAEKFDHTRGFKFSTYAHW 435
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP +VY LL ++ +AK E P EE+A +G++++K
Sbjct: 436 WIRQAITRAIADQSRTIRLPVHVYELLSRITKAKSMLAAEHGRAPRDEEVAELVGLSIEK 495
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNP 249
L++++ +AR P SM+ V + DTT E+ D I++P+ ++K+L+++ +LHTL+P
Sbjct: 496 LKMVIKSARSPKSMEFPVGKNNDTTLGEVIPDKDIDSPEEAISKRLLKQDLDVVLHTLSP 555
Query: 250 RERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAYANL 309
RER ++RLR+G++DG ++L EIG VF +++ER+RQ+E++AL KL+Q + L Y +L
Sbjct: 556 RERDVLRLRYGLDDGRMRTLEEIGNVFKVTRERIRQIEAKALRKLRQPSRNTALREYLDL 615
>A9RTR4_PHYPA (tr|A9RTR4) Uncharacterized protein OS=Physcomitrella patens subsp.
patens GN=PHYPADRAFT_160930 PE=4 SV=1
Length = 591
Score = 270 bits (690), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 124/289 (42%), Positives = 204/289 (70%), Gaps = 2/289 (0%)
Query: 10 KLLTFEEESQLISQIQ--NLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRS 67
KLLT EE L +IQ +L LE+VK LQ + GREP++ EW+ VG+ A + +++
Sbjct: 287 KLLTASEEVALSRKIQARDLLVLEKVKSDLQREIGREPSIGEWSRAVGMEQNAFELRVKE 346
Query: 68 GTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYA 127
G SK+K++++NLR+VV + KNY GRG++ DL+QEGSMGL++ EKF P G +F++YA
Sbjct: 347 GRYSKDKMVNSNLRLVVSIVKNYQGRGMTLPDLIQEGSMGLIRGAEKFDPDKGFKFSTYA 406
Query: 128 YWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTV 187
+WWIRQ + RA+ SR IRLP ++Y ++ ++ +AKK +E P EE+A +G++V
Sbjct: 407 HWWIRQAVTRAIADQSRIIRLPIHLYEVISRINKAKKMLIQEHGRQPRDEEVAELVGMSV 466
Query: 188 DKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTL 247
+KL+ ++ +A+ P SM + + ++D + E+ AD +E+P+ + +Q++++ +L TL
Sbjct: 467 EKLKFIVKSAKTPSSMDRLIGKEKDQSIGEMIADKDVESPEDDLIRQVLKQDVDGVLCTL 526
Query: 248 NPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQ 296
NPRER ++RLRFG++DG ++L EIGT+F +++ER+RQ+E++A+ KL+Q
Sbjct: 527 NPREREVLRLRFGLDDGQSRTLEEIGTLFKVTRERIRQIEAKAMRKLRQ 575
>B8LQB0_PICSI (tr|B8LQB0) Putative uncharacterized protein OS=Picea sitchensis
PE=2 SV=1
Length = 495
Score = 257 bits (657), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 127/302 (42%), Positives = 199/302 (65%)
Query: 8 TKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRS 67
+ +LLT EE +L IQ+L +L+ ++ + + + G+EPT+A+WA+ +G+ L+ +L
Sbjct: 194 SSRLLTASEEVELSRGIQDLIKLDRIRAKYKEKTGKEPTLAQWAEVIGVDQKTLKMRLEV 253
Query: 68 GTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYA 127
G S +K+I+ NLR+V+ VAKNY RGLS QDL+Q GSMGLM+S EKF G +F++YA
Sbjct: 254 GRDSFDKIINCNLRLVISVAKNYQNRGLSLQDLIQAGSMGLMRSAEKFDYSRGFKFSTYA 313
Query: 128 YWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTV 187
YWWIRQ+I +AL SRTIRLP ++ + ++ A + +E PTKEE+A G+++
Sbjct: 314 YWWIRQSITKALTEQSRTIRLPVHIVESMTRIRTAWRLLYQEHKRDPTKEEVAEVAGISM 373
Query: 188 DKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTL 247
+L + +R+P S+ + V D D + EI ADT E+ + V+K+L ++ +L TL
Sbjct: 374 TRLRHVTRCSRVPTSLDRCVGKDMDEKFSEIVADTNSESTETIVSKELFKKDLDRVLDTL 433
Query: 248 NPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAYA 307
RE++++RLR+G++DG KSL E+G F LS+ERVRQ+E +A+ KL+Q + L Y
Sbjct: 434 TAREKQVVRLRYGLDDGRMKSLHEVGENFSLSRERVRQIEMKAMRKLRQNHRTQHLKHYL 493
Query: 308 NL 309
++
Sbjct: 494 DI 495
>B8LLW6_PICSI (tr|B8LLW6) Putative uncharacterized protein OS=Picea sitchensis
PE=2 SV=1
Length = 592
Score = 257 bits (656), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 127/302 (42%), Positives = 199/302 (65%)
Query: 8 TKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRS 67
+ +LLT EE +L IQ+L +L+ ++ + + + G+EPT+A+WA+ +G+ L+ +L
Sbjct: 291 SSRLLTASEEVELSRGIQDLIKLDRIRAKYKEKTGKEPTLAQWAEVIGVDQKTLKMRLEV 350
Query: 68 GTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYA 127
G S +K+I+ NLR+V+ VAKNY RGLS QDL+Q GSMGLM+S EKF G +F++YA
Sbjct: 351 GRDSFDKIINCNLRLVISVAKNYQNRGLSLQDLIQAGSMGLMRSAEKFDYSRGFKFSTYA 410
Query: 128 YWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTV 187
YWWIRQ+I +AL SRTIRLP ++ + ++ A + +E PTKEE+A G+++
Sbjct: 411 YWWIRQSITKALTEQSRTIRLPVHIVESMTRIRTAWRLLYQEHKRDPTKEEVAEVAGISM 470
Query: 188 DKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTL 247
+L + +R+P S+ + V D D + EI ADT E+ + V+K+L ++ +L TL
Sbjct: 471 TRLRHVTRCSRVPTSLDRCVGKDMDEKFSEIVADTNSESTETIVSKELFKKDLDRVLDTL 530
Query: 248 NPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAYA 307
RE++++RLR+G++DG KSL E+G F LS+ERVRQ+E +A+ KL+Q + L Y
Sbjct: 531 TAREKQVVRLRYGLDDGRMKSLHEVGENFSLSRERVRQIEMKAMRKLRQNHRTQHLKHYL 590
Query: 308 NL 309
++
Sbjct: 591 DI 592
>K8GQ72_9CYAN (tr|K8GQ72) RNA polymerase sigma factor OS=Oscillatoriales
cyanobacterium JSC-12 GN=OsccyDRAFT_1085 PE=3 SV=1
Length = 382
Score = 256 bits (654), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 123/297 (41%), Positives = 200/297 (67%), Gaps = 1/297 (0%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L LE ++ LQ Q R P AEWA+ V ++ A + +L G
Sbjct: 85 RLLRADEEIELARKIADLLELERIRESLQQQLDRTPQDAEWANAVNMTLPAFRHRLHLGR 144
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+K+K++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 145 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 204
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A ++ +T++K
Sbjct: 205 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 264
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNP 249
L + +A++P+S++ + ++D+ + ETP+ VAK L+R N+L TL+P
Sbjct: 265 LRFIAKSAQLPISLETPIGKEEDSRLGDFIESDG-ETPEDQVAKNLLREDLENVLDTLSP 323
Query: 250 RERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
RER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 324 RERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEY 380
>B7KDV7_CYAP7 (tr|B7KDV7) RNA polymerase sigma factor OS=Cyanothece sp. (strain
PCC 7424) GN=PCC7424_1979 PE=3 SV=1
Length = 376
Score = 256 bits (653), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 126/298 (42%), Positives = 204/298 (68%), Gaps = 3/298 (1%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL EEE +L +I +L LE ++ +L+ GR P+ EWA+ VG+ A Q +L G
Sbjct: 79 RLLRAEEEIELARKIADLLELERLREKLRRSLGRYPSDKEWAEQVGMELPAFQRRLYLGR 138
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+K+K++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 139 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 198
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A ++ +T++K
Sbjct: 199 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATRMEMTIEK 258
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLLHTLN 248
L + +A++P+S++ + ++D+ + I AD ETP+ V+K L+R N+L TL+
Sbjct: 259 LRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ETPEDEVSKNLLREDLENVLDTLS 316
Query: 249 PRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
PRER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 317 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEY 374
>E0UHZ3_CYAP2 (tr|E0UHZ3) RNA polymerase sigma factor OS=Cyanothece sp. (strain
PCC 7822) GN=Cyan7822_2551 PE=3 SV=1
Length = 377
Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 126/298 (42%), Positives = 203/298 (68%), Gaps = 3/298 (1%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL EEE +L +I +L LE ++ +L+ GR P+ EWA VG+ A Q +L G
Sbjct: 80 RLLRAEEEIELARKIADLLELERLREKLRRNLGRYPSDKEWAQQVGMELPAFQRRLYLGR 139
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+K+K++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 140 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 199
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A ++ +T++K
Sbjct: 200 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATRMEMTIEK 259
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLLHTLN 248
L + +A++P+S++ + ++D+ + I AD ETP+ V+K L+R N+L TL+
Sbjct: 260 LRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ETPEDEVSKNLLREDLENVLDTLS 317
Query: 249 PRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
PRER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 318 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEY 375
>F5UG89_9CYAN (tr|F5UG89) RNA polymerase sigma factor OS=Microcoleus vaginatus
FGP-2 GN=MicvaDRAFT_3216 PE=3 SV=1
Length = 388
Score = 254 bits (649), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 121/297 (40%), Positives = 202/297 (68%), Gaps = 1/297 (0%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L LE V+ +L ++ REP +EWA+ V ++ A + +L G
Sbjct: 91 RLLRADEEIELARKIADLLELERVREQLLEEYNREPKDSEWANAVDMALPAFRHRLHVGR 150
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+KEK++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 151 RAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 210
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A ++ +T++K
Sbjct: 211 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 270
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNP 249
L + +A++P+S++ + ++D+ + ETP+ V+K L+R ++L TL+P
Sbjct: 271 LRFIAKSAQLPISLETPIGKEEDSRLGDFIESDG-ETPEDQVSKNLLREDLESVLDTLSP 329
Query: 250 RERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
RER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 330 RERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEY 386
>K9ZHC6_ANACC (tr|K9ZHC6) RNA polymerase sigma factor OS=Anabaena cylindrica
(strain ATCC 27899 / PCC 7122) GN=Anacy_2718 PE=3 SV=1
Length = 392
Score = 254 bits (648), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 122/297 (41%), Positives = 198/297 (66%), Gaps = 1/297 (0%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L LE V+ RLQ Q REP EWA+ V L + +L G
Sbjct: 95 RLLRADEEIELARKIADLLELERVRDRLQDQLEREPQFKEWAEAVELPLPTFRYRLHVGR 154
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+K+K++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 155 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 214
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A ++ +T++K
Sbjct: 215 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 274
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNP 249
L + +A++P+S++ + ++D+ + ETP+ V+K L+R +L +L+P
Sbjct: 275 LRFIAKSAQLPISLETPIGKEEDSRLGDFIESDG-ETPEDQVSKNLLREDLEKVLDSLSP 333
Query: 250 RERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
RER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 334 RERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEY 390
>K9VRX0_9CYAN (tr|K9VRX0) RNA polymerase sigma factor OS=Oscillatoria
nigro-viridis PCC 7112 GN=Osc7112_5754 PE=3 SV=1
Length = 388
Score = 253 bits (647), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 121/297 (40%), Positives = 202/297 (68%), Gaps = 1/297 (0%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L LE V+ +L ++ REP +EWA+ V ++ A + +L G
Sbjct: 91 RLLRADEEIELARKIADLLELERVREQLLEEYNREPKDSEWANAVEMALPAFRHRLHVGR 150
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+KEK++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 151 RAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 210
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A ++ +T++K
Sbjct: 211 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 270
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNP 249
L + +A++P+S++ + ++D+ + ETP+ V+K L+R ++L TL+P
Sbjct: 271 LRFIAKSAQLPISLETPIGKEEDSRLGDFIESDG-ETPEDQVSKNLLREDLESVLDTLSP 329
Query: 250 RERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
RER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 330 RERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEY 386
>G6FUP1_9CYAN (tr|G6FUP1) RNA polymerase sigma factor OS=Fischerella sp. JSC-11
GN=FJSC11DRAFT_2588 PE=3 SV=1
Length = 393
Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 122/297 (41%), Positives = 199/297 (67%), Gaps = 1/297 (0%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L LE V+ RLQ Q REP +EWA+ V L + +L G
Sbjct: 96 RLLRADEEIELARKIADLLELERVRDRLQQQLEREPQYSEWAEAVQLPLPQFRHRLHVGR 155
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+K+K++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 156 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 215
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A ++ +T++K
Sbjct: 216 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 275
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNP 249
L + +A++P+S++ + ++D+ + ETP+ V+K L+R +L +L+P
Sbjct: 276 LRFIAKSAQLPISLETPIGKEEDSRLGDFIESDG-ETPEDQVSKNLLREDLEKVLDSLSP 334
Query: 250 RERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
RER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 335 RERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEY 391
>C7QR23_CYAP0 (tr|C7QR23) RNA polymerase sigma factor OS=Cyanothece sp. (strain
PCC 8802) GN=Cyan8802_0150 PE=3 SV=1
Length = 379
Score = 253 bits (646), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 122/298 (40%), Positives = 202/298 (67%), Gaps = 3/298 (1%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL EEE +L +I +L LE ++ ++ GR PT EW+ + + +A Q +L G
Sbjct: 82 RLLRAEEEIELARKIADLLELERIREKMTEHMGRFPTDLEWSQAINMEWHAFQRRLYLGR 141
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
++K+K++H+NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 142 KAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 201
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A ++ +T++K
Sbjct: 202 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATRMEMTIEK 261
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLLHTLN 248
L + +A++P+S++ + ++D+ + I AD E P+ V+K L+R N+L TL+
Sbjct: 262 LRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ENPEDEVSKNLLREDLENVLDTLS 319
Query: 249 PRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
PRER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 320 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEY 377
>B7K1V2_CYAP8 (tr|B7K1V2) RNA polymerase sigma factor OS=Cyanothece sp. (strain
PCC 8801) GN=PCC8801_0154 PE=3 SV=1
Length = 379
Score = 253 bits (646), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 122/298 (40%), Positives = 202/298 (67%), Gaps = 3/298 (1%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL EEE +L +I +L LE ++ ++ GR PT EW+ + + +A Q +L G
Sbjct: 82 RLLRAEEEIELARKIADLLELERIREKMTEHMGRFPTDLEWSQAINMEWHAFQRRLYLGR 141
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
++K+K++H+NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 142 KAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 201
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A ++ +T++K
Sbjct: 202 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATRMEMTIEK 261
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLLHTLN 248
L + +A++P+S++ + ++D+ + I AD E P+ V+K L+R N+L TL+
Sbjct: 262 LRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ENPEDEVSKNLLREDLENVLDTLS 319
Query: 249 PRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
PRER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 320 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEY 377
>A0ZJC3_NODSP (tr|A0ZJC3) RNA polymerase sigma factor OS=Nodularia spumigena
CCY9414 GN=N9414_22328 PE=3 SV=1
Length = 391
Score = 253 bits (646), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 122/297 (41%), Positives = 199/297 (67%), Gaps = 1/297 (0%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L LE V+ RLQ Q REP EWA+ V + A + +L G
Sbjct: 94 RLLRADEEIELARKIADLLELERVRDRLQEQLEREPEYREWAEAVQIPLPAFRYRLHIGR 153
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+K+K++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 154 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 213
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A ++ +T++K
Sbjct: 214 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 273
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNP 249
L + +A++P+S++ + ++D+ + ETP+ V+K L+R +L +L+P
Sbjct: 274 LRFIAKSAQLPISLETPIGKEEDSRLGDFIESDG-ETPEDQVSKNLLREDLEKVLDSLSP 332
Query: 250 RERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
RER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 333 RERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEY 389
>K9WH45_9CYAN (tr|K9WH45) RNA polymerase sigma factor OS=Microcoleus sp. PCC 7113
GN=Mic7113_4030 PE=3 SV=1
Length = 373
Score = 253 bits (646), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 124/298 (41%), Positives = 202/298 (67%), Gaps = 3/298 (1%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L LE ++ RL Q REP +EWA V + A + +L G
Sbjct: 76 RLLRADEEIELARKIADLLELERIRDRLSDQLEREPQDSEWATEVNMPLQAFRHRLYVGR 135
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+K+K++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 136 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 195
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A ++ +T++K
Sbjct: 196 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMGRKPTEEEIADRMEMTIEK 255
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLLHTLN 248
L + +A++P+S++ + ++D+ + I AD ETP+ V+K L+R ++L TL+
Sbjct: 256 LRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ETPEDQVSKNLLREDLESVLDTLS 313
Query: 249 PRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
PRER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 314 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEY 371
>F4XPJ0_9CYAN (tr|F4XPJ0) RNA polymerase sigma factor OS=Moorea producens 3L
GN=LYNGBM3L_34960 PE=3 SV=1
Length = 373
Score = 253 bits (645), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 126/298 (42%), Positives = 201/298 (67%), Gaps = 3/298 (1%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L LE V+ RL Q REP EWA V + A + +L G
Sbjct: 76 RLLRADEEIELARKIADLLELERVRERLSEQLEREPGDREWATEVDMELPAFRYRLHVGR 135
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+KEK++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 136 RAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 195
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A ++ +T++K
Sbjct: 196 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIADRMEMTIEK 255
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLLHTLN 248
L + +A++P+S++ + ++D+ + I AD ETP+ V+K L+R ++L TL+
Sbjct: 256 LRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ETPEDQVSKNLLREDLESVLDTLS 313
Query: 249 PRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
PRER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 314 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEY 371
>K9S7N4_9CYAN (tr|K9S7N4) RNA polymerase sigma factor OS=Geitlerinema sp. PCC
7407 GN=GEI7407_1675 PE=3 SV=1
Length = 381
Score = 253 bits (645), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 122/297 (41%), Positives = 200/297 (67%), Gaps = 1/297 (0%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L LE ++ L Q REPT AEWA V ++ A + +L G
Sbjct: 84 RLLRADEEIELARKIADLLELERIRADLAEQLEREPTDAEWAQKVDMALPAFRHRLHLGR 143
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+K+K++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 144 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 203
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A ++ +T++K
Sbjct: 204 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 263
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNP 249
L + +A++P+S++ + ++D+ + ETP+ V+K L+R ++L TL+P
Sbjct: 264 LRFIAKSAQLPISLETPIGKEEDSRLGDFIESDG-ETPEDQVSKNLLREDLESVLGTLSP 322
Query: 250 RERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
RER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 323 RERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEY 379
>B4WPM0_9SYNE (tr|B4WPM0) RNA polymerase sigma factor OS=Synechococcus sp. PCC
7335 GN=S7335_5088 PE=3 SV=1
Length = 404
Score = 252 bits (644), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 122/298 (40%), Positives = 202/298 (67%), Gaps = 3/298 (1%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL EEE +L +I +L LE ++ + Q EPT A+WA+ V + A + +L G
Sbjct: 107 RLLRAEEEIELARKIADLLELERIRDEIDDQLDDEPTDADWANAVDMPLPAFRRRLYQGR 166
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+K+K++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 167 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 226
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A ++ +T++K
Sbjct: 227 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQELGRKPTEEEIATRMEMTIEK 286
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLLHTLN 248
L + +A++P+S++ + ++D+ + I +D ETP+ V+K L+R ++L TL+
Sbjct: 287 LRFIAKSAQLPISLETPIGKEEDSRLGDFIESDG--ETPEDEVSKSLLREDLESVLSTLS 344
Query: 249 PRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
PRER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 345 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEY 402
>K9T849_9CYAN (tr|K9T849) RNA polymerase sigma factor OS=Pleurocapsa sp. PCC 7327
GN=Ple7327_3395 PE=3 SV=1
Length = 374
Score = 252 bits (644), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 125/298 (41%), Positives = 202/298 (67%), Gaps = 3/298 (1%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL EEE +L +I +L LE + +L+ + GR P EWA+ V + A Q +L G
Sbjct: 77 RLLRAEEEIELARKIADLLELERIYEQLRKRLGRFPNNREWAEAVEMELPAFQRRLYLGR 136
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+K+K++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 137 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 196
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A ++ +T++K
Sbjct: 197 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATRMEMTIEK 256
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLLHTLN 248
L + +A++P+S++ + ++D+ + I AD ETP+ V+K L+R N+L TL+
Sbjct: 257 LRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ETPEDEVSKNLLREDLENVLDTLS 314
Query: 249 PRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
PRER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 315 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEY 372
>K9Q8G4_9NOSO (tr|K9Q8G4) RNA polymerase sigma factor OS=Nostoc sp. PCC 7107
GN=Nos7107_0427 PE=3 SV=1
Length = 391
Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 121/297 (40%), Positives = 199/297 (67%), Gaps = 1/297 (0%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L LE V+ RL Q R+P +EWA+ V L A + +L G
Sbjct: 94 RLLRADEEIELARKIADLLELERVRERLSEQLDRDPRDSEWAEAVQLPLPAFRYRLHVGR 153
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+K+K++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 154 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 213
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A ++ +T++K
Sbjct: 214 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 273
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNP 249
L + +A++P+S++ + ++D+ + ETP+ V+K L+R +L +L+P
Sbjct: 274 LRFIAKSAQLPISLETPIGKEEDSRLGDFIESDG-ETPEDQVSKNLLREDLEKVLDSLSP 332
Query: 250 RERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
RER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 333 RERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEY 389
>Q9L4T2_NOSP7 (tr|Q9L4T2) RNA polymerase sigma factor OS=Nostoc punctiforme
(strain ATCC 29133 / PCC 73102) GN=sigA PE=3 SV=1
Length = 389
Score = 251 bits (642), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 121/297 (40%), Positives = 199/297 (67%), Gaps = 1/297 (0%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L LE V+ RL Q R+P +EWA+ V L A + +L G
Sbjct: 92 RLLRADEEIELARKIADLLELERVRERLSEQLDRDPRDSEWAEAVQLPLPAFRYRLHVGR 151
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+K+K++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 152 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 211
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A ++ +T++K
Sbjct: 212 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 271
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNP 249
L + +A++P+S++ + ++D+ + ETP+ V+K L+R +L +L+P
Sbjct: 272 LRFIAKSAQLPISLETPIGKEEDSRLGDFIESDG-ETPEDQVSKNLLREDLEKVLDSLSP 330
Query: 250 RERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
RER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 331 RERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEY 387
>A9RTR6_PHYPA (tr|A9RTR6) Uncharacterized protein OS=Physcomitrella patens subsp.
patens GN=PHYPADRAFT_178031 PE=4 SV=1
Length = 583
Score = 251 bits (642), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 112/286 (39%), Positives = 195/286 (68%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
KLL+ EE L +IQ++ +LE+++ LQ GREPT++EW+ V L +L+ +++ G
Sbjct: 282 KLLSASEEVALSRKIQDILKLEKIRAELQRDIGREPTLSEWSQAVSLDQTSLELRVKEGR 341
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
+K+KL+++NLR+VV + KNY GRG++ DL+QEGS+GL++ EKF P+ G +F++YA W
Sbjct: 342 SAKDKLVNSNLRLVVSIVKNYQGRGMTLPDLIQEGSLGLIRGAEKFDPEMGYKFSTYATW 401
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ + RA+ SR IRLP ++Y ++ ++ +AK ++E P EE+A +G++V+K
Sbjct: 402 WIRQAVTRAIADQSRIIRLPVHIYEVISRINKAKMTISQELGRQPRDEEVAAMVGMSVEK 461
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNP 249
L ++ +AR P SM + + D + + E+ AD + +P+ + Q++++ ++L +LNP
Sbjct: 462 LLFIVKSARPPTSMDRPIGKDGEQSLGEMVADKGVGSPEDDIMTQVLKQDIEDVLRSLNP 521
Query: 250 RERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLK 295
ER ++RLRFG+ +L ++G +F +++ER+RQ+E++AL KL+
Sbjct: 522 MEREVLRLRFGLSGAQSMTLKDLGIIFKVTRERIRQIEAKALRKLR 567
>B4W0Y8_9CYAN (tr|B4W0Y8) RNA polymerase sigma factor OS=Coleofasciculus
chthonoplastes PCC 7420 GN=MC7420_8305 PE=3 SV=1
Length = 380
Score = 251 bits (641), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 125/298 (41%), Positives = 201/298 (67%), Gaps = 3/298 (1%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L LE ++ RL Q REP EWA V + A + +L G
Sbjct: 83 RLLRADEEIELARKIADLLELERIRDRLYDQLEREPKEGEWAKEVEMELPAFRQRLFLGR 142
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+KEK++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 143 RAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 202
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A ++ +T++K
Sbjct: 203 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQELGRKPTEEEIADRMEMTIEK 262
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLLHTLN 248
L + +A++P+S++ + ++D+ + I AD ETP+ V+K L+R ++L TL+
Sbjct: 263 LRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ETPEDQVSKNLLREDLESVLDTLS 320
Query: 249 PRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
PRER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 321 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEY 378
>K9PJQ4_9CYAN (tr|K9PJQ4) RNA polymerase sigma factor OS=Calothrix sp. PCC 7507
GN=Cal7507_2774 PE=3 SV=1
Length = 390
Score = 251 bits (640), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 120/297 (40%), Positives = 199/297 (67%), Gaps = 1/297 (0%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L LE V+ +L Q R+P +EWA+ V L A + +L G
Sbjct: 93 RLLRADEEIELARKIADLLELERVREKLSEQLDRDPKDSEWAEAVQLPLPAFRYRLHVGR 152
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+K+K++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 153 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 212
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A ++ +T++K
Sbjct: 213 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 272
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNP 249
L + +A++P+S++ + ++D+ + ETP+ V+K L+R +L +L+P
Sbjct: 273 LRFIAKSAQLPISLETPIGKEEDSRLGDFIESDG-ETPEDQVSKNLLREDLEKVLDSLSP 331
Query: 250 RERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
RER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 332 RERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEY 388
>K9YFR5_HALP7 (tr|K9YFR5) RNA polymerase sigma factor OS=Halothece sp. (strain
PCC 7418) GN=PCC7418_3695 PE=3 SV=1
Length = 394
Score = 251 bits (640), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 124/298 (41%), Positives = 201/298 (67%), Gaps = 3/298 (1%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L LE + L++ G EPT EWA+ V + + +L G
Sbjct: 96 RLLRADEEIELARKIADLLELERKRTELEATIGCEPTDEEWAEEVDMPLQKFRRRLMLGR 155
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+KEK++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 156 RAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 215
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A ++ +T++K
Sbjct: 216 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQELGRKPTEEEIAERMEMTIEK 275
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLLHTLN 248
L + +A++P+S++ + ++D+ + I AD ETP+ V+K L+R ++L TL+
Sbjct: 276 LRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ETPEDEVSKSLLREDLEDVLDTLS 333
Query: 249 PRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
PRER ++RLR+G+EDG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 334 PRERDVLRLRYGLEDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEY 391
>K9TM07_9CYAN (tr|K9TM07) RNA polymerase sigma factor OS=Oscillatoria acuminata
PCC 6304 GN=Oscil6304_3894 PE=3 SV=1
Length = 387
Score = 251 bits (640), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 119/287 (41%), Positives = 195/287 (67%), Gaps = 1/287 (0%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L LE ++ L REP AEWAD V +S + +L G
Sbjct: 90 RLLRADEEIELARKIADLLELERIREHLCDHLHREPYDAEWADAVKMSVGQFRHRLHCGR 149
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+K+K++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 150 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 209
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A ++ +T++K
Sbjct: 210 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 269
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNP 249
L + +A++P+S++ + ++D+ + ETP+ V+K L+R ++L TL+P
Sbjct: 270 LRFIAKSAQLPISLETPIGKEEDSRLGDFIESDG-ETPEDQVSKNLLREDLESVLDTLSP 328
Query: 250 RERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQ 296
RER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+
Sbjct: 329 RERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRH 375
>K9XHA2_9CHRO (tr|K9XHA2) RNA polymerase sigma factor OS=Gloeocapsa sp. PCC 7428
GN=Glo7428_2515 PE=3 SV=1
Length = 390
Score = 250 bits (639), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 121/297 (40%), Positives = 198/297 (66%), Gaps = 1/297 (0%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I L +E V+ RL Q REP +EWA+ V LS + +L G
Sbjct: 93 RLLRADEEIELARKIAELLEMERVRERLLEQLDREPQDSEWAEAVQLSLPTFRYRLHVGR 152
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+K+K++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 153 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 212
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A ++ +T++K
Sbjct: 213 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 272
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNP 249
L + +A++P+S++ + ++D+ + ETP+ V+K L+R +L +L+P
Sbjct: 273 LRFIAKSAQLPISLETPIGKEEDSRLGDFIESDG-ETPEDQVSKSLLREDLEKVLDSLSP 331
Query: 250 RERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
RER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 332 RERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEY 388
>D7E0K7_NOSA0 (tr|D7E0K7) RNA polymerase sigma factor OS=Nostoc azollae (strain
0708) GN=Aazo_2817 PE=3 SV=1
Length = 390
Score = 250 bits (639), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 121/297 (40%), Positives = 197/297 (66%), Gaps = 1/297 (0%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L LE V+ RL Q REP EWA+ V L + +L G
Sbjct: 93 RLLRADEEIELARKIADLLELERVRDRLYEQLEREPQFKEWAEAVQLPLPTFRYRLHVGR 152
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+K+K++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 153 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 212
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A ++ +T++K
Sbjct: 213 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 272
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNP 249
L + +A++P+S++ + ++D+ + ETP+ V+K L+R +L +L+P
Sbjct: 273 LRFIAKSAQLPISLETPIGKEEDSRLGDFIESDG-ETPEDQVSKNLLREDLEKVLDSLSP 331
Query: 250 RERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
RER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 332 RERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEY 388
>K9XY46_STAC7 (tr|K9XY46) RNA polymerase sigma factor OS=Stanieria cyanosphaera
(strain ATCC 29371 / PCC 7437) GN=Sta7437_3976 PE=3 SV=1
Length = 372
Score = 250 bits (639), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 123/298 (41%), Positives = 202/298 (67%), Gaps = 3/298 (1%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL EEE +L +I +L LE ++ R+ + R P+ AEWA+ V + + +L G
Sbjct: 75 RLLRAEEEIELARKIADLLELERIRERMADRLERYPSDAEWAEEVNMRLPEFRRRLFYGR 134
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+K+K++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 135 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 194
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A ++ +T++K
Sbjct: 195 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 254
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLLHTLN 248
L + +A++P+S++ + ++D+ + I AD ETP+ V+K L+R N+L TL+
Sbjct: 255 LRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ETPEDQVSKSLLREDLENVLDTLS 312
Query: 249 PRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
PRER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 313 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEY 370
>K9QTZ2_NOSS7 (tr|K9QTZ2) RNA polymerase sigma factor OS=Nostoc sp. (strain ATCC
29411 / PCC 7524) GN=Nos7524_2732 PE=3 SV=1
Length = 390
Score = 250 bits (638), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 120/297 (40%), Positives = 199/297 (67%), Gaps = 1/297 (0%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L LE ++ RL Q R+P +EWA+ V L A + +L G
Sbjct: 93 RLLRADEEIELARKIADLLELERIRERLSEQLERDPHDSEWAEAVQLPLPAFRYRLHLGR 152
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+K+K++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 153 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 212
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A ++ +T++K
Sbjct: 213 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 272
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNP 249
L + +A++P+S++ + ++D+ + ETP+ V+K L+R +L +L+P
Sbjct: 273 LRFIAKSAQLPISLETPIGKEEDSRLGDFIESDG-ETPEDQVSKNLLREDLEKVLDSLSP 331
Query: 250 RERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
RER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 332 RERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEY 388
>K9Q1H6_9CYAN (tr|K9Q1H6) RNA polymerase sigma factor OS=Leptolyngbya sp. PCC
7376 GN=Lepto7376_2997 PE=3 SV=1
Length = 379
Score = 249 bits (637), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 123/298 (41%), Positives = 201/298 (67%), Gaps = 3/298 (1%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL EEE +L +I +L LE ++ +L+ R PT EWA+ G+ + +L G
Sbjct: 82 RLLRAEEEIELARKIADLLELERMREQLEEHESRVPTDKEWAEAAGMPLKDFRRRLFHGR 141
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+K+K++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 142 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 201
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A ++ +T++K
Sbjct: 202 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQELGRKPTEEEIATRMEMTIEK 261
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLLHTLN 248
L + +A++P+S++ + ++D+ + I AD ETP+ V+K L+R N+L TL+
Sbjct: 262 LRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ETPEDQVSKSLLREDLENVLDTLS 319
Query: 249 PRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
PRER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 320 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEY 377
>Q3MDA3_ANAVT (tr|Q3MDA3) RNA polymerase sigma factor OS=Anabaena variabilis
(strain ATCC 29413 / PCC 7937) GN=Ava_1410 PE=3 SV=1
Length = 390
Score = 249 bits (636), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 120/297 (40%), Positives = 199/297 (67%), Gaps = 1/297 (0%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L LE V+ RL + R+P +EWA+ V L A + +L G
Sbjct: 93 RLLRADEEIELARKIADLLELERVRERLSEKLERDPRDSEWAEAVQLPLPAFRYRLHIGR 152
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+K+K++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 153 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 212
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A ++ +T++K
Sbjct: 213 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 272
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNP 249
L + +A++P+S++ + ++D+ + ETP+ V+K L+R +L +L+P
Sbjct: 273 LRFIAKSAQLPISLETPIGKEEDSRLGDFIESDG-ETPEDQVSKNLLREDLEKVLDSLSP 331
Query: 250 RERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
RER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 332 RERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEY 388
>M1WSP5_9NOST (tr|M1WSP5) RNA polymerase sigma factor OS=Richelia intracellularis
HH01 GN=RINTHH_14140 PE=3 SV=1
Length = 390
Score = 249 bits (636), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 119/297 (40%), Positives = 198/297 (66%), Gaps = 1/297 (0%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L +E V+ RL Q REP +EWA+ V + + +L G
Sbjct: 93 RLLRADEEIELARKIADLLEMERVRDRLYDQLAREPKYSEWAEAVKIPLPQFRYRLHIGR 152
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+K+K++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 153 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 212
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A ++ +T++K
Sbjct: 213 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 272
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNP 249
L + +A++P+S++ + ++D+ + ETP+ V+K L+R +L +L+P
Sbjct: 273 LRFIAKSAQLPISLETPIGKEEDSRLGDFIESDG-ETPEDQVSKGLLREDLEKVLDSLSP 331
Query: 250 RERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
RER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 332 RERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEY 388
>Q7U5C4_SYNPX (tr|Q7U5C4) RNA polymerase sigma factor OS=Synechococcus sp.
(strain WH8102) GN=sigA PE=3 SV=1
Length = 471
Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 123/287 (42%), Positives = 196/287 (68%), Gaps = 3/287 (1%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L LEE+ + +S GREP EWA V + + +L G
Sbjct: 174 RLLRPDEEIELARKIADLLHLEELAAQFESDNGREPDKKEWAALVEMPLIRFRRRLMLGR 233
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+KEK++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 234 RAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 293
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A + +T++K
Sbjct: 294 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEK 353
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLLHTLN 248
L + +A++P+S++ + ++D+ + I AD IE P+ VAK L+R +L TL+
Sbjct: 354 LRFIAKSAQLPISLETPIGKEEDSRLGDFIEAD--IENPEQDVAKNLLREDLEGVLATLS 411
Query: 249 PRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLK 295
PRER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+
Sbjct: 412 PRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 458
>D8G4S3_9CYAN (tr|D8G4S3) RNA polymerase sigma factor OS=Oscillatoria sp. PCC
6506 GN=OSCI_3480020 PE=3 SV=1
Length = 391
Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 119/297 (40%), Positives = 200/297 (67%), Gaps = 1/297 (0%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L LE ++ +L + R+P EWA+ VG+ A + +L G
Sbjct: 94 RLLRADEEIELARKIADLLELERIREQLCEELERDPKDNEWANAVGMPLPAFRHRLHLGR 153
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+K+K++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 154 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 213
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A ++ +T++K
Sbjct: 214 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 273
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNP 249
L + +A++P+S++ + ++D+ + ETP+ V+K L+R ++L TL+P
Sbjct: 274 LRFIAKSAQLPISLETPIGKEEDSRLGDFIESDG-ETPEDQVSKNLLREDLESVLDTLSP 332
Query: 250 RERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
RER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 333 RERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEY 389
>Q05YJ7_9SYNE (tr|Q05YJ7) RNA polymerase sigma factor OS=Synechococcus sp. BL107
GN=BL107_10222 PE=3 SV=1
Length = 451
Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 123/287 (42%), Positives = 196/287 (68%), Gaps = 3/287 (1%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L LEE+ + +S GREP EWA V + + +L G
Sbjct: 154 RLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDKKEWAALVEMPLIRFRRRLMLGR 213
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+KEK++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 214 RAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 273
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A + +T++K
Sbjct: 274 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEK 333
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLLHTLN 248
L + +A++P+S++ + ++D+ + I AD IE P+ VAK L+R +L TL+
Sbjct: 334 LRFIAKSAQLPISLETPIGKEEDSRLGDFIEAD--IENPEQDVAKNLLREDLEGVLATLS 391
Query: 249 PRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLK 295
PRER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+
Sbjct: 392 PRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 438
>Q3AWQ6_SYNS9 (tr|Q3AWQ6) RNA polymerase sigma factor OS=Synechococcus sp.
(strain CC9902) GN=Syncc9902_1678 PE=3 SV=1
Length = 451
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 123/287 (42%), Positives = 196/287 (68%), Gaps = 3/287 (1%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L LEE+ + +S GREP EWA V + + +L G
Sbjct: 154 RLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDKKEWAALVEMPLIRFRRRLMLGR 213
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+KEK++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 214 RAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 273
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A + +T++K
Sbjct: 274 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEK 333
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLLHTLN 248
L + +A++P+S++ + ++D+ + I AD IE P+ VAK L+R +L TL+
Sbjct: 334 LRFIAKSAQLPISLETPIGKEEDSRLGDFIEAD--IENPEQDVAKNLLREDLEGVLATLS 391
Query: 249 PRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLK 295
PRER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+
Sbjct: 392 PRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 438
>K9X1I3_9NOST (tr|K9X1I3) RNA polymerase sigma factor OS=Cylindrospermum stagnale
PCC 7417 GN=Cylst_3438 PE=3 SV=1
Length = 390
Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 120/297 (40%), Positives = 198/297 (66%), Gaps = 1/297 (0%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L LE V+ RL + R+P +EWA V L A + +L G
Sbjct: 93 RLLRADEEIELARKIADLLELERVRERLSERLERDPKDSEWAAEVQLPLPAFRYRLHVGR 152
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+K+K++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 153 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 212
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A ++ +T++K
Sbjct: 213 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 272
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNP 249
L + +A++P+S++ + ++D+ + ETP+ V+K L+R +L +L+P
Sbjct: 273 LRFIAKSAQLPISLETPIGKEEDSRLGDFIESDG-ETPEDQVSKNLLREDLEKVLDSLSP 331
Query: 250 RERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
RER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 332 RERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEY 388
>K9TYL7_9CYAN (tr|K9TYL7) RNA polymerase sigma factor OS=Chroococcidiopsis
thermalis PCC 7203 GN=Chro_1963 PE=3 SV=1
Length = 392
Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 118/297 (39%), Positives = 199/297 (67%), Gaps = 1/297 (0%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L LE ++ +L + REP +EWA+ V + A + +L G
Sbjct: 95 RLLRADEEIELARKIADLLELERIREKLSDRLDREPQDSEWAEAVKQNLPAFRYRLHVGR 154
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+K+K++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 155 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 214
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A ++ +T++K
Sbjct: 215 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 274
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNP 249
L + +A++P+S++ + ++D+ + ETP+ V+K L+R +L +L+P
Sbjct: 275 LRFIAKSAQLPISLETPIGKEEDSRLGDFIESDG-ETPEDQVSKNLLREDLEKVLDSLSP 333
Query: 250 RERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
RER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 334 RERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEY 390
>D0CLH5_9SYNE (tr|D0CLH5) RNA polymerase sigma factor OS=Synechococcus sp. WH
8109 GN=SH8109_2432 PE=3 SV=1
Length = 458
Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 123/287 (42%), Positives = 196/287 (68%), Gaps = 3/287 (1%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L LEE+ + +S GREP EWA V + + +L G
Sbjct: 161 RLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDNKEWAALVEMPLIRFRRRLMLGR 220
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+KEK++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 221 RAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 280
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A + +T++K
Sbjct: 281 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEK 340
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLLHTLN 248
L + +A++P+S++ + ++D+ + I AD IE P+ VAK L+R +L TL+
Sbjct: 341 LRFIAKSAQLPISLETPIGKEEDSRLGDFIEAD--IENPEQDVAKNLLREDLEGVLATLS 398
Query: 249 PRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLK 295
PRER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+
Sbjct: 399 PRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 445
>Q3ALS7_SYNSC (tr|Q3ALS7) RNA polymerase sigma factor OS=Synechococcus sp.
(strain CC9605) GN=Syncc9605_0681 PE=3 SV=1
Length = 435
Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 125/298 (41%), Positives = 199/298 (66%), Gaps = 3/298 (1%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L LEE+ + +S GREP EWA V + + +L G
Sbjct: 138 RLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDNKEWAALVEMPLIRFRRRLMLGR 197
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+KEK++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 198 RAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 257
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A + +T++K
Sbjct: 258 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEK 317
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLLHTLN 248
L + +A++P+S++ + ++D+ + I AD IE P+ VAK L+R +L TL+
Sbjct: 318 LRFIAKSAQLPISLETPIGKEEDSRLGDFIEAD--IENPEQDVAKNLLREDLEGVLATLS 375
Query: 249 PRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
PRER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 376 PRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEY 433
>K9R7S3_9CYAN (tr|K9R7S3) RNA polymerase sigma factor OS=Rivularia sp. PCC 7116
GN=Riv7116_1014 PE=3 SV=1
Length = 389
Score = 247 bits (630), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 120/297 (40%), Positives = 197/297 (66%), Gaps = 1/297 (0%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L LE V RL Q R+P +EWA+ V L + +L G
Sbjct: 92 RLLRADEEIELARKIADLLELERVGDRLVQQLERQPQESEWAEAVQLPLQKFRYRLHVGR 151
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+K+K++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 152 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 211
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A ++ +T++K
Sbjct: 212 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 271
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNP 249
L + +A++P+S++ + ++D+ + ETP+ V+K L+R +L +L+P
Sbjct: 272 LRFIAKSAQLPISLETPIGKEEDSRLGDFIESDG-ETPEDQVSKSLLREDLEKVLDSLSP 330
Query: 250 RERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
RER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 331 RERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEY 387
>D4TQC8_9NOST (tr|D4TQC8) RNA polymerase sigma factor OS=Raphidiopsis brookii D9
GN=CRD_00598 PE=3 SV=1
Length = 390
Score = 247 bits (630), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 120/297 (40%), Positives = 195/297 (65%), Gaps = 1/297 (0%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L LE V+ L Q REP EWA+ V L + +L G
Sbjct: 93 RLLRADEEIELARKIADLLELERVRDDLYEQLEREPEFREWAEAVKLPLPTFRYRLHVGR 152
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+K+K++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 153 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 212
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A ++ +T++K
Sbjct: 213 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 272
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNP 249
L + +A++P+S++ + ++D+ + ETP+ V+K L+R +L +L P
Sbjct: 273 LRFIAKSAQLPISLETPIGKEEDSRLGDFIESDG-ETPEDQVSKSLLREDLERVLDSLGP 331
Query: 250 RERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
RER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 332 RERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEY 388
>K9W354_9CYAN (tr|K9W354) RNA polymerase sigma factor OS=Crinalium epipsammum PCC
9333 GN=Cri9333_3816 PE=3 SV=1
Length = 383
Score = 247 bits (630), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 123/298 (41%), Positives = 202/298 (67%), Gaps = 3/298 (1%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I L +LE V +L++Q REP +EWA V + + +L G
Sbjct: 86 RLLRADEEIELARKIAELLQLERVYEQLKAQLDREPKDSEWALAVEMPLPQFRHRLYLGR 145
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+K+K++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 146 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 205
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A ++ +T++K
Sbjct: 206 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 265
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLLHTLN 248
L + +A++P+S++ + ++D+ + I AD ETP+ V+K L+R ++L TL+
Sbjct: 266 LRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ETPEDEVSKNLLREDLESVLDTLS 323
Query: 249 PRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
PRER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 324 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEY 381
>K9V2E9_9CYAN (tr|K9V2E9) RNA polymerase sigma factor OS=Calothrix sp. PCC 6303
GN=Cal6303_3070 PE=3 SV=1
Length = 389
Score = 246 bits (629), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 117/297 (39%), Positives = 198/297 (66%), Gaps = 1/297 (0%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L LE ++ +L Q R+P +EWA+ V + + +L G
Sbjct: 92 RLLRADEEIELARKIADLLELERIREKLSQQLDRDPKDSEWAEAVQVPLPQFRYRLHIGR 151
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+K+K++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 152 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 211
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A ++ +T++K
Sbjct: 212 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 271
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNP 249
L + +A++P+S++ + ++D+ + ETP+ V+K L+R +L +L+P
Sbjct: 272 LRFIAKSAQLPISLETPIGKEEDSRLGDFIESDG-ETPEDQVSKNLLREDLEKVLDSLSP 330
Query: 250 RERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
RER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 331 RERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEY 387
>Q10UV2_TRIEI (tr|Q10UV2) RNA polymerase sigma factor OS=Trichodesmium erythraeum
(strain IMS101) GN=Tery_5068 PE=3 SV=1
Length = 386
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 118/297 (39%), Positives = 198/297 (66%), Gaps = 1/297 (0%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L LE ++ L REP ++EWA+ V + + +L G
Sbjct: 89 RLLRADEEIELARKIADLLELERIREELIYHLDREPQVSEWANAVDMELPKFKRRLILGR 148
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+KEK++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 149 RAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 208
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A + +T++K
Sbjct: 209 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATSMEMTIEK 268
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNP 249
L + +A++P+S++ + ++D+ + ETP+ V+K L+R ++L++L+P
Sbjct: 269 LRFIAKSAQLPISLETPIGKEEDSRLGDFIESDG-ETPEDEVSKNLLREDLESVLNSLSP 327
Query: 250 RERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
RER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 328 RERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEY 384
>K9YRT3_DACSA (tr|K9YRT3) RNA polymerase sigma factor OS=Dactylococcopsis salina
PCC 8305 GN=Dacsa_0937 PE=3 SV=1
Length = 388
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 125/298 (41%), Positives = 202/298 (67%), Gaps = 3/298 (1%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L LE + L++ G EPT EWA+ VG + + +L G
Sbjct: 90 RLLRADEEIELARKIADLSELERTRTELEATIGCEPTDEEWAEEVGQALPKFRRRLLLGR 149
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+KEK++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 150 RAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 209
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A ++ +T++K
Sbjct: 210 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQELARKPTEEEIAERMEMTIEK 269
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLLHTLN 248
L + +A++P+S++ + ++D+ + I AD ETP+ V+K L+R ++L TL+
Sbjct: 270 LRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ETPEDEVSKSLLREDLEDVLDTLS 327
Query: 249 PRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
PRER ++RLR+G+EDG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 328 PRERDVLRLRYGLEDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEY 385
>A9BEB7_PROM4 (tr|A9BEB7) RNA polymerase sigma factor OS=Prochlorococcus marinus
(strain MIT 9211) GN=P9211_04961 PE=3 SV=1
Length = 425
Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 119/288 (41%), Positives = 198/288 (68%), Gaps = 3/288 (1%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L LEE+ I+ +S+ G P+ EWA V + + +L G
Sbjct: 128 RLLRPDEEIELARKIADLLNLEEIAIQFESENGHYPSKKEWAALVEMPVIRFRRRLMLGR 187
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+KEK++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 188 RAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 247
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E P++EE+A + +T++K
Sbjct: 248 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAESMEMTIEK 307
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLLHTLN 248
L + +A++P+S++ + ++D+ + I +D+ E P++ VAK L+R +L TL+
Sbjct: 308 LRFIAKSAQLPISLETPIGKEEDSRLGDFIESDS--ENPELDVAKTLLREDLEGVLATLS 365
Query: 249 PRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQ 296
PRER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+
Sbjct: 366 PRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 413
>G4FIM1_9SYNE (tr|G4FIM1) RNA polymerase sigma factor OS=Synechococcus sp. WH
8016 GN=Syn8016DRAFT_1273 PE=3 SV=1
Length = 443
Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 121/287 (42%), Positives = 195/287 (67%), Gaps = 3/287 (1%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L LEE+ + +S G+ P EWA V + + +L G
Sbjct: 146 RLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPDTKEWAALVEMPVIRFRRRLMLGR 205
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+KEK++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 206 RAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 265
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A + +T++K
Sbjct: 266 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEK 325
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLLHTLN 248
L + +A++P+S++ + ++D+ + I AD IE P+ VAK L+R +L TL+
Sbjct: 326 LRFIAKSAQLPISLETPIGKEEDSRLGDFIEAD--IENPEQDVAKNLLREDLEGVLATLS 383
Query: 249 PRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLK 295
PRER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+
Sbjct: 384 PRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 430
>Q59965_SYNP2 (tr|Q59965) RNA polymerase sigma factor OS=Synechococcus sp.
(strain ATCC 27264 / PCC 7002 / PR-6) GN=sigA PE=3 SV=1
Length = 375
Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 122/298 (40%), Positives = 199/298 (66%), Gaps = 3/298 (1%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL EEE +L +I +L LE ++ +L R PT EWA+ G+ + +L G
Sbjct: 78 RLLRAEEEIELARKIADLLELERMREQLTEHESRVPTDKEWAEAAGMPLKDFRRRLFHGR 137
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+K+K++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 138 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 197
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A ++ +T++K
Sbjct: 198 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQELGRKPTEEEIAERMEMTIEK 257
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLLHTLN 248
L + +A++P+S++ + ++D+ + I AD ETP+ V+K L+R N+L TL+
Sbjct: 258 LRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ETPEDQVSKSLLREDLENVLDTLS 315
Query: 249 PRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
RER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 316 ARERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEY 373
>A4CRY9_SYNPV (tr|A4CRY9) RNA polymerase sigma factor OS=Synechococcus sp.
(strain WH7805) GN=WH7805_13938 PE=3 SV=1
Length = 447
Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 121/287 (42%), Positives = 195/287 (67%), Gaps = 3/287 (1%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L LEE+ + +S G+ P EWA V + + +L G
Sbjct: 150 RLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPDTKEWAALVEMPVIRFRRRLMLGR 209
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+KEK++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 210 RAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 269
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A + +T++K
Sbjct: 270 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEK 329
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLLHTLN 248
L + +A++P+S++ + ++D+ + I AD IE P+ VAK L+R +L TL+
Sbjct: 330 LRFIAKSAQLPISLETPIGKEEDSRLGDFIEAD--IENPEQDVAKNLLREDLEGVLATLS 387
Query: 249 PRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLK 295
PRER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+
Sbjct: 388 PRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 434
>D4TFK7_9NOST (tr|D4TFK7) RNA polymerase sigma factor OS=Cylindrospermopsis
raciborskii CS-505 GN=CRC_01163 PE=3 SV=1
Length = 390
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 119/297 (40%), Positives = 195/297 (65%), Gaps = 1/297 (0%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L LE V+ L Q REP EWA+ V L + +L G
Sbjct: 93 RLLRADEEIELARKIADLLELERVRDDLYEQLEREPEFREWAEAVKLPLPTFRYRLHVGR 152
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+K+K++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 153 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 212
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A ++ +T++K
Sbjct: 213 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 272
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNP 249
L + +A++P+S++ + ++D+ + ETP+ V+K L+R +L +L P
Sbjct: 273 LRFIAKSAQLPISLETPIGKEEDSRLGDFIESDG-ETPEDQVSKSLLREDLERVLDSLGP 331
Query: 250 RERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
RER ++RLR+G+++G K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 332 RERDVLRLRYGLDNGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEY 388
>A5GJC2_SYNPW (tr|A5GJC2) RNA polymerase sigma factor OS=Synechococcus sp.
(strain WH7803) GN=rpoD PE=3 SV=1
Length = 450
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 121/288 (42%), Positives = 195/288 (67%), Gaps = 3/288 (1%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L LEE+ + +S G+ P EWA V + + +L G
Sbjct: 153 RLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPDTKEWAALVEMPVIRFRRRLMLGR 212
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+KEK++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 213 RAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 272
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A + +T++K
Sbjct: 273 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEK 332
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLLHTLN 248
L + +A++P+S++ + ++D+ + I AD IE P+ VAK L+R +L TL+
Sbjct: 333 LRFIAKSAQLPISLETPIGKEEDSRLGDFIEAD--IENPEQDVAKNLLREDLEGVLATLS 390
Query: 249 PRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQ 296
PRER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+
Sbjct: 391 PRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 438
>F2HHX7_9CRYP (tr|F2HHX7) RNA-polymerase sigma factor OS=Cryptomonas paramecium
GN=rpoD PE=4 SV=1
Length = 414
Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 123/292 (42%), Positives = 195/292 (66%), Gaps = 1/292 (0%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLS-CYALQTQLRSG 68
KLL EEE QL +I L + E +K+ L+ + GREPT EW+ +S +T L +
Sbjct: 97 KLLKPEEEIQLAREISQLLQWEHIKVFLKEKLGREPTALEWSAACKISDVQKFKTVLYNS 156
Query: 69 TRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 128
++KE++I ANLR+VV +AK Y RG+S QDL+QEGS+GL+++ EKF + G +F++YA
Sbjct: 157 RKAKERMIAANLRLVVSIAKRYSNRGMSLQDLVQEGSLGLIRATEKFDSEKGFKFSTYAT 216
Query: 129 WWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVD 188
WWI+Q++ RA+ HSRTIRLP ++Y L + + + E PT+EE+A K+ VTVD
Sbjct: 217 WWIKQSVSRAIADHSRTIRLPVHLYDTLSAIKKTTRILTIELGRSPTEEEIACKMDVTVD 276
Query: 189 KLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLN 248
KL +L +A+ LS+++ + D DT + E+PD +V K ++R R+++++L+
Sbjct: 277 KLRSVLQSAQPTLSLEKPIKNDGDTAQLSDFIEADQESPDEHVEKSMLRDDLRDVINSLS 336
Query: 249 PRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLAS 300
RER +IR+R+G++DG ++L EIG +F +++ERVRQ+E++A+ KL+Q S
Sbjct: 337 LRERDVIRMRYGLDDGKIRTLEEIGQIFSVTRERVRQIEAKAIRKLRQPYRS 388
>L8LB48_9CYAN (tr|L8LB48) RNA polymerase sigma factor OS=Leptolyngbya sp. PCC
6406 GN=Lep6406DRAFT_00037560 PE=3 SV=1
Length = 372
Score = 244 bits (623), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 120/297 (40%), Positives = 196/297 (65%), Gaps = 1/297 (0%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL EEE +L +I +L LE V +L R+P AEWA+ V + Q +L G
Sbjct: 75 RLLRAEEEIELARKIADLLELERVYDQLAETLQRDPQDAEWAEAVDMPLPKFQRRLHIGR 134
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+K+K++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 135 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 194
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A ++ +T++K
Sbjct: 195 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 254
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNP 249
L + +A++P+S++ + ++D+ + ETP+ V+K L+R ++L TL+
Sbjct: 255 LRFIAKSAQLPISLETPIGKEEDSRLGDFIESDG-ETPEDEVSKSLLREDLESVLGTLSA 313
Query: 250 RERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
RER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 314 RERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEY 370
>M0STE2_MUSAM (tr|M0STE2) Uncharacterized protein OS=Musa acuminata subsp.
malaccensis PE=4 SV=1
Length = 201
Score = 244 bits (623), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 116/204 (56%), Positives = 160/204 (78%), Gaps = 4/204 (1%)
Query: 109 MKSVEKFKPQAGCRFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNR 168
MKS+EKFKP AGCRF +Y+YWWIRQ+IR+A+F +SR IRLP+N+Y L ++ A++ +
Sbjct: 1 MKSLEKFKPNAGCRFPTYSYWWIRQSIRKAIFQNSRIIRLPDNIYAFLKEIKYARRLCIQ 60
Query: 169 EGNVHPTKEELARKIGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPD 228
EG + PT EE+A+++G+TV KLE LL R P+S+Q+ W Q+ T+QEITAD +E PD
Sbjct: 61 EGRL-PTNEEIAKRVGITVKKLEKLLLYFRDPVSIQEHAW--QNVTFQEITADPGVEIPD 117
Query: 229 VYVAKQLMRRHARNLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLES 288
+ VAKQLMR+H R++L TL P+ER+II+ RFG+ + +K+LSEIG ++GLS ER+RQLES
Sbjct: 118 LIVAKQLMRQHVRDILKTLKPKERKIIQYRFGMHENKKKTLSEIGDIYGLSNERIRQLES 177
Query: 289 RALDKLKQ-CLASHGLDAYANLLV 311
RAL+KLK+ CL + GL AY +LLV
Sbjct: 178 RALNKLKEWCLTTQGLKAYRDLLV 201
>Q0I8I7_SYNS3 (tr|Q0I8I7) RNA polymerase sigma factor OS=Synechococcus sp.
(strain CC9311) GN=rpoD PE=3 SV=1
Length = 440
Score = 244 bits (622), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 123/298 (41%), Positives = 198/298 (66%), Gaps = 3/298 (1%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L LEE+ + +S G+ P EWA V + + +L G
Sbjct: 143 RLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPETKEWAALVEMPVIRFRRRLMLGR 202
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+KEK++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 203 RAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 262
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A + +T++K
Sbjct: 263 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEK 322
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLLHTLN 248
L + +A++P+S++ + ++D+ + I AD IE P+ VAK L+R +L TL+
Sbjct: 323 LRFIAKSAQLPISLETPIGKEEDSRLGDFIEAD--IENPEQDVAKNLLREDLEGVLATLS 380
Query: 249 PRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
PRER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 381 PRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEY 438
>B9SDA3_RICCO (tr|B9SDA3) RNA polymerase sigma factor rpoD1, putative OS=Ricinus
communis GN=RCOM_1515490 PE=4 SV=1
Length = 569
Score = 244 bits (622), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 120/299 (40%), Positives = 188/299 (62%)
Query: 8 TKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRS 67
T +LLT EE +L + IQ+L +LE ++ L ++G +PT A+WA G+ L+ ++
Sbjct: 268 TSRLLTASEELELSAAIQDLLKLERLQEELAERYGGQPTFAQWAAAAGVDQRTLRKRINH 327
Query: 68 GTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYA 127
GT K+K+I +N+R+V+ +AKNY G G++ QDL+QEG GL++ EKF G +F++YA
Sbjct: 328 GTICKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 387
Query: 128 YWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTV 187
+WWI+Q +R++L SRTIRLP ++ ++ EA+K E HP EE+A G+++
Sbjct: 388 HWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEVAEAAGLSM 447
Query: 188 DKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTL 247
+L +L + P S+ Q + + D E+ AD ET + + KQ M++ +L+TL
Sbjct: 448 KRLSAVLLTPKAPRSLDQKIGMNMDLKPSEVIADPEAETAEELLMKQFMKQDLEKVLNTL 507
Query: 248 NPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
NPRE +++R RFG+EDG K+L EIG + G+S+ER+RQ+ES A KLK + L Y
Sbjct: 508 NPRETQVVRWRFGLEDGRMKTLQEIGEIMGVSRERIRQIESSAFRKLKNKKRTKQLKQY 566
>L8L5U0_9SYNC (tr|L8L5U0) RNA polymerase sigma factor OS=Synechocystis sp. PCC
7509 GN=Syn7509DRAFT_00044800 PE=3 SV=1
Length = 386
Score = 244 bits (622), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 117/297 (39%), Positives = 198/297 (66%), Gaps = 1/297 (0%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I L ++E V+ +L + R+P +EWA+ V L + + +L G
Sbjct: 89 RLLRADEEIELARKIAELLQMERVREQLCDRLDRDPHDSEWAEAVELPINSFRYRLHVGR 148
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+K+K++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 149 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 208
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A ++ +T++K
Sbjct: 209 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 268
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNP 249
L + +A++P+S++ + ++D+ + ETP+ V+K L+R +L L+P
Sbjct: 269 LRFIAKSAQLPISLETPIGKEEDSRLGDFIESDG-ETPEDQVSKNLLREDLEKVLDGLSP 327
Query: 250 RERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
RER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 328 RERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEY 384
>B5ILG7_9CHRO (tr|B5ILG7) RNA polymerase sigma factor OS=Cyanobium sp. PCC 7001
GN=rpoD_2 PE=3 SV=1
Length = 503
Score = 244 bits (622), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 120/288 (41%), Positives = 195/288 (67%), Gaps = 3/288 (1%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L +LEE+ + ++ G P EWA V + + +L G
Sbjct: 206 RLLRPDEEIELARKIADLLQLEELAAQFEADHGHYPDNKEWAALVDMPLIKFRRRLMLGR 265
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+KEK++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 266 RAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 325
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A + +T++K
Sbjct: 326 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKTLSQEFGRKPTEEEIAESMEMTIEK 385
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLLHTLN 248
L + +A++P+S++ + ++D+ + I AD IE P+ VAK L+R +L TL+
Sbjct: 386 LRFIAKSAQLPISLETPIGKEEDSRLGDFIEAD--IENPEQDVAKNLLREDLEGVLATLS 443
Query: 249 PRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQ 296
PRER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+
Sbjct: 444 PRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 491
>Q46GS6_PROMT (tr|Q46GS6) RNA polymerase sigma factor OS=Prochlorococcus marinus
(strain NATL2A) GN=PMN2A_1829 PE=3 SV=1
Length = 420
Score = 243 bits (620), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 123/301 (40%), Positives = 200/301 (66%), Gaps = 3/301 (0%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L +LEE + +S+ G P++ EWA + + +L G
Sbjct: 121 RLLRPDEEIELARKIADLLQLEEEAAQFESENGHFPSVKEWAVLADMPLARFRRRLMLGR 180
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+KEK++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 181 RAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 240
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A + +T++K
Sbjct: 241 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEK 300
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLLHTLN 248
L + +A++P+S++ + ++D+ + I AD IE P+ VAK L+R +L TL+
Sbjct: 301 LRFIAKSAQLPISLETPIGKEEDSRLGDFIEAD--IENPEQDVAKTLLREDLEGVLATLS 358
Query: 249 PRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAYAN 308
PRER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 359 PRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYIK 418
Query: 309 L 309
L
Sbjct: 419 L 419
>L8M7W7_9CYAN (tr|L8M7W7) RNA polymerase sigma factor OS=Xenococcus sp. PCC 7305
GN=Xen7305DRAFT_00040560 PE=3 SV=1
Length = 380
Score = 243 bits (620), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 122/298 (40%), Positives = 201/298 (67%), Gaps = 3/298 (1%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL EEE +L +I +L LE ++ R++ + RE + AEW V + + +L G
Sbjct: 83 RLLRAEEEIELARKIADLLELERIRERIEDELDREISDAEWGKEVDMELRPFRRRLFLGR 142
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+K+K++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 143 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 202
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A ++ +T++K
Sbjct: 203 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMGRKPTEEEIAERMEMTIEK 262
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLLHTLN 248
L + +A++P+S++ + ++D+ + I AD ETP+ V+K L+R N+L TL+
Sbjct: 263 LRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ETPEDQVSKSLLREDLENVLDTLS 320
Query: 249 PRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
PRER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 321 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEY 378
>D7UB90_VITVI (tr|D7UB90) Putative uncharacterized protein OS=Vitis vinifera
GN=VIT_15s0024g00640 PE=4 SV=1
Length = 575
Score = 243 bits (620), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 121/299 (40%), Positives = 189/299 (63%)
Query: 8 TKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRS 67
T +LLT EE +L IQ+L +LE+++ L+ +FG +PT A+WA G+ L+ +
Sbjct: 274 TSRLLTATEELELSEGIQDLLKLEKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNY 333
Query: 68 GTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYA 127
G R K+K+I +N+R+V+ +AKNY G G++ QDL+QEG GL++ EKF G +F++YA
Sbjct: 334 GIRCKDKMIKSNIRLVISIAKNYQGAGMNIQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 393
Query: 128 YWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTV 187
+WWI+Q +R++L SRTIRLP ++ ++ EA+K E HP EE+A G+++
Sbjct: 394 HWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSM 453
Query: 188 DKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTL 247
+L +L + P S+ Q + +Q+ E+ AD ET + + KQ MR +L++L
Sbjct: 454 KRLNAVLLTPKAPRSLDQKIGINQNLKPSEVIADPDAETAEELLIKQFMREDLEKVLNSL 513
Query: 248 NPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
NPRE+++IR R+G+EDG K+L EIG + G+S+ER+RQ+ES A KLK + L Y
Sbjct: 514 NPREKQVIRWRYGLEDGRTKTLQEIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQY 572
>A2C0V5_PROM1 (tr|A2C0V5) RNA polymerase sigma factor OS=Prochlorococcus marinus
(strain NATL1A) GN=NATL1_05531 PE=3 SV=1
Length = 420
Score = 243 bits (620), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 123/301 (40%), Positives = 200/301 (66%), Gaps = 3/301 (0%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L +LEE + +S+ G P++ EWA + + +L G
Sbjct: 121 RLLRPDEEIELARKIADLLQLEEEAAQFESENGHFPSVKEWAVLADMPLTRFRRRLMLGR 180
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+KEK++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 181 RAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 240
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A + +T++K
Sbjct: 241 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEK 300
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLLHTLN 248
L + +A++P+S++ + ++D+ + I AD IE P+ VAK L+R +L TL+
Sbjct: 301 LRFIAKSAQLPISLETPIGKEEDSRLGDFIEAD--IENPEQDVAKTLLREDLEGVLATLS 358
Query: 249 PRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAYAN 308
PRER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 359 PRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYIK 418
Query: 309 L 309
L
Sbjct: 419 L 419
>A5GSD3_SYNR3 (tr|A5GSD3) RNA polymerase sigma factor OS=Synechococcus sp.
(strain RCC307) GN=rpoD PE=3 SV=1
Length = 401
Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 121/288 (42%), Positives = 194/288 (67%), Gaps = 3/288 (1%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L LEE+ + + G+ P EWA V + + +L G
Sbjct: 104 RLLRPDEEIELARKIADLLHLEELADQYEEDHGKYPDNREWAVLVDMPPIKFRRRLMLGR 163
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+KEK++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 164 RAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 223
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A + +T++K
Sbjct: 224 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEK 283
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLLHTLN 248
L + +A++P+S++ + ++D+ + I AD IE PD VAK L+R +L TL+
Sbjct: 284 LRFIAKSAQLPISLETPIGKEEDSRLGDFIEAD--IENPDQDVAKNLLREDLEGVLATLS 341
Query: 249 PRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQ 296
PRER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+
Sbjct: 342 PRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALLKLRH 389
>K7W4G2_9NOST (tr|K7W4G2) RNA polymerase sigma factor OS=Anabaena sp. 90 GN=sigA
PE=3 SV=1
Length = 391
Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 118/297 (39%), Positives = 195/297 (65%), Gaps = 1/297 (0%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I L LE + RL + R+P +EWA V L + +L G
Sbjct: 94 RLLRADEEIELARKIAELLELERARERLCERLERDPRDSEWAAEVSLPLPTFRYRLHVGR 153
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+K+K++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 154 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 213
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A ++ +T++K
Sbjct: 214 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 273
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNP 249
L + +A++P+S++ + ++D+ + ETP+ V+K L+R +L +L+P
Sbjct: 274 LRFIAKSAQLPISLETPIGKEEDSRLGDFIESDG-ETPEDQVSKNLLREDLEKVLDSLSP 332
Query: 250 RERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
RER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 333 RERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEY 389
>Q7V698_PROMM (tr|Q7V698) RNA polymerase sigma factor OS=Prochlorococcus marinus
(strain MIT 9313) GN=sigA PE=3 SV=1
Length = 461
Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 120/288 (41%), Positives = 193/288 (67%), Gaps = 3/288 (1%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L LEE+ + S G P EWA V + + +L G
Sbjct: 164 RLLRPDEEIELARKIADLLHLEELAEQFNSDHGHYPNNKEWASLVEMPNIKFRRRLMLGR 223
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+KEK++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 224 RAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 283
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A + +T++K
Sbjct: 284 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEK 343
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLLHTLN 248
L + +A++P+S++ + ++D+ + I +DT E P+ VAK L+R +L TL+
Sbjct: 344 LRFIAKSAQLPISLETPIGKEEDSRLGDFIESDT--ENPEQDVAKNLLREDLEGVLATLS 401
Query: 249 PRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQ 296
PRER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+
Sbjct: 402 PRERDVLRLRYGLDDGRMKTLEEIGQIFEVTRERIRQIEAKALRKLRH 449
>B8HPM3_CYAP4 (tr|B8HPM3) RNA polymerase sigma factor OS=Cyanothece sp. (strain
PCC 7425 / ATCC 29141) GN=Cyan7425_1514 PE=3 SV=1
Length = 378
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 117/297 (39%), Positives = 197/297 (66%), Gaps = 1/297 (0%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L LE ++ +L + REP EWA V + + + +L G
Sbjct: 81 RLLRADEEIELARKIADLLELERIREQLYDKLDREPQDQEWAGEVDMPLQSFRHRLHIGR 140
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+K+K++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 141 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 200
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A ++ +T++K
Sbjct: 201 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 260
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNP 249
L + +A++P+S++ + ++D+ + ETP+ V+K L+R +L TL+P
Sbjct: 261 LRFIAKSAQLPISLETPIGKEEDSRLGDFIESDG-ETPEDQVSKNLLREDLETVLCTLSP 319
Query: 250 RERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
RER +++LR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 320 RERDVLKLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLRHPNRNSVLKEY 376
>L8LPU5_9CHRO (tr|L8LPU5) RNA polymerase sigma factor OS=Gloeocapsa sp. PCC 73106
GN=GLO73106DRAFT_00034750 PE=3 SV=1
Length = 376
Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 122/298 (40%), Positives = 199/298 (66%), Gaps = 3/298 (1%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL EEE +L +I +L LE+ + +L + R P EWA V + A + +L G
Sbjct: 79 RLLRAEEEIELARKIADLLELEQKREKLWQELKRIPNDREWAASVEMELPAFRRRLYLGR 138
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+KEK++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 139 RAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 198
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A + +T++K
Sbjct: 199 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMGRKPTEEEIATHMEMTIEK 258
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLLHTLN 248
L + +A++P+S++ + ++D+ + I AD ETP+ V+K L+R ++L +L+
Sbjct: 259 LRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ETPEDDVSKNLLREDLEHVLDSLS 316
Query: 249 PRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
PRER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 317 PRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNSILKEY 374
>A9BK56_HEMAN (tr|A9BK56) RpoD OS=Hemiselmis andersenii GN=HAN_1g44 PE=4 SV=1
Length = 485
Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 119/299 (39%), Positives = 195/299 (65%), Gaps = 1/299 (0%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLS-CYALQTQLRSG 68
+LL EEE QL +I L E VKI L+ + REPT +EW +S + L +
Sbjct: 143 RLLRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEWTAACKVSDVKKFRAILHNA 202
Query: 69 TRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 128
R+KE+++ ANLR+VV +AK Y+ RG+S QDL+QEGS+GL+++ EKF + G +F++YA
Sbjct: 203 RRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEKFDSEKGFKFSTYAT 262
Query: 129 WWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVD 188
WW++Q + RA+ HSRTIRLP ++Y + + + + N E PT+EE+A K+ ++V+
Sbjct: 263 WWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRTLNIEIGRSPTEEEIAEKMDMSVE 322
Query: 189 KLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLN 248
KL +L +A+ LS+++ + D D + + E+P+ +V K ++R N++++L+
Sbjct: 323 KLRSVLQSAQPTLSLERPLKNDDDASQLSDFIEADQESPEEHVEKSMLRDDLENVINSLS 382
Query: 249 PRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAYA 307
PRER ++R+R+G++DG K+L EIG +F +++ERVRQ+E++A+ KL+Q S L Y
Sbjct: 383 PRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIRKLRQPYRSSILRDYV 441
>Q8S9D0_GUITH (tr|Q8S9D0) RNA polymerase sigma factor OS=Guillardia theta GN=sigA
PE=2 SV=1
Length = 490
Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 119/299 (39%), Positives = 196/299 (65%), Gaps = 1/299 (0%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLS-CYALQTQLRSG 68
+LL EEE QL +I L E VKI L+ + REPT +EW +S ++ L +
Sbjct: 143 RLLRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEWTAACKVSDVKKFRSILHNA 202
Query: 69 TRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 128
R+KE+++ ANLR+VV +AK Y+ RG+S QDL+QEGS+GL+++ EKF + G +F++YA
Sbjct: 203 RRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEKFDSEKGFKFSTYAT 262
Query: 129 WWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVD 188
WW++Q + RA+ HSRTIRLP ++Y + + + + N E PT+EE+A K+ ++V+
Sbjct: 263 WWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRTLNIEIGRSPTEEEIAEKMDMSVE 322
Query: 189 KLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLN 248
KL +L +A+ LS+++ + D D + + E+P+ +V K ++R N++++L+
Sbjct: 323 KLRSVLQSAQPTLSLERPLKNDDDASQLSDFIEADQESPEEHVEKSMLRDDLENVINSLS 382
Query: 249 PRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAYA 307
PRER ++R+R+G++DG K+L EIG +F +++ERVRQ+E++A+ KL+Q S L Y
Sbjct: 383 PRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIRKLRQPYRSSILRDYV 441
>Q98RZ3_GUITH (tr|Q98RZ3) RNA-polymerase sigma factor OS=Guillardia theta GN=rpoD
PE=4 SV=1
Length = 460
Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 118/299 (39%), Positives = 198/299 (66%), Gaps = 1/299 (0%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLS-CYALQTQLRSG 68
+LL +EE QL +I L E VKI L+ + REPT +EW +S ++ L +
Sbjct: 126 RLLRPDEEIQLAREISQLLHWEHVKISLRDKLRREPTNSEWTAACKVSDVRKFRSILHNA 185
Query: 69 TRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 128
R+KE+++ ANLR+VV +AK Y+ RG+S QDL+QEGS+GL+++ EKF + G +F++YA
Sbjct: 186 RRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEKFDSEKGFKFSTYAT 245
Query: 129 WWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVD 188
WW++Q + RA+ HSRTIRLP ++Y + + + + N E PT+EE+A+++ ++V+
Sbjct: 246 WWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRNLNIEIGRSPTEEEIAKRMDMSVE 305
Query: 189 KLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLN 248
KL +L +A+ LS+++ + D DT+ + E+P+ +V K ++R N++++L+
Sbjct: 306 KLRNVLQSAQPTLSLERPLKNDDDTSQLSDFIEADQESPEEHVEKSMLRDDLENVINSLS 365
Query: 249 PRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAYA 307
PRER ++R+R+G++DG K+L EIG +F +++ERVRQ+E++A+ KL+Q S L Y
Sbjct: 366 PRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIRKLRQPYRSSILRDYV 424
>B0CDC4_ACAM1 (tr|B0CDC4) RNA polymerase sigma factor OS=Acaryochloris marina
(strain MBIC 11017) GN=rpoD PE=3 SV=1
Length = 371
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 117/297 (39%), Positives = 196/297 (65%), Gaps = 1/297 (0%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L LE + L + REP + EWA V + + +L +G
Sbjct: 74 RLLRADEEIELARKIADLLELERIYDDLFDRLEREPQLQEWALEVDMPLNRFRHRLHAGR 133
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+K+K++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 134 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 193
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A ++ +T++K
Sbjct: 194 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 253
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNP 249
L + +A++P+S++ + ++D+ + ETP+ V+K L+R +L TL+P
Sbjct: 254 LRFIAKSAQLPISLETPIGKEEDSRLGDFIESDG-ETPEDQVSKSLLREDLETVLDTLSP 312
Query: 250 RERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
RER +++LR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 313 RERDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEY 369
>A2C7M0_PROM3 (tr|A2C7M0) RNA polymerase sigma factor OS=Prochlorococcus marinus
(strain MIT 9303) GN=P9303_07291 PE=3 SV=1
Length = 444
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 120/288 (41%), Positives = 193/288 (67%), Gaps = 3/288 (1%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L LEE+ + S G P EWA V + + +L G
Sbjct: 147 RLLRPDEEIELARKIADLLHLEELAEQFNSDHGHYPNNKEWAALVEMPNIKFRRRLMLGR 206
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+KEK++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 207 RAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 266
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A + +T++K
Sbjct: 267 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEK 326
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLLHTLN 248
L + +A++P+S++ + ++D+ + I +DT E P+ VAK L+R +L TL+
Sbjct: 327 LRFIAKSAQLPISLETPIGKEEDSRLGDFIESDT--ENPEQDVAKNLLREDLEGVLATLS 384
Query: 249 PRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQ 296
PRER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+
Sbjct: 385 PRERDVLRLRYGLDDGRMKTLEEIGQIFEVTRERIRQIEAKALRKLRH 432
>J7G2H9_9CRYP (tr|J7G2H9) RNA-polymerase sigma factor OS=Chroomonas
mesostigmatica CCMP1168 GN=rpoD PE=4 SV=1
Length = 485
Score = 240 bits (613), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 119/299 (39%), Positives = 195/299 (65%), Gaps = 1/299 (0%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLS-CYALQTQLRSG 68
+LL EEE QL +I L E VKI L+ + REPT +EW +S + L +
Sbjct: 146 RLLRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEWTAACKVSDVKKFRAILHNA 205
Query: 69 TRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 128
R+KE+++ ANLR+VV +AK Y+ RG+S QDL+QEGS+GL+++ EKF + G +F++YA
Sbjct: 206 RRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEKFDSEKGFKFSTYAT 265
Query: 129 WWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVD 188
WW++Q + RA+ HSRTIRLP ++Y + + + + N E PT+EE+A K+ ++V+
Sbjct: 266 WWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRTLNIEIGRSPTEEEIAEKMDMSVE 325
Query: 189 KLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLN 248
KL +L +A+ LS+++ + D D + + E+P+ +V K ++R N++++L+
Sbjct: 326 KLRSVLQSAQPTLSLERPLKNDDDASQLSDFIEADQESPEEHVEKSMLRDDLENVINSLS 385
Query: 249 PRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAYA 307
PRER ++R+R+G++DG K+L EIG +F +++ERVRQ+E++A+ KL+Q S L Y
Sbjct: 386 PRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIRKLRQPYRSSILRDYV 444
>Q7VD88_PROMA (tr|Q7VD88) RNA polymerase sigma factor OS=Prochlorococcus marinus
(strain SARG / CCMP1375 / SS120) GN=rpoD PE=3 SV=1
Length = 438
Score = 240 bits (613), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 119/288 (41%), Positives = 197/288 (68%), Gaps = 3/288 (1%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L LEE+ I+ +S+ G PT EWA V + + +L
Sbjct: 141 RLLRPDEEIELARKIADLLHLEELAIQFESEHGNYPTKKEWAALVNMPMARFRRRLMLAR 200
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+KEK++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 201 RAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 260
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E P++EE+A + +T++K
Sbjct: 261 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAESMEMTIEK 320
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLLHTLN 248
L + +A++P+S++ + ++D+ + I +D+ E P++ VAK L+R +L TL+
Sbjct: 321 LRFIAKSAQLPISLETPIGKEEDSRLGDFIESDS--ENPELDVAKTLLREDLEGVLATLS 378
Query: 249 PRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQ 296
PRER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+
Sbjct: 379 PRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 426
>K6DHZ3_SPIPL (tr|K6DHZ3) RNA polymerase sigma factor OS=Arthrospira platensis
str. Paraca GN=APPUASWS_21888 PE=3 SV=1
Length = 387
Score = 240 bits (612), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 118/297 (39%), Positives = 198/297 (66%), Gaps = 1/297 (0%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L LE ++ +L + REP EWA+ V + + +L G
Sbjct: 90 RLLRADEEIELARKIADLLELERIREKLIEHYHREPNEKEWANAVDMRLPEFRRRLFLGR 149
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+K+K++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 150 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 209
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A ++ +T++K
Sbjct: 210 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 269
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNP 249
L + +A++P+S++ + ++D+ + ETP+ V+K L+R ++L TL+P
Sbjct: 270 LRFIAKSAQLPISLETPIGKEEDSRLGDFIESDG-ETPEDQVSKNLLREDLESVLDTLSP 328
Query: 250 RERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
RER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 329 RERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEY 385
>D5A0H0_SPIPL (tr|D5A0H0) RNA polymerase sigma factor OS=Arthrospira platensis
NIES-39 GN=sigA PE=3 SV=1
Length = 387
Score = 240 bits (612), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 118/297 (39%), Positives = 198/297 (66%), Gaps = 1/297 (0%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L LE ++ +L + REP EWA+ V + + +L G
Sbjct: 90 RLLRADEEIELARKIADLLELERIREKLIEHYHREPNEKEWANAVDMRLPEFRRRLFLGR 149
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+K+K++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 150 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 209
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A ++ +T++K
Sbjct: 210 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 269
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNP 249
L + +A++P+S++ + ++D+ + ETP+ V+K L+R ++L TL+P
Sbjct: 270 LRFIAKSAQLPISLETPIGKEEDSRLGDFIESDG-ETPEDQVSKNLLREDLESVLDTLSP 328
Query: 250 RERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
RER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 329 RERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEY 385
>H1WE70_9CYAN (tr|H1WE70) RNA polymerase sigma factor OS=Arthrospira sp. PCC 8005
GN=rpoD PE=3 SV=1
Length = 387
Score = 240 bits (612), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 118/297 (39%), Positives = 198/297 (66%), Gaps = 1/297 (0%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L LE ++ +L + REP EWA+ V + + +L G
Sbjct: 90 RLLRADEEIELARKIADLLELERIREKLIEHYHREPNEKEWANAVDMRLPEFRRRLFLGR 149
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+K+K++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 150 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 209
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A ++ +T++K
Sbjct: 210 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 269
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNP 249
L + +A++P+S++ + ++D+ + ETP+ V+K L+R ++L TL+P
Sbjct: 270 LRFIAKSAQLPISLETPIGKEEDSRLGDFIESDG-ETPEDQVSKNLLREDLESVLDTLSP 328
Query: 250 RERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
RER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 329 RERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEY 385
>B5VWQ7_SPIMA (tr|B5VWQ7) RNA polymerase sigma factor OS=Arthrospira maxima
CS-328 GN=AmaxDRAFT_0949 PE=3 SV=1
Length = 387
Score = 240 bits (612), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 118/297 (39%), Positives = 198/297 (66%), Gaps = 1/297 (0%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L LE ++ +L + REP EWA+ V + + +L G
Sbjct: 90 RLLRADEEIELARKIADLLELERIREKLIEHYHREPNEKEWANAVDMRLPEFRRRLFLGR 149
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+K+K++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 150 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 209
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A ++ +T++K
Sbjct: 210 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 269
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNP 249
L + +A++P+S++ + ++D+ + ETP+ V+K L+R ++L TL+P
Sbjct: 270 LRFIAKSAQLPISLETPIGKEEDSRLGDFIESDG-ETPEDQVSKNLLREDLESVLDTLSP 328
Query: 250 RERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
RER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 329 RERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEY 385
>K1X4L7_SPIPL (tr|K1X4L7) RNA polymerase sigma factor OS=Arthrospira platensis C1
GN=SPLC1_S360460 PE=3 SV=1
Length = 372
Score = 240 bits (612), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 118/297 (39%), Positives = 198/297 (66%), Gaps = 1/297 (0%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L LE ++ +L + REP EWA+ V + + +L G
Sbjct: 75 RLLRADEEIELARKIADLLELERIREKLIEHYHREPNEKEWANAVDMRLPEFRRRLFLGR 134
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+K+K++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 135 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 194
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A ++ +T++K
Sbjct: 195 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 254
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNP 249
L + +A++P+S++ + ++D+ + ETP+ V+K L+R ++L TL+P
Sbjct: 255 LRFIAKSAQLPISLETPIGKEEDSRLGDFIESDG-ETPEDQVSKNLLREDLESVLDTLSP 313
Query: 250 RERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
RER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 314 RERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEY 370
>Q5N3Q1_SYNP6 (tr|Q5N3Q1) RNA polymerase sigma factor OS=Synechococcus sp.
(strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rpoD1
PE=3 SV=1
Length = 399
Score = 240 bits (612), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 122/287 (42%), Positives = 195/287 (67%), Gaps = 3/287 (1%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L QI +L LE ++ L Q R P+ AEWA V + +L G
Sbjct: 102 RLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVDSPLDEFRRRLFRGR 161
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+K+K++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 162 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 221
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A ++ +T++K
Sbjct: 222 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 281
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLLHTLN 248
L + +A++P+S++ + ++D+ + I AD ETP+ VAK L+R +L TL+
Sbjct: 282 LRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ETPEDEVAKNLLREDLEGVLSTLS 339
Query: 249 PRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLK 295
PRER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+
Sbjct: 340 PRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLR 386
>A3Z5L5_9SYNE (tr|A3Z5L5) RNA polymerase sigma factor OS=Synechococcus sp. RS9917
GN=RS9917_09721 PE=3 SV=1
Length = 456
Score = 239 bits (611), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 123/287 (42%), Positives = 196/287 (68%), Gaps = 3/287 (1%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L LEE+ + +S GREP EWA V + + +L G
Sbjct: 159 RLLRPDEEIELARKIADLLLLEELAAQFESDNGREPDTKEWAALVEMPVIKFRRRLMLGR 218
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+KEK++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 219 RAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 278
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A + +T++K
Sbjct: 279 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEK 338
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLLHTLN 248
L + +A++P+S++ + ++D+ + I AD IE P+ VAK L+R +L TL+
Sbjct: 339 LRFIAKSAQLPISLETPIGKEEDSRLGDFIEAD--IENPEQDVAKNLLREDLEGVLATLS 396
Query: 249 PRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLK 295
PRER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+
Sbjct: 397 PRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 443
>R0IC61_9BRAS (tr|R0IC61) Uncharacterized protein OS=Capsella rubella
GN=CARUB_v10008711mg PE=4 SV=1
Length = 571
Score = 239 bits (611), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 120/299 (40%), Positives = 189/299 (63%)
Query: 8 TKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRS 67
+ KLLT EE +L + IQ+L +LE ++ L + GR+PT ++WA G+ +L+ ++
Sbjct: 268 SSKLLTVREEHELSAGIQDLLKLERLQAELTERCGRQPTFSQWASAAGVDQKSLRKRINY 327
Query: 68 GTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYA 127
GT+ K+K+I +N+R+V+ +AKNY G G++ QDL+QEG GL++ EKF G +F++YA
Sbjct: 328 GTQCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYA 387
Query: 128 YWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTV 187
+WWI+Q +R++L SR IRLP ++ ++ EA+K E HP EE+A G+++
Sbjct: 388 HWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYTEKGRHPENEEVAEATGLSM 447
Query: 188 DKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTL 247
+L +L + + P S+ Q + +Q+ E+ AD ET + + KQ MR +L +L
Sbjct: 448 KRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAETSEDILIKQFMREDLDKVLDSL 507
Query: 248 NPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
RE+++IR RFG+EDG K+L EIG + G+S+ERVRQ+ES A KLK S+ L Y
Sbjct: 508 GTREKQVIRWRFGMEDGRMKTLQEIGELMGVSRERVRQIESSAFRKLKNKKRSNHLQQY 566
>A0YTZ3_LYNSP (tr|A0YTZ3) RNA polymerase sigma factor OS=Lyngbya sp. (strain PCC
8106) GN=L8106_10432 PE=3 SV=1
Length = 391
Score = 239 bits (611), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 117/297 (39%), Positives = 196/297 (65%), Gaps = 1/297 (0%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L LE ++ +L EP EWA V ++ + +L G
Sbjct: 94 RLLRADEEIELARRIADLLELERIREKLVEHNHCEPEDREWASAVDMALPEFRRRLYLGR 153
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+K+K++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 154 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 213
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A ++ +T++K
Sbjct: 214 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 273
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNP 249
L + +A++P+S++ + ++D+ + ETP+ V+K L+R ++L TL+P
Sbjct: 274 LRFIAKSAQLPISLETPIGKEEDSRLGDFIESDG-ETPEDQVSKNLLREDLESVLDTLSP 332
Query: 250 RERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
RER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 333 RERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEY 389
>B1X5Q2_PAUCH (tr|B1X5Q2) RNA polymerase sigma factor OS=Paulinella chromatophora
GN=rpoDI PE=4 SV=1
Length = 460
Score = 239 bits (611), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 120/288 (41%), Positives = 194/288 (67%), Gaps = 3/288 (1%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L LEE+ + + + G P EWA V +S + +L G
Sbjct: 163 RLLRPDEEIELARKISDLLYLEELAGQFEGRKGYYPDNKEWAALVEMSLIKFRRRLMLGR 222
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+K K++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 223 RAKAKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 282
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A + +T++K
Sbjct: 283 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEK 342
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLLHTLN 248
L + +A++P+S++ + ++D+ + I AD IE P+ VAK L+R +L TL+
Sbjct: 343 LRFIAKSAQLPISLETPIGKEEDSRLGDFIEAD--IENPEQDVAKNLLREDLEGVLATLS 400
Query: 249 PRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQ 296
PRER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+
Sbjct: 401 PRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 448
>A9RG56_PHYPA (tr|A9RG56) Uncharacterized protein OS=Physcomitrella patens subsp.
patens GN=PHYPADRAFT_113461 PE=4 SV=1
Length = 581
Score = 239 bits (610), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 116/304 (38%), Positives = 193/304 (63%), Gaps = 9/304 (2%)
Query: 2 FLWGPETKKLLTFEEESQLISQIQ--NLFR-------LEEVKIRLQSQFGREPTMAEWAD 52
+L + KLLT EE L +IQ LFR LE+V+ LQ GREPT +EW+
Sbjct: 263 YLRDVKNSKLLTAFEEVALSRKIQVTTLFRFRQYTLKLEKVRAELQRDMGREPTRSEWSL 322
Query: 53 GVGLSCYALQTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSV 112
VG++ + +++ G +K+KL+++NLR+VV + KNY GRG++ DL+Q GS+GL++
Sbjct: 323 AVGMNQTLFELRIKEGQCAKDKLVNSNLRLVVSIVKNYQGRGMTLPDLIQRGSLGLIRGA 382
Query: 113 EKFKPQAGCRFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNV 172
EKF P+ G +F++YA WWIRQ + R++ SR IRLP ++Y ++ ++ +++ +
Sbjct: 383 EKFDPEMGFKFSTYATWWIRQAVTRSITDQSRIIRLPVHIYEVISRINKSRMMIAEDQGR 442
Query: 173 HPTKEELARKIGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVA 232
EE+A +G++V+KL+ +L +AR+P SM Q + D+D E+ AD + D ++
Sbjct: 443 QARDEEVATAVGISVEKLDFILKSARLPASMDQLIGRDKDLPLWEMVADKGFNSADDFLT 502
Query: 233 KQLMRRHARNLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALD 292
+++++ +L TL+P ER ++RLRFG++D +L +IG F +++ER+RQ+E RAL
Sbjct: 503 NEVLKQDIDGVLQTLSPTEREVLRLRFGLDDAQSMTLKDIGIFFKVTRERIRQIEVRALR 562
Query: 293 KLKQ 296
KL+
Sbjct: 563 KLRH 566
>Q05RP2_9SYNE (tr|Q05RP2) RNA polymerase sigma factor OS=Synechococcus sp. RS9916
GN=RS9916_27044 PE=3 SV=1
Length = 479
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 125/298 (41%), Positives = 199/298 (66%), Gaps = 3/298 (1%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L LEE+ + +S GREP EWA V + + +L G
Sbjct: 182 RLLRPDEEIELARKIADLLLLEELAAQFESDNGREPDTKEWAALVEMPLIKFRRRLMLGR 241
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+KEK++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 242 RAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 301
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A + +T++K
Sbjct: 302 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEK 361
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLLHTLN 248
L + +A++P+S++ + ++D+ + I AD IE P+ VAK L+R +L TL+
Sbjct: 362 LRFIAKSAQLPISLETPIGKEEDSRLGDFIEAD--IENPEQDVAKNLLREDLEGVLATLS 419
Query: 249 PRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
PRER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 420 PRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEY 477
>K9Z8E6_CYAAP (tr|K9Z8E6) RNA polymerase sigma factor OS=Cyanobacterium aponinum
(strain PCC 10605) GN=Cyan10605_3382 PE=3 SV=1
Length = 386
Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 121/299 (40%), Positives = 197/299 (65%), Gaps = 4/299 (1%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGL-SCYALQTQLRSG 68
+LL EEE +L QI +L LE ++ L GR PT EWA + + +L G
Sbjct: 88 RLLRAEEEIELARQIADLLDLEYIRSTLIEHLGRVPTDEEWAIASDMPNMRQFNRRLHIG 147
Query: 69 TRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 128
++K+K++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA
Sbjct: 148 RKAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 207
Query: 129 WWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVD 188
WWIRQ I RA+ SRTIRLP ++Y + ++ + K +++ PT+EE+A + +T++
Sbjct: 208 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKMLSQKMGRKPTEEEIAEDMEMTIE 267
Query: 189 KLEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLLHTL 247
KL + +A++P+S++ + ++D+ + I AD ETP+ V+K L+R N+L +L
Sbjct: 268 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ETPEDEVSKNLLREDLENVLDSL 325
Query: 248 NPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
+PRER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 326 SPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEY 384
>K9UM88_9CHRO (tr|K9UM88) RNA polymerase sigma factor OS=Chamaesiphon minutus PCC
6605 GN=Cha6605_4648 PE=3 SV=1
Length = 380
Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 119/298 (39%), Positives = 197/298 (66%), Gaps = 3/298 (1%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L LE ++ +L + REP EWA + + +L G
Sbjct: 83 RLLRADEEIELARKIADLLELERMREKLLNDLDREPHDREWAAVASMPLNQFRHRLFLGR 142
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+K+K++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 143 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 202
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A ++ +T++K
Sbjct: 203 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 262
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLLHTLN 248
L + +A++P+S++ + ++D+ + I AD E P+ V+K L+R +L TL+
Sbjct: 263 LRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--EMPEDQVSKSLLREDLEGVLDTLS 320
Query: 249 PRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
PRER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 321 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEY 378
>K7KHD7_SOYBN (tr|K7KHD7) Uncharacterized protein OS=Glycine max PE=4 SV=1
Length = 564
Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 118/297 (39%), Positives = 188/297 (63%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LLT EE +L + IQ+L +LE+++ L +FG +PT A+WA G+ L+ +L G
Sbjct: 265 RLLTPTEEIKLSAGIQDLLKLEKIQEDLAERFGSQPTFAQWAAVAGVDQKTLRKRLNYGI 324
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
K+K+I +N+R+V+ +AKNY G G++ QDL+QEG GL+K EKF G +F++YA+W
Sbjct: 325 FCKDKMIKSNIRLVISIAKNYQGSGMNLQDLVQEGCRGLVKGAEKFDGTKGFKFSTYAHW 384
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WI+Q +R++L SRTIRLP ++ ++ EA+K E P EE+A G+++ +
Sbjct: 385 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRQPDDEEVAEATGLSMKR 444
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNP 249
L +L + P S++Q + +Q+ E+ +D ET + + KQ M++ L +LNP
Sbjct: 445 LNAVLMTPKAPRSLEQKIGINQNLKPSEVISDPDAETAEEQLLKQFMKKDLEEALDSLNP 504
Query: 250 RERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
RER+++R RFG++DG K+L EIG + G+S+ER+RQ+ES A KLK ++ L Y
Sbjct: 505 RERQVVRWRFGMDDGRTKTLQEIGEMLGVSRERIRQIESSAFKKLKNKKRTNHLQQY 561
>K9SJF8_9CYAN (tr|K9SJF8) RNA polymerase sigma factor OS=Pseudanabaena sp. PCC
7367 GN=Pse7367_1641 PE=3 SV=1
Length = 412
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 120/302 (39%), Positives = 201/302 (66%), Gaps = 7/302 (2%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFG----REPTMAEWADGVGLSCYALQTQL 65
+LL +EE +L +I +L LE+ + L ++ G E + ++WA V + + +L
Sbjct: 111 RLLRADEEIELARKIADLLELEQQREELANEMGLDDPEEVSDSDWAVKVDMPLPRFRRRL 170
Query: 66 RSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFAS 125
G R+K+K++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++
Sbjct: 171 YEGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFST 230
Query: 126 YAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGV 185
YA WWIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A ++ +
Sbjct: 231 YATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEM 290
Query: 186 TVDKLEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLL 244
T++KL + +A++P+S++ + ++D+ + I +D ETPD VAK L+R N+L
Sbjct: 291 TIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDG--ETPDDQVAKNLLREDLENVL 348
Query: 245 HTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLD 304
TL+PRER +++LR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L
Sbjct: 349 GTLSPRERDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLK 408
Query: 305 AY 306
Y
Sbjct: 409 EY 410
>K9YJV2_CYASC (tr|K9YJV2) RNA polymerase sigma factor OS=Cyanobacterium stanieri
(strain ATCC 29140 / PCC 7202) GN=Cyast_1251 PE=3 SV=1
Length = 391
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 121/299 (40%), Positives = 196/299 (65%), Gaps = 4/299 (1%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGL-SCYALQTQLRSG 68
+LL EEE +L QI +L LE ++ GR PT EWA + + +L G
Sbjct: 93 RLLRAEEEIELARQIADLLDLEYIRATQIEHLGRIPTDEEWAIACDIPNMRQFNRRLHIG 152
Query: 69 TRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 128
R+K+K++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA
Sbjct: 153 RRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 212
Query: 129 WWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVD 188
WWIRQ I RA+ SRTIRLP ++Y + ++ + K +++ PT+EE+A + +T++
Sbjct: 213 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKMLSQKMGRKPTEEEIAEDMEMTIE 272
Query: 189 KLEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLLHTL 247
KL + +A++P+S++ + ++D+ + I AD ETP+ V+K L+R N+L +L
Sbjct: 273 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ETPEDEVSKNLLREDLENVLDSL 330
Query: 248 NPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
+PRER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 331 SPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEY 389
>A2BVF8_PROM5 (tr|A2BVF8) RNA polymerase sigma factor OS=Prochlorococcus marinus
(strain MIT 9515) GN=P9515_05601 PE=3 SV=1
Length = 397
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 119/287 (41%), Positives = 199/287 (69%), Gaps = 3/287 (1%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L +LEE+ + +S+ G P++ EWA+ + + + +L G
Sbjct: 100 RLLRPDEEIELARKIADLLQLEELATQFESEKGHFPSVREWAELIDMPLSKFRRRLLLGR 159
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+KEK++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 160 RAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 219
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E P++EE+A + +T++K
Sbjct: 220 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAESMEMTIEK 279
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLLHTLN 248
L + +A++P+S++ + ++D+ + I AD IE P+ V+K L+R +L TL+
Sbjct: 280 LRFIAKSAQLPISLETPIGKEEDSRLGDFIEAD--IENPEQDVSKTLLREDLEGVLATLS 337
Query: 249 PRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLK 295
PRER ++RLR+GI+DG K+L EIG +F +++ER+RQ+E++AL KL+
Sbjct: 338 PRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 384
>K9RSJ7_SYNP3 (tr|K9RSJ7) RNA polymerase sigma factor OS=Synechococcus sp.
(strain ATCC 27167 / PCC 6312) GN=Syn6312_1261 PE=3 SV=1
Length = 382
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 118/302 (39%), Positives = 197/302 (65%), Gaps = 6/302 (1%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAE-----WADGVGLSCYALQTQ 64
+LL +EE +L +I +L LE ++ R+ Q +P E WA V ++ A + +
Sbjct: 80 RLLRADEEIELARKIADLLELERIRDRISEQLDCDPDDLERHPEPWASEVKMTLPAFRHR 139
Query: 65 LRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFA 124
L G R+KEK++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F+
Sbjct: 140 LFVGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFS 199
Query: 125 SYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIG 184
+YA WWIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A ++
Sbjct: 200 TYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIAERME 259
Query: 185 VTVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLL 244
+T++KL + +A++P+S++ + ++D+ + ETP+ V+K L+R +L
Sbjct: 260 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDG-ETPEDQVSKHLLREDLETVL 318
Query: 245 HTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLD 304
TL+PRER +++LR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L
Sbjct: 319 CTLSPRERDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLK 378
Query: 305 AY 306
Y
Sbjct: 379 EY 380
>Q31C37_PROM9 (tr|Q31C37) RNA polymerase sigma factor OS=Prochlorococcus marinus
(strain MIT 9312) GN=PMT9312_0497 PE=3 SV=1
Length = 393
Score = 238 bits (606), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 119/288 (41%), Positives = 199/288 (69%), Gaps = 3/288 (1%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L +LEE+ + +S+ G P++ EWA+ + + + +L G
Sbjct: 96 RLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELIDMPLSKFRRRLLLGR 155
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+KEK++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 156 RAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 215
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E P++EE+A + +T++K
Sbjct: 216 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAESMEMTIEK 275
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLLHTLN 248
L + +A++P+S++ + ++D+ + I AD IE P+ V+K L+R +L TL+
Sbjct: 276 LRFIAKSAQLPISLETPIGKEEDSRLGDFIEAD--IENPEQDVSKTLLREDLEGVLATLS 333
Query: 249 PRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQ 296
PRER ++RLR+GI+DG K+L EIG +F +++ER+RQ+E++AL KL+
Sbjct: 334 PRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 381
>A8G3L2_PROM2 (tr|A8G3L2) RNA polymerase sigma factor OS=Prochlorococcus marinus
(strain MIT 9215) GN=rpoD PE=3 SV=1
Length = 393
Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 119/287 (41%), Positives = 199/287 (69%), Gaps = 3/287 (1%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L +LEE+ + +S+ G P++ EWA+ + + + +L G
Sbjct: 96 RLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELIDMPLSKFRRRLLLGR 155
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+KEK++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 156 RAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 215
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E P++EE+A + +T++K
Sbjct: 216 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAESMEMTIEK 275
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLLHTLN 248
L + +A++P+S++ + ++D+ + I AD IE P+ V+K L+R +L TL+
Sbjct: 276 LRFIAKSAQLPISLETPIGKEEDSRLGDFIEAD--IENPEQDVSKTLLREDLEGVLATLS 333
Query: 249 PRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLK 295
PRER ++RLR+GI+DG K+L EIG +F +++ER+RQ+E++AL KL+
Sbjct: 334 PRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 380
>A2BPX8_PROMS (tr|A2BPX8) RNA polymerase sigma factor OS=Prochlorococcus marinus
(strain AS9601) GN=A9601_05531 PE=3 SV=1
Length = 394
Score = 237 bits (604), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 119/287 (41%), Positives = 199/287 (69%), Gaps = 3/287 (1%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L +LEE+ + +S+ G P++ EWA+ + + + +L G
Sbjct: 97 RLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELIDMPLAKFRRRLLLGR 156
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+KEK++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 157 RAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 216
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E P++EE+A + +T++K
Sbjct: 217 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAESMEMTIEK 276
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLLHTLN 248
L + +A++P+S++ + ++D+ + I AD IE P+ V+K L+R +L TL+
Sbjct: 277 LRFIAKSAQLPISLETPIGKEEDSRLGDFIEAD--IENPEQDVSKTLLREDLEGVLATLS 334
Query: 249 PRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLK 295
PRER ++RLR+GI+DG K+L EIG +F +++ER+RQ+E++AL KL+
Sbjct: 335 PRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 381
>B9P0P2_PROMR (tr|B9P0P2) RNA polymerase sigma factor OS=Prochlorococcus marinus
str. MIT 9202 GN=P9202_111 PE=3 SV=1
Length = 393
Score = 237 bits (604), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 119/287 (41%), Positives = 199/287 (69%), Gaps = 3/287 (1%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L +LEE+ + +S+ G P++ EWA+ + + + +L G
Sbjct: 96 RLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELIDMPLSKFRRRLLLGR 155
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+KEK++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 156 RAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 215
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E P++EE+A + +T++K
Sbjct: 216 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAESMEMTIEK 275
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLLHTLN 248
L + +A++P+S++ + ++D+ + I AD IE P+ V+K L+R +L TL+
Sbjct: 276 LRFIAKSAQLPISLETPIGKEEDSRLGDFIEAD--IENPEQDVSKTLLREDLEGVLATLS 333
Query: 249 PRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLK 295
PRER ++RLR+GI+DG K+L EIG +F +++ER+RQ+E++AL KL+
Sbjct: 334 PRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 380
>A3PBM1_PROM0 (tr|A3PBM1) RNA polymerase sigma factor OS=Prochlorococcus marinus
(strain MIT 9301) GN=P9301_05231 PE=3 SV=1
Length = 394
Score = 237 bits (604), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 119/287 (41%), Positives = 199/287 (69%), Gaps = 3/287 (1%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L +LEE+ + +S+ G P++ EWA+ + + + +L G
Sbjct: 97 RLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELIDMPLPKFRRRLLLGR 156
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+KEK++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 157 RAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 216
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E P++EE+A + +T++K
Sbjct: 217 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAESMEMTIEK 276
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLLHTLN 248
L + +A++P+S++ + ++D+ + I AD IE P+ V+K L+R +L TL+
Sbjct: 277 LRFIAKSAQLPISLETPIGKEEDSRLGDFIEAD--IENPEQDVSKTLLREDLEGVLATLS 334
Query: 249 PRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLK 295
PRER ++RLR+GI+DG K+L EIG +F +++ER+RQ+E++AL KL+
Sbjct: 335 PRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 381
>K9P2V4_CYAGP (tr|K9P2V4) RNA polymerase sigma factor OS=Cyanobium gracile
(strain ATCC 27147 / PCC 6307) GN=Cyagr_0083 PE=3 SV=1
Length = 432
Score = 237 bits (604), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 119/288 (41%), Positives = 191/288 (66%), Gaps = 3/288 (1%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L LEE ++ G P EWA + + +L G
Sbjct: 135 RLLRPDEEIELARKIADLLELEEKAAEFEADKGHFPDTKEWAAIFDMPLIKFRRRLMLGR 194
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+KEK++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 195 RAKEKMVLSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 254
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A + +T++K
Sbjct: 255 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKTLSQEFGRKPTEEEIAESMEMTIEK 314
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLLHTLN 248
L + +A++P+S++ + ++D+ + I AD IE P+ VAK L+R +L TL+
Sbjct: 315 LRFIAKSAQLPISLETPIGKEEDSRLGDFIEAD--IENPEQDVAKNLLREDLEGVLATLS 372
Query: 249 PRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQ 296
PRER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+
Sbjct: 373 PRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 420
>D7KIT0_ARALL (tr|D7KIT0) Putative uncharacterized protein OS=Arabidopsis lyrata
subsp. lyrata GN=ARALYDRAFT_470915 PE=4 SV=1
Length = 572
Score = 236 bits (603), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 119/299 (39%), Positives = 188/299 (62%)
Query: 8 TKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRS 67
+ KLLT EE +L + IQ+L +LE ++ L + GR+PT A+WA G+ +L+ ++
Sbjct: 269 SSKLLTVREEHELSAGIQDLLKLERLQTELTERCGRQPTFAQWASAAGVDQKSLRKRIHH 328
Query: 68 GTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYA 127
GT K+K+I +N+R+V+ +AKNY G G++ QDL+QEG GL++ EKF G +F++YA
Sbjct: 329 GTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYA 388
Query: 128 YWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTV 187
+WWI+Q +R++L SR IRLP ++ ++ EA+K E HP EE+A G+++
Sbjct: 389 HWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSM 448
Query: 188 DKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTL 247
+L +L + + P S+ Q + +Q+ E+ AD T + + K+ MR+ +L +L
Sbjct: 449 KRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSL 508
Query: 248 NPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
RE+++IR RFG+EDG K+L EIG + G+S+ERVRQ+ES A KLK S+ L Y
Sbjct: 509 GTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRSNHLQQY 567
>R7QDV9_CHOCR (tr|R7QDV9) Stackhouse genomic scaffold, scaffold_226 OS=Chondrus
crispus GN=CHC_T00004323001 PE=4 SV=1
Length = 414
Score = 236 bits (603), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 119/289 (41%), Positives = 181/289 (62%), Gaps = 2/289 (0%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
KLL E E L +I L LE + L+ G EP + EWA ++ + LR G
Sbjct: 111 KLLDAESEINLAREIAKLLELERISATLKDANGFEPAIPEWAAAADMNIEVFRETLRRGL 170
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+KE ++ ANLR+VV +AK YL RGLSFQDL+QEGS+GL++ EKF G +F++YA W
Sbjct: 171 RAKEHMVAANLRLVVSIAKKYLNRGLSFQDLIQEGSIGLIRGAEKFDGNKGFKFSTYATW 230
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ HSR IRLP +V + + +A K + E N PT+ E+A ++ ++++K
Sbjct: 231 WIRQAITRAIADHSRPIRLPVHVNDTIAAIKKATKLLSTEMNRSPTETEIAERLQISIEK 290
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIE--TPDVYVAKQLMRRHARNLLHTL 247
L L ++AR +S++ + D + + + E TP+ K L+R N+L+TL
Sbjct: 291 LRFLSTSARATISLETPIGRDGKESNATLGSFIVWEGDTPEESTMKSLLREDLENVLNTL 350
Query: 248 NPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQ 296
+PRER ++R+R+G +DG K+L EIG +F +++ER+RQ+E++AL KL+
Sbjct: 351 SPRERDVVRMRYGFDDGKMKTLEEIGCLFAVTRERIRQIEAKALRKLRH 399
>Q7V2I0_PROMP (tr|Q7V2I0) RNA polymerase sigma factor OS=Prochlorococcus marinus
subsp. pastoris (strain CCMP1986 / MED4) GN=sigA PE=3
SV=1
Length = 396
Score = 236 bits (602), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 119/287 (41%), Positives = 198/287 (68%), Gaps = 3/287 (1%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L +LEE+ + +S+ G P++ EWA+ + + +L G
Sbjct: 99 RLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELTDMPLSKFRRRLLLGR 158
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+KEK++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 159 RAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 218
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E P++EE+A + +T++K
Sbjct: 219 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAESMEMTIEK 278
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLLHTLN 248
L + +A++P+S++ + ++D+ + I AD IE P+ V+K L+R +L TL+
Sbjct: 279 LRFIAKSAQLPISLETPIGKEEDSRLGDFIEAD--IENPEQDVSKTLLREDLEGVLATLS 336
Query: 249 PRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLK 295
PRER ++RLR+GI+DG K+L EIG +F +++ER+RQ+E++AL KL+
Sbjct: 337 PRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 383
>A4RYI5_OSTLU (tr|A4RYI5) Predicted protein OS=Ostreococcus lucimarinus (strain
CCE9901) GN=OSTLU_41331 PE=4 SV=1
Length = 344
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 119/299 (39%), Positives = 193/299 (64%), Gaps = 3/299 (1%)
Query: 11 LLTFEEESQLISQIQNLFRLEEVKIRL--QSQFGREPTMAEWADGVGLSCYALQTQLRSG 68
LL +E +L +IQ+L LE ++ L ++ G E T +WA GL+ AL +LR G
Sbjct: 29 LLNAGQEVELAKRIQDLMHLESIRENLVEETGPGAEVTDYQWASAAGLNVQALHQRLRDG 88
Query: 69 TRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 128
+K ++I ANLR+VV +AK Y +SFQDL+QEG +GL++ EKF Q G +F++YA+
Sbjct: 89 KSAKNEMIQANLRLVVSIAKKYANSNMSFQDLIQEGCVGLIRGAEKFDFQRGYKFSTYAH 148
Query: 129 WWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVD 188
WWIRQ + R++ SRTIRLP +++ ++ ++ + ++ + +PT EE+A ++ ++ +
Sbjct: 149 WWIRQAVTRSISDQSRTIRLPVHLFEIISRISKMEQKFALHNGRNPTTEEIAAEMDMSAE 208
Query: 189 KLEILLSAARIPLSMQQTVWTD-QDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTL 247
K+ + AA+ P+S+ QT+ D + T ++ D E P+ K L++ N+L+TL
Sbjct: 209 KITQIKKAAQAPVSLAQTMGGDNKGRTVEDTLVDVTAEGPEKVSGKSLLKEDLENVLNTL 268
Query: 248 NPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
NPRER ++RLR+G++DG K+L EIGTVF +++ER+RQ+E++AL KLKQ + L Y
Sbjct: 269 NPRERDVLRLRYGLDDGRVKTLEEIGTVFSVTRERIRQIEAKALRKLKQPSRNSILQEY 327
>K9SYS4_9SYNE (tr|K9SYS4) RNA polymerase sigma factor OS=Synechococcus sp. PCC
7502 GN=Syn7502_03470 PE=3 SV=1
Length = 393
Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 116/300 (38%), Positives = 197/300 (65%), Gaps = 4/300 (1%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFG---REPTMAEWADGVGLSCYALQTQLR 66
+LL +EE +L +I +L +LE+ + L Q + + +WA + + + +L
Sbjct: 93 RLLRADEEIELARKIADLLQLEDKQRELAEQHDCDLEDVNLEDWAVEMDMPLDKFKNRLH 152
Query: 67 SGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASY 126
SG R+K+K++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++Y
Sbjct: 153 SGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTY 212
Query: 127 AYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVT 186
A WWIRQ I RA+ SRTIRLP ++Y + ++ + K ++E P++EE+A ++ +T
Sbjct: 213 ATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPSEEEIATRMEMT 272
Query: 187 VDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHT 246
++KL + +A++P+S++ + ++D+ + ETPD VAK L+R ++L T
Sbjct: 273 IEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDG-ETPDDQVAKNLLREDLESVLGT 331
Query: 247 LNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
L+PRER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 332 LSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEY 391
>K4AY41_SOLLC (tr|K4AY41) Uncharacterized protein OS=Solanum lycopersicum
GN=Solyc01g081490.2 PE=4 SV=1
Length = 613
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 118/301 (39%), Positives = 185/301 (61%)
Query: 8 TKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRS 67
+ +LLT EE +L IQ+L +LE +++ L + G +PT +WA G+ L+ +L
Sbjct: 312 SSRLLTASEEQELSRGIQDLLKLERLQVELTERCGGQPTFTQWAAAAGVDQMTLRKRLNY 371
Query: 68 GTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYA 127
G K+K+I +N+R+V+ +AKNY G G++ QDL+QEG GL++ EKF G +F++YA
Sbjct: 372 GILCKDKMIKSNVRLVISIAKNYQGVGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYA 431
Query: 128 YWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTV 187
+WWI+Q +R++L SRTIRLP ++ ++ EA+K E HP E+A G+++
Sbjct: 432 HWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLLTENGRHPNDAEVAEATGLSM 491
Query: 188 DKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTL 247
+L ++ + P S+ Q V ++ E+ AD ET + + KQ MR+ +L TL
Sbjct: 492 KRLAAVMLTPKAPRSLDQKVGFNESLKPSEVLADPDAETSEEILTKQFMRQDLEKVLDTL 551
Query: 248 NPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAYA 307
NPRE++++R RFG+EDG K+L EIG + G+S+ER+RQ+ES A KLK + L Y
Sbjct: 552 NPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKFLQQYI 611
Query: 308 N 308
N
Sbjct: 612 N 612
>Q710C3_SPIOL (tr|Q710C3) Sigma factor OS=Spinacia oleracea GN=sig2 PE=2 SV=2
Length = 575
Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 116/299 (38%), Positives = 187/299 (62%)
Query: 8 TKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRS 67
+ +LLT EE++L + IQ+L +LE++ L+ +FG+ P+ +WA G+ L+ +L
Sbjct: 274 SSRLLTSSEETELSAGIQDLLKLEKLHDELKVRFGKSPSFVQWAAAAGIDQRTLRRRLNH 333
Query: 68 GTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYA 127
GT K+K+I +N+R+V+ +AKNY G G++ QDL+QEG GL++ EKF G +F++YA
Sbjct: 334 GTFCKDKMIKSNVRLVISIAKNYQGSGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 393
Query: 128 YWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTV 187
+WWI+Q +R++L SRTIRLP ++ ++ EA+K E P EE+A G+++
Sbjct: 394 HWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGKQPNNEEVAEATGLSM 453
Query: 188 DKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTL 247
+L +L + P S+ Q + + + E+ AD ET + + KQ MR+ +L TL
Sbjct: 454 KRLTAVLMTPKAPRSLDQKIGFNMNLKPSEVIADPEAETAEDLLTKQFMRQDLEKVLDTL 513
Query: 248 NPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
+ RE+++IR RFG+EDG K+L EIG + G+S+ER+RQ+ES A KL+ + L Y
Sbjct: 514 SSREKQVIRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLQNKKKTINLQQY 572
>Q8DL79_THEEB (tr|Q8DL79) RNA polymerase sigma factor OS=Thermosynechococcus
elongatus (strain BP-1) GN=sigA PE=3 SV=1
Length = 418
Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 116/294 (39%), Positives = 195/294 (66%), Gaps = 10/294 (3%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFG-------REPTMAEWADGVGLSCYALQ 62
+LL +EE +L +I +L +E V+ RL + G R P WA +G++ A +
Sbjct: 116 RLLRADEEIELARKIADLLEMERVRDRLCQELGCTAEELERNP--EPWAKELGMTVPAFR 173
Query: 63 TQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCR 122
+L G ++KEK++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +
Sbjct: 174 HRLFVGRKAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 233
Query: 123 FASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARK 182
F++YA WWIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A +
Sbjct: 234 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIADR 293
Query: 183 IGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARN 242
+ +T++KL + +A++P+S++ + ++D+ + ETP+ V+K L+R
Sbjct: 294 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDG-ETPEDQVSKHLLREDLET 352
Query: 243 LLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQ 296
+L TL+PRER +++LR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+
Sbjct: 353 VLCTLSPRERDVLKLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLRH 406
>B9IPZ1_POPTR (tr|B9IPZ1) Predicted protein OS=Populus trichocarpa
GN=POPTRDRAFT_780378 PE=4 SV=1
Length = 564
Score = 233 bits (595), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 118/295 (40%), Positives = 185/295 (62%), Gaps = 1/295 (0%)
Query: 2 FLWGPETK-KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYA 60
F G T +LL+ EE +L IQ+L +LE ++ L+ +FG +PT A+WA +
Sbjct: 256 FFRGASTSSRLLSATEEVELSEGIQDLLKLERIEEELKERFGGKPTFAQWAAAARVDQIT 315
Query: 61 LQTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAG 120
L+ +L K+K+I +N+R+V+ +AKNY G G++ QDL+QEG GL++ VEKF G
Sbjct: 316 LRKRLNYAILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGVEKFDASKG 375
Query: 121 CRFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELA 180
+F++YA+WWIRQ +RR+L SRTIRLP ++ ++ EA+K + E HP +E+A
Sbjct: 376 FKFSTYAHWWIRQAVRRSLSDQSRTIRLPFHMVDATYRVKEARKQFYSENGRHPDDKEVA 435
Query: 181 RKIGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHA 240
G+++ +L +L + P S+ Q + + D E+TAD ET + + K+ M++
Sbjct: 436 EATGLSMKRLSAVLLTPKAPRSLDQKMGFNMDLKLSEVTADPEAETAEDLLMKEFMKKDL 495
Query: 241 RNLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLK 295
+L +L+PRE ++IR RFG+EDG K+L EIG + G+S+ER+RQ+E A KLK
Sbjct: 496 ERVLESLSPRENQVIRWRFGMEDGRMKTLQEIGELMGVSRERIRQIELSAFRKLK 550
>K9EXS2_9CYAN (tr|K9EXS2) RNA polymerase sigma factor OS=Leptolyngbya sp. PCC
7375 GN=Lepto7375DRAFT_3552 PE=3 SV=1
Length = 376
Score = 233 bits (594), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 119/297 (40%), Positives = 195/297 (65%), Gaps = 1/297 (0%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL EEE +L +I +L LE ++ L EP A+WA V + A + +L G
Sbjct: 79 RLLRAEEEIELARKIADLLELERIRDDLSDGMDHEPDDADWAAAVDMPLPAFRRRLHLGR 138
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+K+K++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 139 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 198
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A ++ +T++K
Sbjct: 199 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQELGRKPTEEEIATRMEMTIEK 258
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNP 249
L + +A++P+S++ + ++D+ + ETP+ V+K L+R +L TL+P
Sbjct: 259 LRFIAKSAQLPISLETPIGKEEDSRLGDFIESDG-ETPEDEVSKSLLREDLEGVLSTLSP 317
Query: 250 RERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
RER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 318 RERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEY 374
>M4DQ26_BRARP (tr|M4DQ26) Uncharacterized protein OS=Brassica rapa subsp.
pekinensis GN=Bra018617 PE=4 SV=1
Length = 573
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 117/299 (39%), Positives = 184/299 (61%)
Query: 8 TKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRS 67
+ KLLT EE QL IQ+L +LE ++ L + G +PT+A+WA G+ L+ ++
Sbjct: 267 SSKLLTAREEQQLSEGIQDLLKLERLQAELTERCGHQPTLAQWASAAGIDKKTLRKRITH 326
Query: 68 GTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYA 127
GT+ K+++I +N+R+V+ +AKNY G G+ FQDL+QEG GL++ EKF G +F++YA
Sbjct: 327 GTQCKDRMIKSNIRLVISIAKNYQGAGMDFQDLVQEGCRGLVRGAEKFDATKGFKFSTYA 386
Query: 128 YWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTV 187
+WWI+Q +R++L SR IRLP ++ ++ EA+K E P EE+A G+++
Sbjct: 387 HWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKQPKNEEVAEATGLSM 446
Query: 188 DKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTL 247
+L +L + + P S+ Q + + + E+ +D ET + + KQ MR +L +L
Sbjct: 447 KRLMAVLLSPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILMKQFMREDLDKVLDSL 506
Query: 248 NPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
RE+++IR RFG+EDG K+L EIG G+S+ERVRQ+ES A KLK ++ L Y
Sbjct: 507 GTREKQVIRWRFGMEDGRMKTLQEIGETMGVSRERVRQIESSAFRKLKNKKRNNHLQQY 565
>M1D2M3_SOLTU (tr|M1D2M3) Uncharacterized protein OS=Solanum tuberosum
GN=PGSC0003DMG400031111 PE=4 SV=1
Length = 613
Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 116/301 (38%), Positives = 184/301 (61%)
Query: 8 TKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRS 67
+ +LLT EE +L IQ+L +LE +++ L + G +PT +WA G+ L+ +L
Sbjct: 312 SSRLLTASEEQELSRGIQDLLKLERLQVELTERCGGQPTFTQWAAAAGVDQMTLRKRLNY 371
Query: 68 GTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYA 127
G K+K+I +N+R+V+ +AKNY G G++ QDL+QEG GL++ EKF G +F++YA
Sbjct: 372 GILCKDKMIKSNVRLVISIAKNYQGVGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYA 431
Query: 128 YWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTV 187
+WWI+Q +R++L SR IRLP ++ ++ EA+K E HP E+A G+++
Sbjct: 432 HWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLLTENGRHPNDAEVAEAAGLSM 491
Query: 188 DKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTL 247
+L ++ + P S+ Q + ++ E+ AD ET + + KQ MR+ +L TL
Sbjct: 492 KRLAAVMLTPKAPRSLDQKIGFNESLKPSEVLADPEAETSEEILTKQFMRQDLEKVLDTL 551
Query: 248 NPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAYA 307
NPRE++++R RFG+EDG K+L EIG + G+S+ER+RQ+ES A KLK + L Y
Sbjct: 552 NPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKFLQQYI 611
Query: 308 N 308
N
Sbjct: 612 N 612
>A3IZB7_9CHRO (tr|A3IZB7) RNA polymerase sigma factor OS=Cyanothece sp. CCY0110
GN=CY0110_28609 PE=3 SV=1
Length = 328
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 120/285 (42%), Positives = 181/285 (63%), Gaps = 1/285 (0%)
Query: 11 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 70
LLT E+E Q+Q + L E K L + G+EP++ EWA V + ALQ L G R
Sbjct: 32 LLTHEQEIIYGKQVQTMMNLLEKKEELAQRVGKEPSIQEWAKEVNIEEKALQKALEQGER 91
Query: 71 SKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 130
+K K+I ANLR+VV +AK Y R + F DL+QEGS+GL + VEKF P G +F++YAYWW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 131 IRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKL 190
IRQ I RA+ +RTIRLP ++ L K+ + ++ ++ T E+A+++ + ++
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQSLGRSATPAEIAQELEIEPSQI 211
Query: 191 EILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPR 250
LS AR P+S+ V +QDT E+ D + +PD+Y+ ++L+R+ NL+ L P+
Sbjct: 212 REFLSIARQPISLDVRVGDNQDTELSELLEDQGV-SPDIYITQELLRQDLSNLMAELTPQ 270
Query: 251 ERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLK 295
+R ++ LRFG+EDG E SL++IG +S+ERVRQLE +AL +L+
Sbjct: 271 QRTVLTLRFGLEDGKELSLAKIGKRLNISRERVRQLEHQALAQLR 315
>L8N2V5_9CYAN (tr|L8N2V5) RNA polymerase sigma factor OS=Pseudanabaena biceps PCC
7429 GN=Pse7429DRAFT_1651 PE=3 SV=1
Length = 394
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 111/264 (42%), Positives = 182/264 (68%), Gaps = 4/264 (1%)
Query: 43 REPTMAEWADGVGLSCYALQTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQ 102
REP EWA +G+ + +L SG R+K+K++ +NLR+VV +AK Y+ RGLSFQDL+Q
Sbjct: 133 REP---EWAIKMGMPLGEFRKRLHSGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 189
Query: 103 EGSMGLMKSVEKFKPQAGCRFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEA 162
EGS+GL+++ EKF + G +F++YA WWIRQ I RA+ SRTIRLP ++Y + ++ +
Sbjct: 190 EGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKT 249
Query: 163 KKFYNREGNVHPTKEELARKIGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADT 222
K ++E PT+EE+A ++ +T++KL + +A++P+S++ + ++D+ + ++
Sbjct: 250 TKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ES 308
Query: 223 AIETPDVYVAKQLMRRHARNLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKER 282
ETPD VAK L+R ++L TL+PRER ++RLR+G++DG K+L EIG +F +++ER
Sbjct: 309 EGETPDDQVAKSLLREDLESVLGTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRER 368
Query: 283 VRQLESRALDKLKQCLASHGLDAY 306
+RQ+E++AL KL+ + L Y
Sbjct: 369 IRQIEAKALRKLRHPNRNSVLKEY 392
>A3YZH3_9SYNE (tr|A3YZH3) RNA polymerase sigma factor OS=Synechococcus sp. WH
5701 GN=WH5701_12059 PE=3 SV=1
Length = 469
Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 120/287 (41%), Positives = 193/287 (67%), Gaps = 3/287 (1%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGT 69
+LL +EE +L +I +L LEE+ + + G P EWA V + + +L G
Sbjct: 172 RLLRPDEEIELARKIADLLLLEELAGQFEQDNGHYPDNKEWAVLVDMPPVKFRRRLMLGR 231
Query: 70 RSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 129
R+KEK++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA W
Sbjct: 232 RAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 291
Query: 130 WIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDK 189
WIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A + +T++K
Sbjct: 292 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEK 351
Query: 190 LEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLLHTLN 248
L + +A++P+S++ + ++D+ + I AD IE P+ VAK L+R +L TL+
Sbjct: 352 LRFIAKSAQLPISLETPIGKEEDSRLGDFIEAD--IENPEQDVAKNLLREDLEGVLATLS 409
Query: 249 PRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLK 295
PRER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+
Sbjct: 410 PRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 456
>B1WQ73_CYAA5 (tr|B1WQ73) RNA polymerase sigma factor OS=Cyanothece sp. (strain
ATCC 51142) GN=sigB PE=3 SV=1
Length = 328
Score = 230 bits (587), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 120/285 (42%), Positives = 179/285 (62%), Gaps = 1/285 (0%)
Query: 11 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 70
LLT E+E Q+Q + L E K L G+EP++ EWA V L AL L G R
Sbjct: 32 LLTHEQEIIYGKQVQKMMSLLETKEELAQSLGKEPSLQEWAKEVNLEEKALTKALEQGER 91
Query: 71 SKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 130
+K K+I ANLR+VV +AK Y R + F DL+QEGS+GL + VEKF P G +F++YAYWW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 131 IRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKL 190
IRQ I RA+ +RTIRLP ++ L K+ + ++ ++ T E+A+++ + ++
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQTLGRSATPAEIAQELEIEPSQI 211
Query: 191 EILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPR 250
LS AR P+S+ V +QDT E+ D + +PD+Y+ ++L+R+ NL+ L P+
Sbjct: 212 REFLSIARQPISLDVRVGDNQDTELSELLEDQGV-SPDIYITQELLRQDLSNLMAELTPQ 270
Query: 251 ERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLK 295
+R ++ LRFG+EDG E SL++IG +S+ERVRQLE +AL +L+
Sbjct: 271 QRTVLTLRFGLEDGKELSLAKIGKRLNISRERVRQLEHQALAQLR 315
>G6GV95_9CHRO (tr|G6GV95) RNA polymerase sigma factor OS=Cyanothece sp. ATCC
51472 GN=Cy51472DRAFT_2908 PE=3 SV=1
Length = 328
Score = 230 bits (587), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 120/285 (42%), Positives = 179/285 (62%), Gaps = 1/285 (0%)
Query: 11 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 70
LLT E+E Q+Q + L E K L G+EP++ EWA V L AL L G R
Sbjct: 32 LLTHEQEIIYGKQVQKMMSLLETKEELAQSLGKEPSLQEWAKEVNLEEKALTKALEQGER 91
Query: 71 SKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 130
+K K+I ANLR+VV +AK Y R + F DL+QEGS+GL + VEKF P G +F++YAYWW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 131 IRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKL 190
IRQ I RA+ +RTIRLP ++ L K+ + ++ ++ T E+A+++ + ++
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQTLGRSATPAEIAQELEIEPSQI 211
Query: 191 EILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPR 250
LS AR P+S+ V +QDT E+ D + +PD+Y+ ++L+R+ NL+ L P+
Sbjct: 212 REFLSIARQPISLDVRVGDNQDTELSELLEDQGV-SPDIYITQELLRQDLSNLMAELTPQ 270
Query: 251 ERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLK 295
+R ++ LRFG+EDG E SL++IG +S+ERVRQLE +AL +L+
Sbjct: 271 QRTVLTLRFGLEDGKELSLAKIGKRLNISRERVRQLEHQALAQLR 315
>E0UE62_CYAP2 (tr|E0UE62) RNA polymerase sigma factor OS=Cyanothece sp. (strain
PCC 7822) GN=Cyan7822_2208 PE=3 SV=1
Length = 328
Score = 230 bits (587), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 120/285 (42%), Positives = 182/285 (63%), Gaps = 1/285 (0%)
Query: 11 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 70
LLT E+E Q+Q + L E K L Q REP++ EWA+ V +S L ++ G R
Sbjct: 32 LLTHEQEIVYGKQVQKMMTLLEKKDELAIQLEREPSLTEWANHVQMSEEELNRAIQQGKR 91
Query: 71 SKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 130
+K K+I ANLR+VV +AK Y R + F DL+QEGS+GL + VEKF P G +F++YAYWW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 131 IRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKL 190
IRQ I RA+ +RTIRLP ++ L K+ + ++ +++ T E+A+ + + D++
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQQLGRSATPSEIAKALDLEPDQI 211
Query: 191 EILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPR 250
LS +R P+S+ V +QDT E+ D I +PD Y+ ++LMR+ ++LL L P+
Sbjct: 212 REFLSMSRQPISLDVRVGDNQDTELSELLEDEGI-SPDNYITQELMRQDLQDLLAELTPQ 270
Query: 251 ERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLK 295
+R ++ LRFG++DG E SL++IG +S+ERVRQLE +AL +L+
Sbjct: 271 QREVLSLRFGLQDGKELSLAKIGQRMNISRERVRQLEHQALSQLR 315
>Q2JT33_SYNJA (tr|Q2JT33) RNA polymerase sigma factor OS=Synechococcus sp.
(strain JA-3-3Ab) GN=CYA_2037 PE=3 SV=1
Length = 364
Score = 230 bits (586), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 131/299 (43%), Positives = 191/299 (63%), Gaps = 20/299 (6%)
Query: 11 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWA-------DGVGLSCYALQT 63
LL +EE L ++Q+ +L +V++RLQ + GREPT+AEWA + L+ LQ
Sbjct: 58 LLGRDEEVALAQRVQDYMKLLDVRLRLQKELGREPTLAEWAARANQYPEWANLTPEKLQQ 117
Query: 64 QLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRF 123
R G R+KE +I ANLR+VV VAK Y RGL DL+QEG++GL ++VEKF P+ G RF
Sbjct: 118 IQRIGKRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPKKGYRF 177
Query: 124 ASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKI 183
++YAYWWIRQ I RA+ SRTIRLP ++ L K+ +A++ ++E PT E++A ++
Sbjct: 178 STYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKLSQEKGRTPTIEDIASEL 237
Query: 184 GVTVDKLEILLSAARIP--LSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMR---- 237
+TV ++ LL R+P +S++ V D+DT ++ +ET D+ + +MR
Sbjct: 238 EMTVPQVRELL--VRVPRSVSLETKVGKDKDTELGDL-----LETDDISPEETMMREALH 290
Query: 238 RHARNLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQ 296
R + LL L RER +IR+RFG+ DG SL+EIG LS+ERVRQ+E++AL KL+Q
Sbjct: 291 RDLQQLLADLTSRERDVIRMRFGLGDGRTYSLAEIGRALDLSRERVRQIEAKALQKLRQ 349
>I4G7M0_MICAE (tr|I4G7M0) RNA polymerase sigma factor OS=Microcystis aeruginosa
PCC 9443 GN=rpoD PE=3 SV=1
Length = 328
Score = 229 bits (585), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 124/290 (42%), Positives = 180/290 (62%), Gaps = 1/290 (0%)
Query: 11 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 70
LLT E+E Q+Q + L E K L Q GREP EWAD V LS L L++G R
Sbjct: 32 LLTHEQEIIYGKQVQRMMSLLEAKEGLSKQLGREPQQLEWADSVNLSENELDRALKTGDR 91
Query: 71 SKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 130
+K K+I ANLR+VV +AK Y R + F DL+QEGS+GL + VEKF P G +F++YAYWW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 131 IRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKL 190
IRQ I RA+ +RTIRLP ++ L K+ ++ ++ T E+A ++ + ++
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATPAEIALELELEPAQI 211
Query: 191 EILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPR 250
LS AR P+S+ V +QDT E+ D+ + +PD ++ ++L+R+ NLL L P+
Sbjct: 212 REYLSMARQPISLDVRVGDNQDTELSELLEDSGV-SPDTFITQELLRQDLANLLAELTPQ 270
Query: 251 ERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLAS 300
+R +I LRFG+ DG E SL++IG +S+ERVRQLE +AL L++ A+
Sbjct: 271 QREVISLRFGLSDGKELSLAKIGQRMNISRERVRQLEHQALAHLRRRRAN 320
>I4GV22_MICAE (tr|I4GV22) RNA polymerase sigma factor OS=Microcystis aeruginosa
PCC 9806 GN=rpoD PE=3 SV=1
Length = 416
Score = 229 bits (585), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 120/305 (39%), Positives = 197/305 (64%), Gaps = 7/305 (2%)
Query: 4 WGPETKKLLTFEEESQLISQ-IQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQ 62
WG K++ FE ++I++ + +L ++K L P + EW A +
Sbjct: 115 WG---KQVFLFERIEKIIAEKSEKEPKLSDIKAYLGKTELMAPMLEEWQAKSKEYLSAFK 171
Query: 63 TQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCR 122
+L G R+KEK++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +
Sbjct: 172 RRLYHGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 231
Query: 123 FASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARK 182
F++YA WWIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A K
Sbjct: 232 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATK 291
Query: 183 IGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHAR 241
+ +T++KL + +A++P+S++ + ++D+ + I AD ETP+ V+K L+R
Sbjct: 292 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ETPEDEVSKNLLREDLE 349
Query: 242 NLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASH 301
N+L TL+PRER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ +
Sbjct: 350 NVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNS 409
Query: 302 GLDAY 306
L Y
Sbjct: 410 ILKEY 414
>L8NRV5_MICAE (tr|L8NRV5) RNA polymerase sigma factor OS=Microcystis aeruginosa
DIANCHI905 GN=rpoD2 PE=3 SV=1
Length = 328
Score = 229 bits (585), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 124/290 (42%), Positives = 180/290 (62%), Gaps = 1/290 (0%)
Query: 11 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 70
LLT E+E Q+Q + L E K L Q GREP EWAD V LS L L++G R
Sbjct: 32 LLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPQHLEWADSVNLSENELDRALKTGDR 91
Query: 71 SKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 130
+K K+I ANLR+VV +AK Y R + F DL+QEGS+GL + VEKF P G +F++YAYWW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 131 IRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKL 190
IRQ I RA+ +RTIRLP ++ L K+ ++ ++ T E+A ++ + ++
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATPAEIALELDLEPAQI 211
Query: 191 EILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPR 250
LS AR P+S+ V +QDT E+ D+ + +PD ++ ++L+R+ NLL L P+
Sbjct: 212 REYLSMARQPISLDVRVGDNQDTELSELLEDSGV-SPDTFITQELLRQDLANLLAELTPQ 270
Query: 251 ERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLAS 300
+R +I LRFG+ DG E SL++IG +S+ERVRQLE +AL L++ A+
Sbjct: 271 QREVITLRFGLTDGKELSLAKIGQRMNISRERVRQLEHQALAHLRRRRAN 320
>A8YCV8_MICAE (tr|A8YCV8) RNA polymerase sigma factor OS=Microcystis aeruginosa
PCC 7806 GN=rpoD PE=3 SV=1
Length = 328
Score = 229 bits (585), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 124/290 (42%), Positives = 180/290 (62%), Gaps = 1/290 (0%)
Query: 11 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 70
LLT E+E Q+Q + L E K L Q GREP EWAD V LS L L++G R
Sbjct: 32 LLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPQHLEWADSVNLSENELDRALKTGDR 91
Query: 71 SKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 130
+K K+I ANLR+VV +AK Y R + F DL+QEGS+GL + VEKF P G +F++YAYWW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 131 IRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKL 190
IRQ I RA+ +RTIRLP ++ L K+ ++ ++ T E+A ++ + ++
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATPAEIALELDLEPAQI 211
Query: 191 EILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPR 250
LS AR P+S+ V +QDT E+ D+ + +PD ++ ++L+R+ NLL L P+
Sbjct: 212 REYLSMARQPISLDVRVGDNQDTELSELLEDSGV-SPDTFITQELLRQDLANLLAELTPQ 270
Query: 251 ERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLAS 300
+R +I LRFG+ DG E SL++IG +S+ERVRQLE +AL L++ A+
Sbjct: 271 QREVITLRFGLTDGKELSLAKIGQRMNISRERVRQLEHQALAHLRRRRAN 320
>I4HZ12_MICAE (tr|I4HZ12) RNA polymerase sigma factor OS=Microcystis aeruginosa
PCC 9808 GN=rpoD PE=3 SV=1
Length = 416
Score = 229 bits (585), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 120/305 (39%), Positives = 196/305 (64%), Gaps = 7/305 (2%)
Query: 4 WGPETKKLLTFEE-ESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQ 62
WG K++ FE E ++ + + +L ++K L P + EW A +
Sbjct: 115 WG---KQVFLFERIEKIIVEKSEKEPKLSDIKAYLGKTELTAPLLEEWLAKSKEYLSAFK 171
Query: 63 TQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCR 122
+L G R+KEK++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +
Sbjct: 172 RRLYHGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 231
Query: 123 FASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARK 182
F++YA WWIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A K
Sbjct: 232 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATK 291
Query: 183 IGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHAR 241
+ +T++KL + +A++P+S++ + ++D+ + I AD ETP+ V+K L+R
Sbjct: 292 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ETPEDEVSKNLLREDLE 349
Query: 242 NLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASH 301
N+L TL+PRER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ +
Sbjct: 350 NVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNS 409
Query: 302 GLDAY 306
L Y
Sbjct: 410 ILKEY 414
>I4GN30_MICAE (tr|I4GN30) RNA polymerase sigma factor OS=Microcystis aeruginosa
PCC 7941 GN=rpoD PE=3 SV=1
Length = 416
Score = 229 bits (585), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 120/305 (39%), Positives = 196/305 (64%), Gaps = 7/305 (2%)
Query: 4 WGPETKKLLTFEE-ESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQ 62
WG K++ FE E ++ + + +L ++K L P + EW A +
Sbjct: 115 WG---KQVFLFERIEKIIVEKSEKEPKLSDIKAYLGKTELTAPLLEEWLAKSKEYLSAFK 171
Query: 63 TQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCR 122
+L G R+KEK++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +
Sbjct: 172 RRLYHGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 231
Query: 123 FASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARK 182
F++YA WWIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A K
Sbjct: 232 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATK 291
Query: 183 IGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHAR 241
+ +T++KL + +A++P+S++ + ++D+ + I AD ETP+ V+K L+R
Sbjct: 292 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ETPEDEVSKNLLREDLE 349
Query: 242 NLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASH 301
N+L TL+PRER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ +
Sbjct: 350 NVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNS 409
Query: 302 GLDAY 306
L Y
Sbjct: 410 ILKEY 414
>I4GB76_MICAE (tr|I4GB76) RNA polymerase sigma factor OS=Microcystis aeruginosa
PCC 9443 GN=rpoD PE=3 SV=1
Length = 416
Score = 229 bits (585), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 120/305 (39%), Positives = 196/305 (64%), Gaps = 7/305 (2%)
Query: 4 WGPETKKLLTFEE-ESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQ 62
WG K++ FE E ++ + + +L ++K L P + EW A +
Sbjct: 115 WG---KQVFLFERIEKIIVEKSEKEPKLSDIKAYLGKTELTAPLLEEWLAKSKEYLSAFK 171
Query: 63 TQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCR 122
+L G R+KEK++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +
Sbjct: 172 RRLYHGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 231
Query: 123 FASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARK 182
F++YA WWIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A K
Sbjct: 232 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATK 291
Query: 183 IGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHAR 241
+ +T++KL + +A++P+S++ + ++D+ + I AD ETP+ V+K L+R
Sbjct: 292 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ETPEDEVSKNLLREDLE 349
Query: 242 NLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASH 301
N+L TL+PRER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ +
Sbjct: 350 NVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNS 409
Query: 302 GLDAY 306
L Y
Sbjct: 410 ILKEY 414
>I4FFA4_MICAE (tr|I4FFA4) RNA polymerase sigma factor OS=Microcystis aeruginosa
PCC 9432 GN=rpoD PE=3 SV=1
Length = 416
Score = 229 bits (585), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 120/305 (39%), Positives = 196/305 (64%), Gaps = 7/305 (2%)
Query: 4 WGPETKKLLTFEE-ESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQ 62
WG K++ FE E ++ + + +L ++K L P + EW A +
Sbjct: 115 WG---KQVFLFERIEKIIVEKSEKEPKLSDIKAYLGKTELTAPLLEEWLAKSKEYLSAFK 171
Query: 63 TQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCR 122
+L G R+KEK++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +
Sbjct: 172 RRLYHGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 231
Query: 123 FASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARK 182
F++YA WWIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A K
Sbjct: 232 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATK 291
Query: 183 IGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHAR 241
+ +T++KL + +A++P+S++ + ++D+ + I AD ETP+ V+K L+R
Sbjct: 292 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ETPEDEVSKNLLREDLE 349
Query: 242 NLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASH 301
N+L TL+PRER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ +
Sbjct: 350 NVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNS 409
Query: 302 GLDAY 306
L Y
Sbjct: 410 ILKEY 414
>B1PVV9_MICAE (tr|B1PVV9) RNA polymerase sigma factor OS=Microcystis aeruginosa
PCC 7820 GN=rpoD1 PE=3 SV=1
Length = 416
Score = 229 bits (585), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 120/305 (39%), Positives = 196/305 (64%), Gaps = 7/305 (2%)
Query: 4 WGPETKKLLTFEE-ESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQ 62
WG K++ FE E ++ + + +L ++K L P + EW A +
Sbjct: 115 WG---KQVFLFERIEKIIVEKSEKEPKLSDIKAYLGKTELTAPLLEEWLAKSKEYLSAFK 171
Query: 63 TQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCR 122
+L G R+KEK++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +
Sbjct: 172 RRLYHGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 231
Query: 123 FASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARK 182
F++YA WWIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A K
Sbjct: 232 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATK 291
Query: 183 IGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHAR 241
+ +T++KL + +A++P+S++ + ++D+ + I AD ETP+ V+K L+R
Sbjct: 292 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ETPEDEVSKNLLREDLE 349
Query: 242 NLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASH 301
N+L TL+PRER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ +
Sbjct: 350 NVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNS 409
Query: 302 GLDAY 306
L Y
Sbjct: 410 ILKEY 414
>I4H3L6_MICAE (tr|I4H3L6) RNA polymerase sigma factor OS=Microcystis aeruginosa
PCC 9807 GN=rpoD PE=3 SV=1
Length = 416
Score = 229 bits (585), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 120/305 (39%), Positives = 196/305 (64%), Gaps = 7/305 (2%)
Query: 4 WGPETKKLLTFEE-ESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQ 62
WG K++ FE E ++ + + +L ++K L P + EW A +
Sbjct: 115 WG---KQVFLFERIEKIIVEKSEKEPKLSDIKAYLGKTELTAPLLEEWLAKSKEYLSAFK 171
Query: 63 TQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCR 122
+L G R+KEK++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +
Sbjct: 172 RRLYHGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 231
Query: 123 FASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARK 182
F++YA WWIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A K
Sbjct: 232 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATK 291
Query: 183 IGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHAR 241
+ +T++KL + +A++P+S++ + ++D+ + I AD ETP+ V+K L+R
Sbjct: 292 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ETPEDEVSKNLLREDLE 349
Query: 242 NLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASH 301
N+L TL+PRER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ +
Sbjct: 350 NVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNS 409
Query: 302 GLDAY 306
L Y
Sbjct: 410 ILKEY 414
>A8YBI5_MICAE (tr|A8YBI5) RNA polymerase sigma factor OS=Microcystis aeruginosa
PCC 7806 GN=rpoD1 PE=3 SV=1
Length = 416
Score = 229 bits (585), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 120/305 (39%), Positives = 196/305 (64%), Gaps = 7/305 (2%)
Query: 4 WGPETKKLLTFEE-ESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQ 62
WG K++ FE E ++ + + +L ++K L P + EW A +
Sbjct: 115 WG---KQVFLFERIEKIIVEKSEKEPKLSDIKAYLGKTELTAPLLEEWLAKSKEYLSAFK 171
Query: 63 TQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCR 122
+L G R+KEK++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +
Sbjct: 172 RRLYHGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 231
Query: 123 FASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARK 182
F++YA WWIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A K
Sbjct: 232 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATK 291
Query: 183 IGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHAR 241
+ +T++KL + +A++P+S++ + ++D+ + I AD ETP+ V+K L+R
Sbjct: 292 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ETPEDEVSKNLLREDLE 349
Query: 242 NLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASH 301
N+L TL+PRER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ +
Sbjct: 350 NVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNS 409
Query: 302 GLDAY 306
L Y
Sbjct: 410 ILKEY 414
>Q4BYC5_CROWT (tr|Q4BYC5) RNA polymerase sigma factor OS=Crocosphaera watsonii WH
8501 GN=CwatDRAFT_1739 PE=3 SV=1
Length = 328
Score = 229 bits (585), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 120/290 (41%), Positives = 183/290 (63%), Gaps = 1/290 (0%)
Query: 11 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 70
LLT E+E Q+Q + E K L + G+EPT+ EW+ + + AL L G R
Sbjct: 32 LLTHEQEIIYGKQVQKMMNFLEKKEELADKLGKEPTVKEWSKELEIEQKALNQALEQGER 91
Query: 71 SKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 130
+K K+I ANLR+VV +AK Y R + F DL+QEGS+GL + VEKF P G +F++YAYWW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 131 IRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKL 190
IRQ I RA+ SRTIRLP ++ L K+ + ++ ++ T E+A+++ + ++
Sbjct: 152 IRQAITRAIAQQSRTIRLPIHITEKLNKIKKTQRELSQTLGRSATPSEIAQELEIEPSQI 211
Query: 191 EILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPR 250
LS AR P+S+ V +QDT E+ D + +PD+Y+ ++L+R+ RNL+ L P+
Sbjct: 212 REFLSIARQPISLDVRVGDNQDTELSELLEDQGV-SPDLYITQELLRQDLRNLMAELTPQ 270
Query: 251 ERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLAS 300
+R ++ LRFG+EDG E SL++IG +S+ERVRQLE +AL +L++ A+
Sbjct: 271 QRTVLTLRFGLEDGKELSLAKIGKRMNISRERVRQLEHQALAQLRRRRAN 320
>I4FLI6_MICAE (tr|I4FLI6) RNA polymerase sigma factor OS=Microcystis aeruginosa
PCC 9717 GN=rpoD PE=3 SV=1
Length = 416
Score = 229 bits (585), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 120/305 (39%), Positives = 197/305 (64%), Gaps = 7/305 (2%)
Query: 4 WGPETKKLLTFEEESQLISQ-IQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQ 62
WG K++ FE ++I++ + +L ++K L P + EW A +
Sbjct: 115 WG---KQVFLFERIEKIIAEKSEKEPKLSDIKAYLGKTELMAPMLEEWLAKSKEYLSAFK 171
Query: 63 TQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCR 122
+L G R+KEK++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +
Sbjct: 172 RRLYHGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 231
Query: 123 FASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARK 182
F++YA WWIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A K
Sbjct: 232 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATK 291
Query: 183 IGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHAR 241
+ +T++KL + +A++P+S++ + ++D+ + I AD ETP+ V+K L+R
Sbjct: 292 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ETPEDEVSKNLLREDLE 349
Query: 242 NLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASH 301
N+L TL+PRER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ +
Sbjct: 350 NVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNS 409
Query: 302 GLDAY 306
L Y
Sbjct: 410 ILKEY 414
>I4I0R7_MICAE (tr|I4I0R7) RNA polymerase sigma factor OS=Microcystis aeruginosa
PCC 9809 GN=rpoD PE=3 SV=1
Length = 328
Score = 229 bits (585), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 124/290 (42%), Positives = 180/290 (62%), Gaps = 1/290 (0%)
Query: 11 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 70
LLT E+E Q+Q + L E K L Q GREP EWAD V LS L L++G R
Sbjct: 32 LLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPDRLEWADSVNLSENELDRALKTGDR 91
Query: 71 SKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 130
+K K+I ANLR+VV +AK Y R + F DL+QEGS+GL + VEKF P G +F++YAYWW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 131 IRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKL 190
IRQ I RA+ +RTIRLP ++ L K+ ++ ++ T E+A ++ + ++
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATPAEIALELELEPAQI 211
Query: 191 EILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPR 250
LS AR P+S+ V +QDT E+ D+ + +PD ++ ++L+R+ NLL L P+
Sbjct: 212 REYLSMARQPISLDVRVGDNQDTELSELLEDSGV-SPDTFITQELLRQDLANLLAELTPQ 270
Query: 251 ERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLAS 300
+R +I LRFG+ DG E SL++IG +S+ERVRQLE +AL L++ A+
Sbjct: 271 QREVITLRFGLTDGKELSLAKIGQRMNISRERVRQLEHQALAHLRRRRAN 320
>I4GQP9_MICAE (tr|I4GQP9) RNA polymerase sigma factor OS=Microcystis aeruginosa
PCC 9806 GN=rpoD PE=3 SV=1
Length = 328
Score = 229 bits (585), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 124/290 (42%), Positives = 180/290 (62%), Gaps = 1/290 (0%)
Query: 11 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 70
LLT E+E Q+Q + L E K L Q GREP EWAD V LS L L++G R
Sbjct: 32 LLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPDRLEWADSVNLSENELDRALKTGDR 91
Query: 71 SKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 130
+K K+I ANLR+VV +AK Y R + F DL+QEGS+GL + VEKF P G +F++YAYWW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 131 IRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKL 190
IRQ I RA+ +RTIRLP ++ L K+ ++ ++ T E+A ++ + ++
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATPAEIALELELEPAQI 211
Query: 191 EILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPR 250
LS AR P+S+ V +QDT E+ D+ + +PD ++ ++L+R+ NLL L P+
Sbjct: 212 REYLSMARQPISLDVRVGDNQDTELSELLEDSGV-SPDTFITQELLRQDLANLLAELTPQ 270
Query: 251 ERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLAS 300
+R +I LRFG+ DG E SL++IG +S+ERVRQLE +AL L++ A+
Sbjct: 271 QREVITLRFGLTDGKELSLAKIGQRMNISRERVRQLEHQALAHLRRRRAN 320
>B0JU57_MICAN (tr|B0JU57) RNA polymerase sigma factor OS=Microcystis aeruginosa
(strain NIES-843) GN=MAE_14230 PE=3 SV=1
Length = 328
Score = 229 bits (585), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 124/290 (42%), Positives = 180/290 (62%), Gaps = 1/290 (0%)
Query: 11 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 70
LLT E+E Q+Q + L E K L Q GREP EWAD V LS L L++G R
Sbjct: 32 LLTHEQEIIYGKQVQRMMSLLETKEALSKQLGREPDRLEWADSVNLSENELDRALKTGDR 91
Query: 71 SKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 130
+K K+I ANLR+VV +AK Y R + F DL+QEGS+GL + VEKF P G +F++YAYWW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 131 IRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKL 190
IRQ I RA+ +RTIRLP ++ L K+ ++ ++ T E+A ++ + ++
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATPAEIALELELEPAQI 211
Query: 191 EILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPR 250
LS AR P+S+ V +QDT E+ D+ + +PD ++ ++L+R+ NLL L P+
Sbjct: 212 REYLSMARQPISLDVRVGDNQDTELSELLEDSGV-SPDTFITQELLRQDLANLLAELTPQ 270
Query: 251 ERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLAS 300
+R +I LRFG+ DG E SL++IG +S+ERVRQLE +AL L++ A+
Sbjct: 271 QREVITLRFGLTDGKELSLAKIGQRMNISRERVRQLEHQALAHLRRRRAN 320
>M4EPL2_BRARP (tr|M4EPL2) Uncharacterized protein OS=Brassica rapa subsp.
pekinensis GN=Bra030732 PE=4 SV=1
Length = 570
Score = 229 bits (585), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 115/299 (38%), Positives = 185/299 (61%)
Query: 8 TKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRS 67
+ KLLT EE++L IQ+L +LE +++ L + G +PT +WA G+ L+ ++
Sbjct: 268 SSKLLTAREETELSEGIQDLLKLERLQVELTERCGHQPTFGQWASAAGVDQKTLRKRINH 327
Query: 68 GTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYA 127
GT+ K+++I +N+R+V+ +AKNY G G++ QDL+QEG GL++ EKF G +F++YA
Sbjct: 328 GTQCKDRMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYA 387
Query: 128 YWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTV 187
+WWI+Q +R++L SR IRLP ++ ++ EA+K E P EE+A G+++
Sbjct: 388 HWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGQKPKNEEVAEATGLSM 447
Query: 188 DKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTL 247
+L +L A + P S+ Q + + + E+ +D ET + + KQ MR +L +L
Sbjct: 448 KRLMAVLLAPKPPRSLDQKIGINLNLKPSEVISDPEAETSEDILIKQFMREDLDKVLDSL 507
Query: 248 NPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
+ RE+++IR RFG+EDG K+L EIG G+S+ERVRQ+ES A KLK ++ L Y
Sbjct: 508 STREKQVIRWRFGMEDGRMKTLQEIGETMGVSRERVRQIESSAFRKLKNKKRNNHLQQY 566
>K9EWZ9_9CYAN (tr|K9EWZ9) RNA polymerase sigma factor OS=Leptolyngbya sp. PCC
7375 GN=Lepto7375DRAFT_2556 PE=3 SV=1
Length = 328
Score = 229 bits (585), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 120/290 (41%), Positives = 183/290 (63%), Gaps = 1/290 (0%)
Query: 11 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 70
LLT EEE L Q+Q L L+E K +L + G + EW+ G+S L QLR G R
Sbjct: 32 LLTHEEEIVLGKQVQCLMALQETKDKLDEELGHDANRVEWSQAAGISETELVHQLRHGER 91
Query: 71 SKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 130
+K K+I ANLR+VV VAK Y R L F DL+QEG++GL + VEKF P G +F++YAYWW
Sbjct: 92 AKRKMIEANLRLVVAVAKKYQKRNLEFLDLIQEGTLGLERGVEKFDPMKGYKFSTYAYWW 151
Query: 131 IRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKL 190
IRQ I RA+ SRTIRLP ++ L K+ ++ ++ P+ E+ +++ +T +++
Sbjct: 152 IRQAITRAIAQQSRTIRLPIHITEKLNKIKREQRVLAQKLGRSPSVGEIGQELDLTPEQV 211
Query: 191 EILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPR 250
L+ +R P+S+ + +QDT QE+ D + +P+ Y +Q +R+ RN+L L P+
Sbjct: 212 REYLTMSRQPISLDVRIGDNQDTELQELLEDDTV-SPEDYTVQQSLRQDIRNMLTELTPQ 270
Query: 251 ERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLAS 300
++ +I LRFG+ DG + SL+++G G+S+ERVRQLE +AL L++ A+
Sbjct: 271 QKEVINLRFGLIDGTQLSLAKVGQRMGISRERVRQLEQQALKHLRRRKAT 320
>M5VUM6_PRUPE (tr|M5VUM6) Uncharacterized protein OS=Prunus persica
GN=PRUPE_ppa006657mg PE=4 SV=1
Length = 401
Score = 229 bits (584), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 117/300 (39%), Positives = 189/300 (63%), Gaps = 2/300 (0%)
Query: 8 TKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRS 67
T +LLT EE +L IQ L +LE+++ L + G +PT+A+WA G+ L+ ++
Sbjct: 100 TSRLLTANEEIELSEGIQELLKLEKLQEELVQRCGGQPTIAQWAAAAGVDQKTLRKRINY 159
Query: 68 GTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYA 127
G K+K+I +N+R+V+ +AKNY G G++ QDL+Q+G GL++ EKF G +F++YA
Sbjct: 160 GILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQQGCRGLVRGAEKFDASKGFKFSTYA 219
Query: 128 YWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKK-FYNREGNVHPTKEELARKIGVT 186
+WWI+Q +R++L SRTIRLP ++ ++ EAKK Y+ G HP EE+A G++
Sbjct: 220 HWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVREAKKQLYSVNGR-HPNDEEVAEATGLS 278
Query: 187 VDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHT 246
+ +L +L + P S++Q + +Q+ E+ AD ET + + K+ M++ +L +
Sbjct: 279 MKRLAAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEDMLMKKFMKQDLEKVLDS 338
Query: 247 LNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
LN RE++++R RFG+EDG K+L EIG + G+S+ER+RQ+ES A KLK + L Y
Sbjct: 339 LNAREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQY 398
>L7E8N7_MICAE (tr|L7E8N7) RNA polymerase sigma factor OS=Microcystis aeruginosa
TAIHU98 GN=rpoD-2 PE=3 SV=1
Length = 328
Score = 229 bits (584), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 124/290 (42%), Positives = 180/290 (62%), Gaps = 1/290 (0%)
Query: 11 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 70
LLT E+E Q+Q + L E K L Q GREP EWAD V LS L L++G R
Sbjct: 32 LLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPQRLEWADSVNLSENELDRALKTGDR 91
Query: 71 SKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 130
+K K+I ANLR+VV +AK Y R + F DL+QEGS+GL + VEKF P G +F++YAYWW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 131 IRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKL 190
IRQ I RA+ +RTIRLP ++ L K+ ++ ++ T E+A ++ + ++
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATPAEIALELELEPAQI 211
Query: 191 EILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPR 250
LS AR P+S+ V +QDT E+ D+ + +PD ++ ++L+R+ NLL L P+
Sbjct: 212 REYLSMARQPISLDVRVGDNQDTELSELLEDSGV-SPDTFITQELLRQDLANLLAELTPQ 270
Query: 251 ERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLAS 300
+R +I LRFG+ DG E SL++IG +S+ERVRQLE +AL L++ A+
Sbjct: 271 QREVITLRFGLTDGKELSLAKIGQRMNISRERVRQLEHQALAHLRRRRAN 320
>I4HMJ3_MICAE (tr|I4HMJ3) RNA polymerase sigma factor OS=Microcystis aeruginosa
PCC 9808 GN=rpoD PE=3 SV=1
Length = 328
Score = 229 bits (584), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 124/290 (42%), Positives = 180/290 (62%), Gaps = 1/290 (0%)
Query: 11 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 70
LLT E+E Q+Q + L E K L Q GREP EWAD V LS L L++G R
Sbjct: 32 LLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPQRLEWADSVNLSENELDRALKTGDR 91
Query: 71 SKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 130
+K K+I ANLR+VV +AK Y R + F DL+QEGS+GL + VEKF P G +F++YAYWW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 131 IRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKL 190
IRQ I RA+ +RTIRLP ++ L K+ ++ ++ T E+A ++ + ++
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATPAEIALELELEPAQI 211
Query: 191 EILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPR 250
LS AR P+S+ V +QDT E+ D+ + +PD ++ ++L+R+ NLL L P+
Sbjct: 212 REYLSMARQPISLDVRVGDNQDTELSELLEDSGV-SPDTFITQELLRQDLANLLAELTPQ 270
Query: 251 ERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLAS 300
+R +I LRFG+ DG E SL++IG +S+ERVRQLE +AL L++ A+
Sbjct: 271 QREVITLRFGLTDGKELSLAKIGQRMNISRERVRQLEHQALAHLRRRRAN 320
>I4GJA8_MICAE (tr|I4GJA8) RNA polymerase sigma factor OS=Microcystis aeruginosa
PCC 7941 GN=rpoD PE=3 SV=1
Length = 328
Score = 229 bits (584), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 124/290 (42%), Positives = 180/290 (62%), Gaps = 1/290 (0%)
Query: 11 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 70
LLT E+E Q+Q + L E K L Q GREP EWAD V LS L L++G R
Sbjct: 32 LLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPQRLEWADSVNLSENELDRALKTGDR 91
Query: 71 SKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 130
+K K+I ANLR+VV +AK Y R + F DL+QEGS+GL + VEKF P G +F++YAYWW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 131 IRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKL 190
IRQ I RA+ +RTIRLP ++ L K+ ++ ++ T E+A ++ + ++
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATPAEIALELELEPAQI 211
Query: 191 EILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPR 250
LS AR P+S+ V +QDT E+ D+ + +PD ++ ++L+R+ NLL L P+
Sbjct: 212 REYLSMARQPISLDVRVGDNQDTELSELLEDSGV-SPDTFITQELLRQDLANLLAELTPQ 270
Query: 251 ERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLAS 300
+R +I LRFG+ DG E SL++IG +S+ERVRQLE +AL L++ A+
Sbjct: 271 QREVITLRFGLTDGKELSLAKIGQRMNISRERVRQLEHQALAHLRRRRAN 320
>I4FIV5_MICAE (tr|I4FIV5) RNA polymerase sigma factor OS=Microcystis aeruginosa
PCC 9432 GN=rpoD PE=3 SV=1
Length = 328
Score = 229 bits (584), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 124/290 (42%), Positives = 180/290 (62%), Gaps = 1/290 (0%)
Query: 11 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 70
LLT E+E Q+Q + L E K L Q GREP EWAD V LS L L++G R
Sbjct: 32 LLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPQRLEWADSVNLSENELDRALKTGDR 91
Query: 71 SKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 130
+K K+I ANLR+VV +AK Y R + F DL+QEGS+GL + VEKF P G +F++YAYWW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 131 IRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKL 190
IRQ I RA+ +RTIRLP ++ L K+ ++ ++ T E+A ++ + ++
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATPAEIALELELEPAQI 211
Query: 191 EILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPR 250
LS AR P+S+ V +QDT E+ D+ + +PD ++ ++L+R+ NLL L P+
Sbjct: 212 REYLSMARQPISLDVRVGDNQDTELSELLEDSGV-SPDTFITQELLRQDLANLLAELTPQ 270
Query: 251 ERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLAS 300
+R +I LRFG+ DG E SL++IG +S+ERVRQLE +AL L++ A+
Sbjct: 271 QREVITLRFGLTDGKELSLAKIGQRMNISRERVRQLEHQALAHLRRRRAN 320
>I4FPN8_MICAE (tr|I4FPN8) RNA polymerase sigma factor OS=Microcystis aeruginosa
PCC 9717 GN=rpoD PE=3 SV=1
Length = 328
Score = 229 bits (584), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 124/290 (42%), Positives = 180/290 (62%), Gaps = 1/290 (0%)
Query: 11 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 70
LLT E+E Q+Q + L E K L Q GREP EWAD V LS L L++G R
Sbjct: 32 LLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPQRLEWADSVNLSENELDRALKTGDR 91
Query: 71 SKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 130
+K K+I ANLR+VV +AK Y R + F DL+QEGS+GL + VEKF P G +F++YAYWW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 131 IRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKL 190
IRQ I RA+ +RTIRLP ++ L K+ ++ ++ T E+A ++ + ++
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATPAEIALELELEPAQI 211
Query: 191 EILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPR 250
LS AR P+S+ V +QDT E+ D+ + +PD ++ ++L+R+ NLL L P+
Sbjct: 212 REYLSMARQPISLDVRVGDNQDTELSELLEDSGV-SPDTFITQELLRQDLANLLAELTPQ 270
Query: 251 ERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLAS 300
+R +I LRFG+ DG E SL++IG +S+ERVRQLE +AL L++ A+
Sbjct: 271 QREVITLRFGLTDGKELSLAKIGQRMNISRERVRQLEHQALAHLRRRRAN 320
>G7J988_MEDTR (tr|G7J988) RNA polymerase sigma factor rpoD OS=Medicago truncatula
GN=MTR_3g118290 PE=4 SV=1
Length = 572
Score = 229 bits (584), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 116/291 (39%), Positives = 181/291 (62%)
Query: 16 EESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTRSKEKL 75
EE + IQ+L +LE+++ L + G +PT A+WA G+ L+ +L G KEK+
Sbjct: 279 EEIKFSEGIQDLIKLEKLQEDLAEKCGGQPTFAQWATMAGVDQKTLRKRLNYGVFCKEKM 338
Query: 76 IHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWIRQTI 135
I +N+R+V+ VAKNY G G+S QDL+QEG GL++ EK+ G +F++YA+WWI+Q +
Sbjct: 339 IKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFSTYAHWWIKQAV 398
Query: 136 RRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKLEILLS 195
R++L + SRTIRLP ++ K+ EA+K E P EE+A G+++ +L +L
Sbjct: 399 RKSLSVQSRTIRLPFHMVGATYKVKEARKQLYSENGRQPDDEEVAEATGLSMKRLSAVLL 458
Query: 196 AARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPRERRII 255
+ P S++Q V +Q E+ AD ET + + KQ M++ +L +LNPRE+++I
Sbjct: 459 TPKAPRSLEQKVGINQSLKLSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVI 518
Query: 256 RLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
+ RFG++DG K+L EIG + G+S+ER+RQ+ES A KLK + L Y
Sbjct: 519 KWRFGMDDGRMKTLQEIGEMMGVSRERIRQIESCAFRKLKNKKRAKHLQQY 569
>I4IWN2_MICAE (tr|I4IWN2) RNA polymerase sigma factor OS=Microcystis aeruginosa
PCC 9701 GN=rpoD PE=3 SV=1
Length = 328
Score = 229 bits (584), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 124/290 (42%), Positives = 180/290 (62%), Gaps = 1/290 (0%)
Query: 11 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 70
LLT E+E Q+Q + L E K L Q GREP EWAD V LS L L++G R
Sbjct: 32 LLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPDRLEWADSVNLSENELDRALKTGDR 91
Query: 71 SKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 130
+K K+I ANLR+VV +AK Y R + F DL+QEGS+GL + VEKF P G +F++YAYWW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 131 IRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKL 190
IRQ I RA+ +RTIRLP ++ L K+ ++ ++ T E+A ++ + ++
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATPAEIALELELEPAQI 211
Query: 191 EILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPR 250
LS AR P+S+ V +QDT E+ D+ + +PD ++ ++L+R+ NLL L P+
Sbjct: 212 REYLSMARQPISLDVRVGDNQDTELSELLEDSGV-SPDTFITQELLRQDLANLLAELTPQ 270
Query: 251 ERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLAS 300
+R +I LRFG+ DG E SL++IG +S+ERVRQLE +AL L++ A+
Sbjct: 271 QREVITLRFGLTDGKELSLAKIGQRMNISRERVRQLEHQALAHLRRRRAN 320
>I4IAI2_9CHRO (tr|I4IAI2) RNA polymerase sigma factor OS=Microcystis sp. T1-4
GN=rpoD PE=3 SV=1
Length = 416
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 120/305 (39%), Positives = 196/305 (64%), Gaps = 7/305 (2%)
Query: 4 WGPETKKLLTFEE-ESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQ 62
WG K++ FE E ++ + + +L ++K L P + EW A +
Sbjct: 115 WG---KQVFLFERIEKIIVEKSEKEPKLSDIKAYLGKTELTAPLVEEWLAKSKEYLSAFK 171
Query: 63 TQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCR 122
+L G R+KEK++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +
Sbjct: 172 RRLYHGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 231
Query: 123 FASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARK 182
F++YA WWIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A K
Sbjct: 232 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATK 291
Query: 183 IGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHAR 241
+ +T++KL + +A++P+S++ + ++D+ + I AD ETP+ V+K L+R
Sbjct: 292 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ETPEDEVSKNLLREDLE 349
Query: 242 NLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASH 301
N+L TL+PRER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ +
Sbjct: 350 NVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNS 409
Query: 302 GLDAY 306
L Y
Sbjct: 410 ILKEY 414
>I4H4V9_MICAE (tr|I4H4V9) RNA polymerase sigma factor OS=Microcystis aeruginosa
PCC 9807 GN=rpoD PE=3 SV=1
Length = 328
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 124/290 (42%), Positives = 180/290 (62%), Gaps = 1/290 (0%)
Query: 11 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 70
LLT E+E Q+Q + L E K L Q GREP EWAD V LS L L++G R
Sbjct: 32 LLTHEQEIIYGKQVQRMMSLLEAKEGLSKQLGREPQQLEWADSVNLSENELDRALKTGDR 91
Query: 71 SKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 130
+K K+I ANLR+VV +AK Y R + F DL+QEGS+GL + VEKF P G +F++YAYWW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 131 IRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKL 190
IRQ I RA+ +RTIRLP ++ L K+ ++ ++ T E+A ++ + ++
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATPAEIALELELEPAQI 211
Query: 191 EILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPR 250
LS AR P+S+ V +QDT E+ D+ + +PD ++ ++L+R+ NLL L P+
Sbjct: 212 REYLSMARQPISLDVRVGDNQDTELSELLEDSGV-SPDTFITQELLRQDLANLLAELTPQ 270
Query: 251 ERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLAS 300
+R +I LRFG+ DG E SL++IG +S+ERVRQLE +AL L++ A+
Sbjct: 271 QREVITLRFGLTDGKELSLAKIGQRMNISRERVRQLEHQALAHLRRRRAN 320
>Q9MTH3_SINAL (tr|Q9MTH3) Sigma factor 2 (Precursor) OS=Sinapis alba GN=sig2 PE=2
SV=1
Length = 575
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 113/288 (39%), Positives = 181/288 (62%)
Query: 8 TKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRS 67
+ KLLT EE QL IQ+L +LE ++ L + G +PT ++WA G+ L+ ++
Sbjct: 269 SSKLLTAREEQQLSEGIQDLLKLERLQAELTERCGHQPTFSQWASAAGVDKKTLRKRITH 328
Query: 68 GTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYA 127
GT+ K+++I +N+R+V+ +AKNY G G+ FQDL+QEG GL++ EKF G +F++YA
Sbjct: 329 GTQCKDRMIKSNIRLVISIAKNYQGAGMDFQDLVQEGCRGLVRGAEKFDATKGFKFSTYA 388
Query: 128 YWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTV 187
+WWI+Q +R++L SR IRLP ++ ++ EA+K E P EE+A G+++
Sbjct: 389 HWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKQPKNEEVAEATGLSM 448
Query: 188 DKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTL 247
+L +L + + P S+ Q + + + E+ AD ET + + KQ MR+ +L +L
Sbjct: 449 KRLMAVLLSPKPPRSLDQKIGINLNLKPSEVIADPEAETSEDILMKQFMRQDLDKVLDSL 508
Query: 248 NPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLK 295
+ RE+++IR RFG+EDG K+L EIG G+S+ERVRQ+++ A KLK
Sbjct: 509 STREKQVIRWRFGMEDGRMKTLQEIGETMGVSRERVRQIDTSAFRKLK 556
>L8LL46_9CHRO (tr|L8LL46) RNA polymerase sigma factor OS=Gloeocapsa sp. PCC 73106
GN=GLO73106DRAFT_00005290 PE=3 SV=1
Length = 328
Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 121/286 (42%), Positives = 179/286 (62%), Gaps = 1/286 (0%)
Query: 11 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 70
LLT E+E Q+Q + L E K +L Q GRE EWA V + L+ + G R
Sbjct: 32 LLTPEQEISYGKQVQKMMSLIEAKEKLNKQLGREANKQEWAQYVQMDPEELEKTQQKGQR 91
Query: 71 SKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 130
+K K+I ANLR+VV +AK Y R + F DL+QEGS+GL + VEKF P G +F++YAYWW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGFKFSTYAYWW 151
Query: 131 IRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKL 190
IRQ I RA+ RTIRLP ++ L K+ ++ ++ +P+ E+AR++ + ++
Sbjct: 152 IRQAITRAIAQQGRTIRLPIHITEKLNKIKRTQRELSQRLGRNPSPSEIARELELQPAQI 211
Query: 191 EILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPR 250
LS AR P+S+ V +QDT E+ D ++ +PD Y+ ++L+R+ R LL L P+
Sbjct: 212 REYLSVARQPISLDVRVGDNQDTELSELLEDDSV-SPDKYITQELLRQDLRMLLDELTPQ 270
Query: 251 ERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQ 296
++++I LRFG+EDG E SL++IG LS+ERVRQLE +AL L++
Sbjct: 271 QQQVISLRFGLEDGKEMSLAKIGKQLNLSRERVRQLEHQALAHLRK 316
>M0TIC0_MUSAM (tr|M0TIC0) Uncharacterized protein OS=Musa acuminata subsp.
malaccensis PE=4 SV=1
Length = 548
Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 118/288 (40%), Positives = 181/288 (62%)
Query: 8 TKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRS 67
T KLL+ EE +L IQ+L +LE ++ L + G +PT A+WA G+ L+ +L
Sbjct: 247 TSKLLSAVEELELSKGIQDLLKLERLREELVGRNGGQPTFAQWATAAGIDQKTLRKRLND 306
Query: 68 GTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYA 127
GT K+K+I +N+R+V+ +AKNY GLS QDL+QEG GL+K EKF G +F++YA
Sbjct: 307 GTFCKDKMIKSNIRLVISIAKNYQNAGLSLQDLVQEGYRGLVKGAEKFDASKGFKFSTYA 366
Query: 128 YWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTV 187
+WWI+Q +RR+L SRTIRLP ++ ++ EAKK E HP E+A G+++
Sbjct: 367 HWWIKQAVRRSLSEQSRTIRLPFHMVEATYRVREAKKQLYSENGRHPDYVEVAVATGLSM 426
Query: 188 DKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTL 247
++E +L + P S+ Q + +Q+ E+ AD ET + + K+ M+ +L TL
Sbjct: 427 KRVETVLLTPKAPRSLDQKIGINQNLKPSEVMADPEAETSEEILIKKFMKADLNKVLDTL 486
Query: 248 NPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLK 295
NPRE++++R RFG+++ K+L EIG + G+S+ER+RQ+ES A KLK
Sbjct: 487 NPREKQVLRWRFGLDNERIKTLQEIGKLMGVSRERIRQIESCAFRKLK 534
>I4IUY9_MICAE (tr|I4IUY9) RNA polymerase sigma factor OS=Microcystis aeruginosa
PCC 9701 GN=rpoD PE=3 SV=1
Length = 416
Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 120/305 (39%), Positives = 197/305 (64%), Gaps = 7/305 (2%)
Query: 4 WGPETKKLLTFEEESQLISQ-IQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQ 62
WG K++ FE ++I++ + +L ++K L P + EW A +
Sbjct: 115 WG---KQVFLFERIERIIAEKSEKEPKLSDIKAYLGKTELTAPMVEEWLAKSKEYLSAFK 171
Query: 63 TQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCR 122
+L G R+KEK++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +
Sbjct: 172 RRLYHGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 231
Query: 123 FASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARK 182
F++YA WWIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A K
Sbjct: 232 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATK 291
Query: 183 IGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHAR 241
+ +T++KL + +A++P+S++ + ++D+ + I AD ETP+ V+K L+R
Sbjct: 292 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ETPEDEVSKNLLREDLE 349
Query: 242 NLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASH 301
N+L TL+PRER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ +
Sbjct: 350 NVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNS 409
Query: 302 GLDAY 306
L Y
Sbjct: 410 ILKEY 414
>B0JGK3_MICAN (tr|B0JGK3) RNA polymerase sigma factor OS=Microcystis aeruginosa
(strain NIES-843) GN=sigA PE=3 SV=1
Length = 416
Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 120/305 (39%), Positives = 197/305 (64%), Gaps = 7/305 (2%)
Query: 4 WGPETKKLLTFEEESQLISQ-IQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQ 62
WG K++ FE ++I++ + +L ++K L P + EW A +
Sbjct: 115 WG---KQVFLFERIEKIIAEKSEKEPKLSDIKAYLGKTELMAPLVEEWLAKSKEYLSAFK 171
Query: 63 TQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCR 122
+L G R+KEK++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +
Sbjct: 172 RRLYHGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 231
Query: 123 FASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARK 182
F++YA WWIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A K
Sbjct: 232 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATK 291
Query: 183 IGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHAR 241
+ +T++KL + +A++P+S++ + ++D+ + I AD ETP+ V+K L+R
Sbjct: 292 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ETPEDEVSKNLLREDLE 349
Query: 242 NLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASH 301
N+L TL+PRER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ +
Sbjct: 350 NVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNS 409
Query: 302 GLDAY 306
L Y
Sbjct: 410 ILKEY 414
>I4HLE0_MICAE (tr|I4HLE0) RNA polymerase sigma factor OS=Microcystis aeruginosa
PCC 9809 GN=rpoD PE=3 SV=1
Length = 416
Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 120/305 (39%), Positives = 197/305 (64%), Gaps = 7/305 (2%)
Query: 4 WGPETKKLLTFEEESQLISQ-IQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQ 62
WG K++ FE ++I++ + +L ++K L P + EW A +
Sbjct: 115 WG---KQVFLFERIEKIIAEKSEKEPKLSDIKAYLGKTELMAPLVEEWLAKSKEYLSAFK 171
Query: 63 TQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCR 122
+L G R+KEK++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +
Sbjct: 172 RRLYHGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 231
Query: 123 FASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARK 182
F++YA WWIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A K
Sbjct: 232 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATK 291
Query: 183 IGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHAR 241
+ +T++KL + +A++P+S++ + ++D+ + I AD ETP+ V+K L+R
Sbjct: 292 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ETPEDEVSKNLLREDLE 349
Query: 242 NLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASH 301
N+L TL+PRER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ +
Sbjct: 350 NVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNS 409
Query: 302 GLDAY 306
L Y
Sbjct: 410 ILKEY 414
>Q017N3_OSTTA (tr|Q017N3) SigA (ISS) OS=Ostreococcus tauri GN=Ot06g01190 PE=4
SV=1
Length = 525
Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 117/299 (39%), Positives = 194/299 (64%), Gaps = 3/299 (1%)
Query: 11 LLTFEEESQLISQIQNLFRLEEVKIRL--QSQFGREPTMAEWADGVGLSCYALQTQLRSG 68
LL +E +L +IQ+L LE ++ L ++ G E + ++WA GL+ AL+ +L G
Sbjct: 215 LLNAGQEVELAKRIQDLMHLESIRENLIEETGPGVELSESQWAAAAGLNVSALRQRLHDG 274
Query: 69 TRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 128
+K ++I ANLR+VV +AK Y +SFQDL+QEG +GL++ EKF Q G +F++YA+
Sbjct: 275 KAAKNEMIQANLRLVVSIAKKYANTNMSFQDLIQEGCVGLIRGAEKFDFQRGYKFSTYAH 334
Query: 129 WWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVD 188
WWIRQ + R++ SRTIRLP +++ ++ ++ + ++ + PT EE+A ++ ++V+
Sbjct: 335 WWIRQAVTRSISDQSRTIRLPVHLFEIISRISKMEQKFALYNGRPPTLEEIASEMEMSVE 394
Query: 189 KLEILLSAARIPLSMQQTV-WTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTL 247
K+ + AA+ P+S+ QT+ ++ T ++ D E P+ K L++ N+L+TL
Sbjct: 395 KITQIKKAAQAPVSLAQTMGGENKGRTIEDTLIDANAEGPEKVSGKSLLKEDLENVLNTL 454
Query: 248 NPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
NPRER ++RLR+G++DG K+L EIGTVF +++ER+RQ+E++AL KLKQ + L Y
Sbjct: 455 NPRERDVLRLRYGLDDGRVKTLEEIGTVFSVTRERIRQIEAKALRKLKQPSRNQVLQEY 513
>C1MUC7_MICPC (tr|C1MUC7) Predicted protein OS=Micromonas pusilla (strain
CCMP1545) GN=MICPUCDRAFT_47508 PE=4 SV=1
Length = 587
Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 115/291 (39%), Positives = 190/291 (65%), Gaps = 5/291 (1%)
Query: 11 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAE-----WADGVGLSCYALQTQL 65
LLT E+E +L +IQ+L LE V+ +L+ + R +E WA ++ L+ +L
Sbjct: 268 LLTGEQEVELAMRIQDLVYLEGVREQLEEEAKRRKQTSEVSNFDWAIAANVTERELKERL 327
Query: 66 RSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFAS 125
+G R+K ++I ANLR+VV +AK Y + +SFQDL+QEG +GL++ EKF + G +F++
Sbjct: 328 DAGKRAKNQMIQANLRLVVSIAKRYANKSMSFQDLIQEGCVGLIRGAEKFDFKRGYKFST 387
Query: 126 YAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGV 185
YA+WWIRQ + R++ SRTIRLP +++ ++ ++ + ++ + PT EE+A + +
Sbjct: 388 YAHWWIRQAVTRSISDQSRTIRLPVHLFEIISRMSKVERQLVMKYGRDPTTEEIAEVMDM 447
Query: 186 TVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLH 245
TV+K+ + A+ +P+S+ Q+V D T +E D E PD K L++ N+L+
Sbjct: 448 TVEKINQIQKASLVPISLSQSVNDDDSRTVEETLVDDHAEHPDDATGKVLLKEDLENVLN 507
Query: 246 TLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQ 296
TL+PRER ++RLR+G++DG K+L EIG VF +++ER+RQ+E++AL KL+Q
Sbjct: 508 TLSPRERDVLRLRYGMDDGRVKTLEEIGNVFSVTRERIRQIEAKALRKLRQ 558
>G5JAP6_CROWT (tr|G5JAP6) RNA polymerase sigma factor OS=Crocosphaera watsonii WH
0003 GN=CWATWH0003_4508 PE=3 SV=1
Length = 328
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 119/290 (41%), Positives = 183/290 (63%), Gaps = 1/290 (0%)
Query: 11 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 70
LLT E+E Q+Q + E K L + G+EPT+ EW+ + + AL L G R
Sbjct: 32 LLTHEQEIIYGKQVQKMMNFLEKKEELADKLGKEPTVKEWSKELEIEQKALNQALEQGER 91
Query: 71 SKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 130
+K K+I ANLR+VV +AK Y R + F DL+QEGS+GL + VEKF P G +F++YAYWW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 131 IRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKL 190
IRQ I RA+ +RTIRLP ++ L K+ + ++ ++ T E+A+++ + ++
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQTLGRSATPSEIAQELEIEPSQI 211
Query: 191 EILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPR 250
LS AR P+S+ V +QDT E+ D + +PD+Y+ ++L+R+ RNL+ L P+
Sbjct: 212 REFLSIARQPISLDVRVGDNQDTELSELLEDQGV-SPDLYITQELLRQDLRNLMAELTPQ 270
Query: 251 ERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLAS 300
+R ++ LRFG+EDG E SL++IG +S+ERVRQLE +AL +L++ A+
Sbjct: 271 QRTVLTLRFGLEDGKELSLAKIGKRMNISRERVRQLEHQALAQLRRRRAN 320
>B9I6F1_POPTR (tr|B9I6F1) Predicted protein OS=Populus trichocarpa
GN=POPTRDRAFT_834586 PE=4 SV=1
Length = 567
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 112/280 (40%), Positives = 178/280 (63%)
Query: 16 EESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTRSKEKL 75
EE +L IQ+L +LE ++ L+ +FG EP+ A+WA G+ L+ +L G K+K+
Sbjct: 274 EEVELSEGIQDLLKLERIEEELKERFGGEPSFAQWAAAAGVDQLTLRKRLNYGILCKDKM 333
Query: 76 IHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWIRQTI 135
I +N+R+V+ +AKNY G G++ QDL+QEG GL++ EKF G +F++YA+WWI+Q +
Sbjct: 334 IKSNVRLVISIAKNYQGTGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAV 393
Query: 136 RRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKLEILLS 195
R++L SRTIRLP ++ ++ EA+K E HP +E+A G+++ +L +L
Sbjct: 394 RKSLSDRSRTIRLPFHMVDATYRVKEARKQLYSENGRHPDDKEVAEAAGLSMKRLSAVLL 453
Query: 196 AARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPRERRII 255
+ P S+ Q + + D E+TAD ET + + K+ M++ +L +L+PRE +++
Sbjct: 454 TPKAPRSLDQKMGFNMDLKLSEVTADPEAETAEDLLMKEFMKKDLAKVLGSLSPRENQVV 513
Query: 256 RLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLK 295
R RFG+EDG K+L EIG + G+S+ERVRQ+E A KLK
Sbjct: 514 RWRFGMEDGRMKTLQEIGELMGVSRERVRQIELSAFRKLK 553
>I4IFY1_9CHRO (tr|I4IFY1) RNA polymerase sigma factor OS=Microcystis sp. T1-4
GN=rpoD PE=3 SV=1
Length = 328
Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 123/290 (42%), Positives = 180/290 (62%), Gaps = 1/290 (0%)
Query: 11 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 70
LLT E+E Q+Q + L E K L Q GREP +WAD V LS L L++G R
Sbjct: 32 LLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPDRLDWADSVNLSENELDRALKTGDR 91
Query: 71 SKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 130
+K K+I ANLR+VV +AK Y R + F DL+QEGS+GL + VEKF P G +F++YAYWW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 131 IRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKL 190
IRQ I RA+ +RTIRLP ++ L K+ ++ ++ T E+A ++ + ++
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATPAEIALELELEPAQI 211
Query: 191 EILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPR 250
LS AR P+S+ V +QDT E+ D+ + +PD ++ ++L+R+ NLL L P+
Sbjct: 212 REYLSMARQPISLDVRVGDNQDTELSELLEDSGV-SPDTFITQELLRQDLANLLAELTPQ 270
Query: 251 ERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLAS 300
+R +I LRFG+ DG E SL++IG +S+ERVRQLE +AL L++ A+
Sbjct: 271 QREVITLRFGLTDGKELSLAKIGQRMNISRERVRQLEHQALAHLRRRRAN 320
>Q7NHG5_GLOVI (tr|Q7NHG5) RNA polymerase sigma factor OS=Gloeobacter violaceus
(strain PCC 7421) GN=sigA PE=3 SV=1
Length = 400
Score = 227 bits (579), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 121/327 (37%), Positives = 203/327 (62%), Gaps = 32/327 (9%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQ------------------------FGREP 45
+LL +EE +L QI +L LE ++ R+ + G +
Sbjct: 74 RLLRADEEIELARQIADLLTLERLRARMGAAGTDMHSDVADLLGDDDLLTENLLASGDQV 133
Query: 46 TMAE-----WADGVGLSCYALQTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDL 100
T +E WA+ G++ + ++ G R+K+K++ +NLR+VV +AK Y+ RGLSFQDL
Sbjct: 134 TESEQELRRWAEAAGIAYEQFRDRIAYGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 193
Query: 101 LQEGSMGLMKSVEKFKPQAGCRFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLI 160
+QEGS+GL+++ EKF + G +F++YA WWIRQ I RA+ SRTIRLP ++Y + ++
Sbjct: 194 IQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIK 253
Query: 161 EAKKFYNREGNVHPTKEELARKIGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQE-IT 219
+ K ++E PT+EE+A ++ +T++KL + +A++P+S++ + ++D+ + I
Sbjct: 254 KTTKLLSQELGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIE 313
Query: 220 ADTAIETPDVYVAKQLMRRHARNLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLS 279
AD ETP+ VAK L+R +L+TL+PRER ++RLR+G++DG K+L EIG +F ++
Sbjct: 314 ADG--ETPEDKVAKNLLREDLEAVLNTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVT 371
Query: 280 KERVRQLESRALDKLKQCLASHGLDAY 306
+ER+RQ+E++AL KL+ + L Y
Sbjct: 372 RERIRQIEAKALRKLRHPNRNSVLKEY 398
>M0TES6_MUSAM (tr|M0TES6) Uncharacterized protein OS=Musa acuminata subsp.
malaccensis PE=4 SV=1
Length = 548
Score = 227 bits (579), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 121/308 (39%), Positives = 182/308 (59%), Gaps = 9/308 (2%)
Query: 8 TKKLLTFEEESQLISQIQ---------NLFRLEEVKIRLQSQFGREPTMAEWADGVGLSC 58
T +LLT EE +L IQ +L +LE ++ L + G +PT A+WA G+
Sbjct: 238 TSRLLTAAEEVELSEGIQTYSKILFNGDLLKLERLQQDLTERNGCQPTFAQWAAAAGIDQ 297
Query: 59 YALQTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQ 118
L+ +L GT K+K+I +N+R+V+ +AKNY G++ QDL+QEG GL+K EKF
Sbjct: 298 KVLRKRLNYGTFCKDKMITSNIRLVISIAKNYQHAGMNLQDLVQEGCRGLIKGAEKFDAS 357
Query: 119 AGCRFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEE 178
G +F++YA+WWI+Q +R++L SRTIRLP ++ ++ EAKK E HP EE
Sbjct: 358 KGFKFSTYAHWWIKQAVRKSLSEQSRTIRLPFHMVEATYRVREAKKQLYSENGRHPDHEE 417
Query: 179 LARKIGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRR 238
+A G+++ + ++ + P S+ Q + +Q E+ AD ET + + KQ MR
Sbjct: 418 VAEASGLSMKRFAAVMLTPKAPRSLDQKIGINQTLKPSEVIADPDAETSEDILIKQFMRE 477
Query: 239 HARNLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCL 298
+L TLNPRE+R++R RFG+EDG K+L EIG + G+S+ER+RQ+E A KLK
Sbjct: 478 DLNKVLDTLNPREKRVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIEFCAFRKLKSKK 537
Query: 299 ASHGLDAY 306
+ L Y
Sbjct: 538 RTKNLQQY 545
>B7K8N4_CYAP7 (tr|B7K8N4) RNA polymerase sigma factor OS=Cyanothece sp. (strain
PCC 7424) GN=PCC7424_2825 PE=3 SV=1
Length = 328
Score = 227 bits (578), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 118/285 (41%), Positives = 181/285 (63%), Gaps = 1/285 (0%)
Query: 11 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 70
LLT E+E Q+Q + L E K +L + G+EP + EWA+ V +S L ++ G R
Sbjct: 32 LLTHEQEIVYGKQVQKMMTLLEKKDQLAIELGKEPNLTEWANQVQMSEEELNRAIQQGKR 91
Query: 71 SKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 130
+K K+I ANLR+VV +AK Y R + F DL+QEGS+GL + VEKF P G +F++YAYWW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 131 IRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKL 190
IRQ I RA+ +RTIRLP ++ L K+ + ++ +++ T E+A+ + + ++
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQQLGRSATPAEIAKALDLEPAQI 211
Query: 191 EILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPR 250
LS +R P+S+ V +QDT E+ D I +PD Y+ ++LMR+ +LL L P+
Sbjct: 212 REFLSMSRQPISLDVRVGDNQDTELSELLEDEGI-SPDNYITQELMRQDLHDLLAELTPQ 270
Query: 251 ERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLK 295
+R ++ LRFG++DG E SL++IG +S+ERVRQLE +AL +L+
Sbjct: 271 QREVLSLRFGLQDGKELSLAKIGQRMNISRERVRQLEHQALSQLR 315
>B8C130_THAPS (tr|B8C130) RNA polymerase (Fragment) OS=Thalassiosira pseudonana
GN=THAPSDRAFT_33682 PE=4 SV=1
Length = 318
Score = 226 bits (576), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 126/305 (41%), Positives = 190/305 (62%), Gaps = 6/305 (1%)
Query: 11 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGV--GLSCYALQTQLRSG 68
LL EE L +IQ L + EEV+ L+ Q R PT EWA+ + G++ ++ Q+R
Sbjct: 15 LLQKNEEIILAREIQILIKWEEVREELEGQLLRPPTYQEWANAIEPGMTVTQIKKQIRRS 74
Query: 69 TRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 128
R+K L +NLR+V+ +AK Y GRGL+ QDL QEG++GL ++ EKF P+ G RF++YA
Sbjct: 75 LRAKAALTESNLRLVISIAKRYQGRGLNMQDLCQEGTLGLTRACEKFDPERGFRFSTYAT 134
Query: 129 WWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVD 188
WWI+Q I RA+ +RTIRLP +++ L + +A++ E TKEE+A K+G+ D
Sbjct: 135 WWIKQGIMRAIADQARTIRLPVHIHDQLSIVRKAERDLQNELGRDATKEEVAAKVGMKPD 194
Query: 189 KLEILLSAARIPLSMQQ---TVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLH 245
K+E L A+ +SM+Q T +++ T Q+ D + D+ + L R L+
Sbjct: 195 KIEFLKRASVGSISMEQELGTSGSERSFTIQDTLGDPDQKPVDMAQYRMLQDDVGR-LIC 253
Query: 246 TLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDA 305
TLN RE+ +IR+RFG++DG K+L EIG F +++ER+RQ+E+RAL KL+Q +H +
Sbjct: 254 TLNAREQAVIRMRFGLDDGKAKTLEEIGKKFSVTRERIRQIEARALHKLRQPYRNHTVKC 313
Query: 306 YANLL 310
YAN L
Sbjct: 314 YANEL 318
>L8AT57_9SYNC (tr|L8AT57) RNA polymerase sigma factor OS=Synechocystis sp. PCC
6803 GN=rpoD PE=3 SV=1
Length = 328
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 119/285 (41%), Positives = 178/285 (62%), Gaps = 1/285 (0%)
Query: 11 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 70
LLT E+E L Q+Q + L E K L + GREP+ EWA+ LS L L G R
Sbjct: 32 LLTHEQEIILGKQVQQMMALLEHKKALADRLGREPSDPEWAEAADLSVTKLHRYLGQGER 91
Query: 71 SKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 130
+K K+I ANLR+VV +AK Y R + F DL+QEGS+GL + VEKF P G +F++YAYWW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 131 IRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKL 190
IRQ I RA+ RTIRLP ++ L K+ + ++ +++ T E+A+ + + ++
Sbjct: 152 IRQAITRAIAQQGRTIRLPIHITEKLNKIKKTQRELSQQLGRSATPAEVAKALEIDPSQI 211
Query: 191 EILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPR 250
LS +R P+S+ V +QDT E+ D + +PD Y+ ++ MR+ +NLL L P+
Sbjct: 212 REYLSLSRQPISLDVRVGDNQDTELSELLEDEGV-SPDAYITQESMRQDLQNLLAELTPQ 270
Query: 251 ERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLK 295
++ ++ +RFG+ DG E SL++IG +S+ERVRQLE++AL +LK
Sbjct: 271 QQAVLTMRFGLNDGQELSLAKIGQHLNISRERVRQLENQALAQLK 315
>Q4C7J7_CROWT (tr|Q4C7J7) RNA polymerase sigma factor OS=Crocosphaera watsonii WH
8501 GN=CwatDRAFT_5683 PE=3 SV=1
Length = 414
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 118/301 (39%), Positives = 193/301 (64%), Gaps = 26/301 (8%)
Query: 27 LFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYA--------------------LQTQLR 66
+F+ E ++ RL SQ +EP +W+D V A + +L
Sbjct: 117 IFQWENIEQRLCSQKNKEP---KWSDIVAELNKAEIISDLEKTWKQQSKAYLPKFKRRLY 173
Query: 67 SGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASY 126
G R+K+K++H+NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++Y
Sbjct: 174 LGRRAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTY 233
Query: 127 AYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVT 186
A WWIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A ++ +T
Sbjct: 234 ATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIATRMEMT 293
Query: 187 VDKLEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLLH 245
++KL + +A++P+S++ + ++D+ + I AD ETP+ V+K L+R N+L
Sbjct: 294 IEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ETPEDEVSKNLLREDLENVLD 351
Query: 246 TLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDA 305
TL+PRER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L
Sbjct: 352 TLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKE 411
Query: 306 Y 306
Y
Sbjct: 412 Y 412
>G5JAB0_CROWT (tr|G5JAB0) RNA polymerase sigma factor OS=Crocosphaera watsonii WH
0003 GN=CWATWH0003_4374 PE=3 SV=1
Length = 414
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 118/301 (39%), Positives = 193/301 (64%), Gaps = 26/301 (8%)
Query: 27 LFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYA--------------------LQTQLR 66
+F+ E ++ RL SQ +EP +W+D V A + +L
Sbjct: 117 IFQWENIEQRLCSQKNKEP---KWSDIVAELNKAEIISDLEKTWKQQSKAYLPKFKRRLY 173
Query: 67 SGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASY 126
G R+K+K++H+NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++Y
Sbjct: 174 LGRRAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTY 233
Query: 127 AYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVT 186
A WWIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A ++ +T
Sbjct: 234 ATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIATRMEMT 293
Query: 187 VDKLEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLLH 245
++KL + +A++P+S++ + ++D+ + I AD ETP+ V+K L+R N+L
Sbjct: 294 IEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ETPEDEVSKNLLREDLENVLD 351
Query: 246 TLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDA 305
TL+PRER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L
Sbjct: 352 TLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKE 411
Query: 306 Y 306
Y
Sbjct: 412 Y 412
>Q55525_SYNY3 (tr|Q55525) RNA polymerase sigma factor OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=rpoD PE=3 SV=1
Length = 345
Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 119/285 (41%), Positives = 178/285 (62%), Gaps = 1/285 (0%)
Query: 11 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 70
LLT E+E L Q+Q + L E K L + GREP+ EWA+ LS L L G R
Sbjct: 49 LLTHEQEIILGKQVQQMMALLEHKKALADRLGREPSDPEWAEAADLSVTKLHRYLGQGER 108
Query: 71 SKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 130
+K K+I ANLR+VV +AK Y R + F DL+QEGS+GL + VEKF P G +F++YAYWW
Sbjct: 109 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 168
Query: 131 IRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKL 190
IRQ I RA+ RTIRLP ++ L K+ + ++ +++ T E+A+ + + ++
Sbjct: 169 IRQAITRAIAQQGRTIRLPIHITEKLNKIKKTQRELSQQLGRSATPAEVAKALEIDPSQI 228
Query: 191 EILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPR 250
LS +R P+S+ V +QDT E+ D + +PD Y+ ++ MR+ +NLL L P+
Sbjct: 229 REYLSLSRQPISLDVRVGDNQDTELSELLEDEGV-SPDAYITQESMRQDLQNLLAELTPQ 287
Query: 251 ERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLK 295
++ ++ +RFG+ DG E SL++IG +S+ERVRQLE++AL +LK
Sbjct: 288 QQAVLTMRFGLNDGQELSLAKIGQHLNISRERVRQLENQALAQLK 332
>F7URP3_SYNYG (tr|F7URP3) RNA polymerase sigma factor OS=Synechocystis sp.
(strain PCC 6803 / GT-S) GN=rpoD PE=3 SV=1
Length = 345
Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 119/285 (41%), Positives = 178/285 (62%), Gaps = 1/285 (0%)
Query: 11 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 70
LLT E+E L Q+Q + L E K L + GREP+ EWA+ LS L L G R
Sbjct: 49 LLTHEQEIILGKQVQQMMALLEHKKALADRLGREPSDPEWAEAADLSVTKLHRYLGQGER 108
Query: 71 SKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 130
+K K+I ANLR+VV +AK Y R + F DL+QEGS+GL + VEKF P G +F++YAYWW
Sbjct: 109 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 168
Query: 131 IRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKL 190
IRQ I RA+ RTIRLP ++ L K+ + ++ +++ T E+A+ + + ++
Sbjct: 169 IRQAITRAIAQQGRTIRLPIHITEKLNKIKKTQRELSQQLGRSATPAEVAKALEIDPSQI 228
Query: 191 EILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPR 250
LS +R P+S+ V +QDT E+ D + +PD Y+ ++ MR+ +NLL L P+
Sbjct: 229 REYLSLSRQPISLDVRVGDNQDTELSELLEDEGV-SPDAYITQESMRQDLQNLLAELTPQ 287
Query: 251 ERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLK 295
++ ++ +RFG+ DG E SL++IG +S+ERVRQLE++AL +LK
Sbjct: 288 QQAVLTMRFGLNDGQELSLAKIGQHLNISRERVRQLENQALAQLK 332
>M1MBB9_9SYNC (tr|M1MBB9) RNA polymerase sigma factor OS=Synechocystis sp. PCC
6803 GN=rpoD PE=3 SV=1
Length = 345
Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 119/285 (41%), Positives = 178/285 (62%), Gaps = 1/285 (0%)
Query: 11 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 70
LLT E+E L Q+Q + L E K L + GREP+ EWA+ LS L L G R
Sbjct: 49 LLTHEQEIILGKQVQQMMALLEHKKALADRLGREPSDPEWAEAADLSVTKLHRYLGQGER 108
Query: 71 SKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 130
+K K+I ANLR+VV +AK Y R + F DL+QEGS+GL + VEKF P G +F++YAYWW
Sbjct: 109 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 168
Query: 131 IRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKL 190
IRQ I RA+ RTIRLP ++ L K+ + ++ +++ T E+A+ + + ++
Sbjct: 169 IRQAITRAIAQQGRTIRLPIHITEKLNKIKKTQRELSQQLGRSATPAEVAKALEIDPSQI 228
Query: 191 EILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPR 250
LS +R P+S+ V +QDT E+ D + +PD Y+ ++ MR+ +NLL L P+
Sbjct: 229 REYLSLSRQPISLDVRVGDNQDTELSELLEDEGV-SPDAYITQESMRQDLQNLLAELTPQ 287
Query: 251 ERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLK 295
++ ++ +RFG+ DG E SL++IG +S+ERVRQLE++AL +LK
Sbjct: 288 QQAVLTMRFGLNDGQELSLAKIGQHLNISRERVRQLENQALAQLK 332
>H0PFH3_9SYNC (tr|H0PFH3) RNA polymerase sigma factor OS=Synechocystis sp. PCC
6803 substr. PCC-P GN=rpoD PE=3 SV=1
Length = 345
Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 119/285 (41%), Positives = 178/285 (62%), Gaps = 1/285 (0%)
Query: 11 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 70
LLT E+E L Q+Q + L E K L + GREP+ EWA+ LS L L G R
Sbjct: 49 LLTHEQEIILGKQVQQMMALLEHKKALADRLGREPSDPEWAEAADLSVTKLHRYLGQGER 108
Query: 71 SKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 130
+K K+I ANLR+VV +AK Y R + F DL+QEGS+GL + VEKF P G +F++YAYWW
Sbjct: 109 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 168
Query: 131 IRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKL 190
IRQ I RA+ RTIRLP ++ L K+ + ++ +++ T E+A+ + + ++
Sbjct: 169 IRQAITRAIAQQGRTIRLPIHITEKLNKIKKTQRELSQQLGRSATPAEVAKALEIDPSQI 228
Query: 191 EILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPR 250
LS +R P+S+ V +QDT E+ D + +PD Y+ ++ MR+ +NLL L P+
Sbjct: 229 REYLSLSRQPISLDVRVGDNQDTELSELLEDEGV-SPDAYITQESMRQDLQNLLAELTPQ 287
Query: 251 ERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLK 295
++ ++ +RFG+ DG E SL++IG +S+ERVRQLE++AL +LK
Sbjct: 288 QQAVLTMRFGLNDGQELSLAKIGQHLNISRERVRQLENQALAQLK 332
>H0PAJ0_9SYNC (tr|H0PAJ0) RNA polymerase sigma factor OS=Synechocystis sp. PCC
6803 substr. PCC-N GN=rpoD PE=3 SV=1
Length = 345
Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 119/285 (41%), Positives = 178/285 (62%), Gaps = 1/285 (0%)
Query: 11 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 70
LLT E+E L Q+Q + L E K L + GREP+ EWA+ LS L L G R
Sbjct: 49 LLTHEQEIILGKQVQQMMALLEHKKALADRLGREPSDPEWAEAADLSVTKLHRYLGQGER 108
Query: 71 SKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 130
+K K+I ANLR+VV +AK Y R + F DL+QEGS+GL + VEKF P G +F++YAYWW
Sbjct: 109 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 168
Query: 131 IRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKL 190
IRQ I RA+ RTIRLP ++ L K+ + ++ +++ T E+A+ + + ++
Sbjct: 169 IRQAITRAIAQQGRTIRLPIHITEKLNKIKKTQRELSQQLGRSATPAEVAKALEIDPSQI 228
Query: 191 EILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPR 250
LS +R P+S+ V +QDT E+ D + +PD Y+ ++ MR+ +NLL L P+
Sbjct: 229 REYLSLSRQPISLDVRVGDNQDTELSELLEDEGV-SPDAYITQESMRQDLQNLLAELTPQ 287
Query: 251 ERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLK 295
++ ++ +RFG+ DG E SL++IG +S+ERVRQLE++AL +LK
Sbjct: 288 QQAVLTMRFGLNDGQELSLAKIGQHLNISRERVRQLENQALAQLK 332
>H0NY38_9SYNC (tr|H0NY38) RNA polymerase sigma factor OS=Synechocystis sp. PCC
6803 substr. GT-I GN=rpoD PE=3 SV=1
Length = 345
Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 119/285 (41%), Positives = 178/285 (62%), Gaps = 1/285 (0%)
Query: 11 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 70
LLT E+E L Q+Q + L E K L + GREP+ EWA+ LS L L G R
Sbjct: 49 LLTHEQEIILGKQVQQMMALLEHKKALADRLGREPSDPEWAEAADLSVTKLHRYLGQGER 108
Query: 71 SKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 130
+K K+I ANLR+VV +AK Y R + F DL+QEGS+GL + VEKF P G +F++YAYWW
Sbjct: 109 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 168
Query: 131 IRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKL 190
IRQ I RA+ RTIRLP ++ L K+ + ++ +++ T E+A+ + + ++
Sbjct: 169 IRQAITRAIAQQGRTIRLPIHITEKLNKIKKTQRELSQQLGRSATPAEVAKALEIDPSQI 228
Query: 191 EILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPR 250
LS +R P+S+ V +QDT E+ D + +PD Y+ ++ MR+ +NLL L P+
Sbjct: 229 REYLSLSRQPISLDVRVGDNQDTELSELLEDEGV-SPDAYITQESMRQDLQNLLAELTPQ 287
Query: 251 ERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLK 295
++ ++ +RFG+ DG E SL++IG +S+ERVRQLE++AL +LK
Sbjct: 288 QQAVLTMRFGLNDGQELSLAKIGQHLNISRERVRQLENQALAQLK 332
>B2IZR4_NOSP7 (tr|B2IZR4) RNA polymerase sigma factor OS=Nostoc punctiforme
(strain ATCC 29133 / PCC 73102) GN=Npun_F1499 PE=3 SV=1
Length = 339
Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 120/285 (42%), Positives = 176/285 (61%), Gaps = 1/285 (0%)
Query: 11 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 70
LLT E+E Q+Q + L K L + EPT+ EWAD V L L+ QL G +
Sbjct: 44 LLTREQEVIFAQQVQLMMNLLAAKEELAVKLDHEPTLQEWADRVELGAEVLELQLSQGHQ 103
Query: 71 SKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 130
+K+K+I ANLR+VV VAK Y R L F DL+QEG++GL + V+KF P G +F++YAYWW
Sbjct: 104 AKQKMIQANLRLVVAVAKKYQHRNLEFMDLIQEGTLGLERGVDKFDPALGYKFSTYAYWW 163
Query: 131 IRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKL 190
IRQ I RA+ RTIRLP +V+ L K+ ++ +++ PT E+A + +T ++
Sbjct: 164 IRQGITRAIAQQGRTIRLPIHVFEKLNKIKRVQRELSQQLGRVPTTAEIANALSLTPSQV 223
Query: 191 EILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPR 250
L AR P S++ V QDT Q+I D +P+ Y ++ + + ++LL L+P+
Sbjct: 224 RECLYLARQPFSLEARVGEQQDTELQDILEDDG-PSPEDYAVEESLHQDLQDLLAKLSPQ 282
Query: 251 ERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLK 295
+R I+ LRFG+ DGYE SL++IG G+S+ERVRQ+E +AL L+
Sbjct: 283 QREILTLRFGLTDGYELSLAQIGDRMGISRERVRQIEQKALSLLR 327
>B1WS32_CYAA5 (tr|B1WS32) RNA polymerase sigma factor OS=Cyanothece sp. (strain
ATCC 51142) GN=sigA PE=3 SV=1
Length = 416
Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 124/344 (36%), Positives = 204/344 (59%), Gaps = 49/344 (14%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEW------------------- 50
+LL EEE +L +I +L +LE ++ L + +EPT +W
Sbjct: 73 RLLRAEEEIELARKIADLLQLERIREALWEELDQEPTDEQWGKRIFQWENIEQMLRAQSA 132
Query: 51 ----------------ADGVG-------LSCYA----LQTQLRSGTRSKEKLIHANLRMV 83
AD + L A + +L G ++K+K++H+NLR+V
Sbjct: 133 KDKDPKWSEVTTMLQQADIISDLEKTWKLESKAYLPKFKRRLYLGRKAKDKMVHSNLRLV 192
Query: 84 VHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWIRQTIRRALFLHS 143
V +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA WWIRQ I RA+ S
Sbjct: 193 VSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQS 252
Query: 144 RTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKLEILLSAARIPLSM 203
RTIRLP ++Y + ++ + K ++E PT+EE+A ++ +T++KL + +A++P+S+
Sbjct: 253 RTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIATRMEMTIEKLRFIAKSAQLPISL 312
Query: 204 QQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLLHTLNPRERRIIRLRFGIE 262
+ + ++D+ + I AD ETP+ V+K L+R N+L TL+PRER ++RLR+G++
Sbjct: 313 ETPIGKEEDSRLGDFIEADG--ETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLD 370
Query: 263 DGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 371 DGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEY 414
>G6GVW3_9CHRO (tr|G6GVW3) RNA polymerase sigma factor OS=Cyanothece sp. ATCC
51472 GN=Cy51472DRAFT_3126 PE=3 SV=1
Length = 416
Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 124/344 (36%), Positives = 204/344 (59%), Gaps = 49/344 (14%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEW------------------- 50
+LL EEE +L +I +L +LE ++ L + +EPT +W
Sbjct: 73 RLLRAEEEIELARKIADLLQLERIREALWEELDQEPTDEQWGKRIFQWENIEQMLRAQSA 132
Query: 51 ----------------ADGVG-------LSCYA----LQTQLRSGTRSKEKLIHANLRMV 83
AD + L A + +L G ++K+K++H+NLR+V
Sbjct: 133 KDKDPKWSEVTTMLQQADIISDLEKTWKLESKAYLPKFKRRLYLGRKAKDKMVHSNLRLV 192
Query: 84 VHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWIRQTIRRALFLHS 143
V +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA WWIRQ I RA+ S
Sbjct: 193 VSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQS 252
Query: 144 RTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKLEILLSAARIPLSM 203
RTIRLP ++Y + ++ + K ++E PT+EE+A ++ +T++KL + +A++P+S+
Sbjct: 253 RTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIATRMEMTIEKLRFIAKSAQLPISL 312
Query: 204 QQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLLHTLNPRERRIIRLRFGIE 262
+ + ++D+ + I AD ETP+ V+K L+R N+L TL+PRER ++RLR+G++
Sbjct: 313 ETPIGKEEDSRLGDFIEADG--ETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLD 370
Query: 263 DGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 371 DGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEY 414
>B8HQG4_CYAP4 (tr|B8HQG4) RNA polymerase sigma factor OS=Cyanothece sp. (strain
PCC 7425 / ATCC 29141) GN=Cyan7425_1584 PE=3 SV=1
Length = 327
Score = 223 bits (569), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 118/285 (41%), Positives = 178/285 (62%), Gaps = 1/285 (0%)
Query: 11 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 70
LLT E+E L Q+Q L L E + +L + R PT EWA+ LS L T +R G R
Sbjct: 32 LLTHEQEIVLGKQVQQLMELLEAREKLTTSLDRSPTAEEWAEQANLSVADLNTAVRRGQR 91
Query: 71 SKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 130
+K+K+I ANLR+VV VAK Y R L DL+QEG++GL + VEKF P G +F++YAYWW
Sbjct: 92 AKQKMIEANLRLVVSVAKKYQKRNLELLDLIQEGTLGLERGVEKFDPTRGYKFSTYAYWW 151
Query: 131 IRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKL 190
IRQ I RA+ +RT+RLP ++ L K+ +A++ ++ T E+A+++ + ++
Sbjct: 152 IRQAITRAIAQQARTVRLPIHITEKLNKIKKAQRVLSQRLGRSATPAEIAQELELEPSQI 211
Query: 191 EILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPR 250
L+ AR P+S+ V +QDT +++ D + +P+ Y + +R +LL L P+
Sbjct: 212 REYLTLARQPVSLDLRVGDNQDTELRDLLEDDS-PSPEQYTTGEALRDDVNHLLAELTPQ 270
Query: 251 ERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLK 295
+R ++ LRFG+EDG E SL+++G LS+ERVRQLE +ALD L+
Sbjct: 271 QREVLTLRFGLEDGKELSLAKVGEQLSLSRERVRQLERQALDHLR 315
>F7ULM9_SYNYG (tr|F7ULM9) RNA polymerase sigma factor OS=Synechocystis sp.
(strain PCC 6803 / GT-S) GN=rpoDI PE=3 SV=1
Length = 425
Score = 223 bits (568), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 125/342 (36%), Positives = 200/342 (58%), Gaps = 47/342 (13%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGV--------------- 54
+LL EEE +L QI +L LE ++ L Q R+P+ EW V
Sbjct: 84 RLLRAEEEIELARQIADLLELELIRDNLTLQLERQPSELEWGKQVWKLETAKQRLVGDKK 143
Query: 55 ------GLSCY-----------------------ALQTQLRSGTRSKEKLIHANLRMVVH 85
+ Y A + +L R+K+K++ +NLR+VV
Sbjct: 144 KEPKKKDIDSYLANPDNELSLENEWSQQPNKNFAAFRRRLFLDRRAKDKMVQSNLRLVVS 203
Query: 86 VAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWIRQTIRRALFLHSRT 145
+AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA WWIRQ I RA+ SRT
Sbjct: 204 IAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 263
Query: 146 IRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKLEILLSAARIPLSMQQ 205
IRLP ++Y + ++ + K ++E PT+EE+A K+ +T++KL + +A++P+S++
Sbjct: 264 IRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIAEKMEMTIEKLRFIAKSAQLPISLET 323
Query: 206 TVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLLHTLNPRERRIIRLRFGIEDG 264
+ ++D+ + I AD ETP+ V+K L+R N+L TL+PRER ++RLR+G++DG
Sbjct: 324 PIGKEEDSRLGDFIEADG--ETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDG 381
Query: 265 YEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 382 RMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEY 423
>M1MNH4_9SYNC (tr|M1MNH4) RNA polymerase sigma factor OS=Synechocystis sp. PCC
6803 GN=rpoDI PE=3 SV=1
Length = 425
Score = 223 bits (568), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 125/342 (36%), Positives = 200/342 (58%), Gaps = 47/342 (13%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGV--------------- 54
+LL EEE +L QI +L LE ++ L Q R+P+ EW V
Sbjct: 84 RLLRAEEEIELARQIADLLELELIRDNLTLQLERQPSELEWGKQVWKLETAKQRLVGDKK 143
Query: 55 ------GLSCY-----------------------ALQTQLRSGTRSKEKLIHANLRMVVH 85
+ Y A + +L R+K+K++ +NLR+VV
Sbjct: 144 KEPKKKDIDSYLANPDNELSLENEWSQQPNKNFAAFRRRLFLDRRAKDKMVQSNLRLVVS 203
Query: 86 VAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWIRQTIRRALFLHSRT 145
+AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA WWIRQ I RA+ SRT
Sbjct: 204 IAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 263
Query: 146 IRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKLEILLSAARIPLSMQQ 205
IRLP ++Y + ++ + K ++E PT+EE+A K+ +T++KL + +A++P+S++
Sbjct: 264 IRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIAEKMEMTIEKLRFIAKSAQLPISLET 323
Query: 206 TVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLLHTLNPRERRIIRLRFGIEDG 264
+ ++D+ + I AD ETP+ V+K L+R N+L TL+PRER ++RLR+G++DG
Sbjct: 324 PIGKEEDSRLGDFIEADG--ETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDG 381
Query: 265 YEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 382 RMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEY 423
>H0PJ89_9SYNC (tr|H0PJ89) RNA polymerase sigma factor OS=Synechocystis sp. PCC
6803 substr. PCC-P GN=rpoDI PE=3 SV=1
Length = 425
Score = 223 bits (568), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 125/342 (36%), Positives = 200/342 (58%), Gaps = 47/342 (13%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGV--------------- 54
+LL EEE +L QI +L LE ++ L Q R+P+ EW V
Sbjct: 84 RLLRAEEEIELARQIADLLELELIRDNLTLQLERQPSELEWGKQVWKLETAKQRLVGDKK 143
Query: 55 ------GLSCY-----------------------ALQTQLRSGTRSKEKLIHANLRMVVH 85
+ Y A + +L R+K+K++ +NLR+VV
Sbjct: 144 KEPKKKDIDSYLANPDNELSLENEWSQQPNKNFAAFRRRLFLDRRAKDKMVQSNLRLVVS 203
Query: 86 VAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWIRQTIRRALFLHSRT 145
+AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA WWIRQ I RA+ SRT
Sbjct: 204 IAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 263
Query: 146 IRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKLEILLSAARIPLSMQQ 205
IRLP ++Y + ++ + K ++E PT+EE+A K+ +T++KL + +A++P+S++
Sbjct: 264 IRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIAEKMEMTIEKLRFIAKSAQLPISLET 323
Query: 206 TVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLLHTLNPRERRIIRLRFGIEDG 264
+ ++D+ + I AD ETP+ V+K L+R N+L TL+PRER ++RLR+G++DG
Sbjct: 324 PIGKEEDSRLGDFIEADG--ETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDG 381
Query: 265 YEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 382 RMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEY 423
>H0PED4_9SYNC (tr|H0PED4) RNA polymerase sigma factor OS=Synechocystis sp. PCC
6803 substr. PCC-N GN=rpoDI PE=3 SV=1
Length = 425
Score = 223 bits (568), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 125/342 (36%), Positives = 200/342 (58%), Gaps = 47/342 (13%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGV--------------- 54
+LL EEE +L QI +L LE ++ L Q R+P+ EW V
Sbjct: 84 RLLRAEEEIELARQIADLLELELIRDNLTLQLERQPSELEWGKQVWKLETAKQRLVGDKK 143
Query: 55 ------GLSCY-----------------------ALQTQLRSGTRSKEKLIHANLRMVVH 85
+ Y A + +L R+K+K++ +NLR+VV
Sbjct: 144 KEPKKKDIDSYLANPDNELSLENEWSQQPNKNFAAFRRRLFLDRRAKDKMVQSNLRLVVS 203
Query: 86 VAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWIRQTIRRALFLHSRT 145
+AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA WWIRQ I RA+ SRT
Sbjct: 204 IAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 263
Query: 146 IRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKLEILLSAARIPLSMQQ 205
IRLP ++Y + ++ + K ++E PT+EE+A K+ +T++KL + +A++P+S++
Sbjct: 264 IRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIAEKMEMTIEKLRFIAKSAQLPISLET 323
Query: 206 TVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLLHTLNPRERRIIRLRFGIEDG 264
+ ++D+ + I AD ETP+ V+K L+R N+L TL+PRER ++RLR+G++DG
Sbjct: 324 PIGKEEDSRLGDFIEADG--ETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDG 381
Query: 265 YEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 382 RMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEY 423
>H0P220_9SYNC (tr|H0P220) RNA polymerase sigma factor OS=Synechocystis sp. PCC
6803 substr. GT-I GN=rpoDI PE=3 SV=1
Length = 425
Score = 223 bits (568), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 125/342 (36%), Positives = 200/342 (58%), Gaps = 47/342 (13%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGV--------------- 54
+LL EEE +L QI +L LE ++ L Q R+P+ EW V
Sbjct: 84 RLLRAEEEIELARQIADLLELELIRDNLTLQLERQPSELEWGKQVWKLETAKQRLVGDKK 143
Query: 55 ------GLSCY-----------------------ALQTQLRSGTRSKEKLIHANLRMVVH 85
+ Y A + +L R+K+K++ +NLR+VV
Sbjct: 144 KEPKKKDIDSYLANPDNELSLENEWSQQPNKNFAAFRRRLFLDRRAKDKMVQSNLRLVVS 203
Query: 86 VAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWIRQTIRRALFLHSRT 145
+AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA WWIRQ I RA+ SRT
Sbjct: 204 IAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 263
Query: 146 IRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKLEILLSAARIPLSMQQ 205
IRLP ++Y + ++ + K ++E PT+EE+A K+ +T++KL + +A++P+S++
Sbjct: 264 IRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIAEKMEMTIEKLRFIAKSAQLPISLET 323
Query: 206 TVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLLHTLNPRERRIIRLRFGIEDG 264
+ ++D+ + I AD ETP+ V+K L+R N+L TL+PRER ++RLR+G++DG
Sbjct: 324 PIGKEEDSRLGDFIEADG--ETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDG 381
Query: 265 YEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 382 RMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEY 423
>K9T8P2_9CYAN (tr|K9T8P2) RNA polymerase sigma factor OS=Pleurocapsa sp. PCC 7327
GN=Ple7327_3573 PE=3 SV=1
Length = 328
Score = 223 bits (568), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 119/285 (41%), Positives = 178/285 (62%), Gaps = 1/285 (0%)
Query: 11 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 70
LLT E+E Q+Q + L E K L S+ G EP++ EWA+ V L L + G R
Sbjct: 32 LLTHEQEIVYGKQVQRMMTLLEKKEELASKLGHEPSLTEWANYVQLGEDELNRAIAQGNR 91
Query: 71 SKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 130
+K K+I ANLR+VV +AK Y R + F DL+QEGS+GL + VEKF P G +F++YAYWW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 131 IRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKL 190
IRQ I RA+ +RTIRLP ++ L K+ + ++ ++ T E+A+ + + ++
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELAQQLGRSATPGEIAQALDLEPAQI 211
Query: 191 EILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPR 250
LS AR P+S+ V +QDT ++ D I +PD Y+ ++L+R+ NL+ L P+
Sbjct: 212 REYLSMARQPVSLDVRVGDNQDTELSDLLEDEGI-SPDNYITQELLRQDLNNLMAELTPQ 270
Query: 251 ERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLK 295
+R ++ LRFG+EDG E SL++IG +S+ERVRQLE +AL +L+
Sbjct: 271 QREVLSLRFGLEDGKELSLAKIGQRLNISRERVRQLEHQALAQLR 315
>A3ISY9_9CHRO (tr|A3ISY9) RNA polymerase sigma factor OS=Cyanothece sp. CCY0110
GN=CY0110_28844 PE=3 SV=1
Length = 416
Score = 223 bits (568), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 121/345 (35%), Positives = 202/345 (58%), Gaps = 51/345 (14%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRS-- 67
+LL EEE +L +I +L +LE ++ L + +EPT +W + ++ LR+
Sbjct: 73 RLLRAEEEIELARKIADLLQLERIREALWEELDQEPTDEQWGKRI-FQWENIEQMLRAQS 131
Query: 68 ---------------------------------------------GTRSKEKLIHANLRM 82
G ++K+K++H+NLR+
Sbjct: 132 SKEKEPKWSEVTDMLQKAEIISDLEKTWKLESKAYLPKFKRRLYLGRKAKDKMVHSNLRL 191
Query: 83 VVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWIRQTIRRALFLH 142
VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA WWIRQ I RA+
Sbjct: 192 VVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQ 251
Query: 143 SRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKLEILLSAARIPLS 202
SRTIRLP ++Y + ++ + K ++E PT+EE+A ++ +T++KL + +A++P+S
Sbjct: 252 SRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIATRMEMTIEKLRFIAKSAQLPIS 311
Query: 203 MQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLLHTLNPRERRIIRLRFGI 261
++ + ++D+ + I AD ETP+ V+K L+R N+L TL+PRER ++RLR+G+
Sbjct: 312 LETPIGKEEDSRLGDFIEADG--ETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGL 369
Query: 262 EDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
+DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 370 DDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEY 414
>Q2JIA4_SYNJB (tr|Q2JIA4) RNA polymerase sigma factor OS=Synechococcus sp.
(strain JA-2-3B'a(2-13)) GN=CYB_2734 PE=3 SV=1
Length = 366
Score = 223 bits (568), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 127/299 (42%), Positives = 188/299 (62%), Gaps = 20/299 (6%)
Query: 11 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVG-------LSCYALQT 63
LL +EE L ++Q+ +L ++++RLQ + GR+PT+AEW L+ LQ
Sbjct: 60 LLGRDEEVALAQKVQDYMKLLDLRLRLQKELGRDPTLAEWVAKANQYPEWAQLTPEKLQQ 119
Query: 64 QLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRF 123
R G R+KE +I ANLR+VV VAK Y RGL DL+QEG++GL ++VEKF P+ G RF
Sbjct: 120 IQRIGKRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPKKGYRF 179
Query: 124 ASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKI 183
++YAYWWIRQ I RA+ SRTIRLP ++ L K+ +A++ ++E PT E++A ++
Sbjct: 180 STYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKLSQEKGRTPTIEDIASEL 239
Query: 184 GVTVDKLEILLSAARIP--LSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMR---- 237
+T ++ LL R+P +S++ V D+DT ++ +ET D+ + +MR
Sbjct: 240 EMTPPQVRELL--VRVPRSVSLETKVGKDKDTELGDL-----LETDDISPEETMMREALH 292
Query: 238 RHARNLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQ 296
R + LL L RER +IR+RFG+ DG SL+EIG LS+ERVRQ+E++AL KL+Q
Sbjct: 293 RDLQQLLSDLTSRERDVIRMRFGLGDGRTYSLAEIGRALDLSRERVRQIEAKALQKLRQ 351
>D3EMZ4_UCYNA (tr|D3EMZ4) RNA polymerase sigma factor OS=cyanobacterium UCYN-A
GN=UCYN_00890 PE=3 SV=1
Length = 420
Score = 223 bits (568), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 105/240 (43%), Positives = 171/240 (71%), Gaps = 3/240 (1%)
Query: 68 GTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYA 127
G ++K+K++H+NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F++YA
Sbjct: 181 GRKAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYA 240
Query: 128 YWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTV 187
WWIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A ++ +T+
Sbjct: 241 TWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIATRMEMTI 300
Query: 188 DKLEILLSAARIPLSMQQTVWTDQDTTYQE-ITADTAIETPDVYVAKQLMRRHARNLLHT 246
+KL + +A++P+S++ + ++D+ + I AD ETP+ VAK L+R N+L T
Sbjct: 301 EKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ETPEDEVAKNLLREDLENVLDT 358
Query: 247 LNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
L+PRER ++RLR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L Y
Sbjct: 359 LSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEY 418
>D8FXC8_9CYAN (tr|D8FXC8) RNA polymerase sigma factor OS=Oscillatoria sp. PCC
6506 GN=sigB PE=3 SV=1
Length = 334
Score = 223 bits (568), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 120/285 (42%), Positives = 178/285 (62%), Gaps = 1/285 (0%)
Query: 11 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 70
LLT E+E Q+Q + +L E K L + REPT EWA V LS L+ + G R
Sbjct: 39 LLTREQEIIYGKQVQQMMQLLEAKEELAKELRREPTEVEWALQVQLSEAELKRLMHQGRR 98
Query: 71 SKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 130
+K+K+I ANLR+VV +AK Y R + F DL+QEG++GL + VEKF P G +F++YAYWW
Sbjct: 99 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWW 158
Query: 131 IRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKL 190
IRQ I RA+ H+RTIRLP ++ L K+ + ++ ++ PT E+ + + ++
Sbjct: 159 IRQAITRAIAQHARTIRLPIHITEKLNKIKKVQRELAQQLGRSPTPAEIGSALELHPSQI 218
Query: 191 EILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPR 250
L AR P+S+ V +QDT QE+ D + +PD Y+ +L+R+ NL+ L P+
Sbjct: 219 REYLLMARHPVSLDLRVGDNQDTELQELLEDESA-SPDDYITGELLRQDLNNLMAELTPQ 277
Query: 251 ERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLK 295
+R ++ LRFG+EDG+E SL+++G LS+ERVRQLE +AL L+
Sbjct: 278 QRDVLSLRFGLEDGHEMSLAKVGERLKLSRERVRQLEHQALAHLR 322
>C7QM79_CYAP0 (tr|C7QM79) RNA polymerase sigma factor OS=Cyanothece sp. (strain
PCC 8802) GN=Cyan8802_3567 PE=3 SV=1
Length = 328
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 120/290 (41%), Positives = 180/290 (62%), Gaps = 1/290 (0%)
Query: 11 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 70
LLT E+E Q+Q + L E+K +L G EP+ EWA V L LQ + G R
Sbjct: 32 LLTHEQEIVYGKQVQRMMSLFEMKDQLTQAQGTEPSDKEWAKAVNLKEPELQKTIEQGNR 91
Query: 71 SKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 130
+K K+I ANLR+VV +AK Y R + F DL+QEGS+GL + VEKF P G +F++YAYWW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 131 IRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKL 190
IRQ I RA+ +RTIRLP ++ L K+ + ++ +++ T E+A + + ++
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQKLGRSATPAEIAAVLEIEPSQI 211
Query: 191 EILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPR 250
LS AR P+S+ V +QDT E+ D +PD Y+ ++L+R+ +NL+ L P+
Sbjct: 212 RECLSMARQPISLDVRVGDNQDTELSELLEDHEA-SPDQYITQELLRQDLKNLMEELTPQ 270
Query: 251 ERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLAS 300
+R ++ LRFG+EDG E SL++IG +S+ERVRQLE +AL +L++ A+
Sbjct: 271 QRSVLILRFGLEDGKELSLAKIGKKLNISRERVRQLEHQALAQLRRRRAN 320
>K9Z5T0_CYAAP (tr|K9Z5T0) RNA polymerase sigma factor OS=Cyanobacterium aponinum
(strain PCC 10605) GN=Cyan10605_2465 PE=3 SV=1
Length = 332
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 116/290 (40%), Positives = 181/290 (62%), Gaps = 1/290 (0%)
Query: 11 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 70
LL+ E+E Q+Q + L EVK L+ RE T+ EWA + ++ + G R
Sbjct: 36 LLSHEQEIVFGKQVQQMMSLYEVKENLEKNLEREVTLEEWAQKADKTPNEVKKIIHQGKR 95
Query: 71 SKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 130
+K+K+I ANLR+VV +AK Y R + F DL+QEGS+GL + VEKF P G +F++YAYWW
Sbjct: 96 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGFKFSTYAYWW 155
Query: 131 IRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKL 190
IRQ I RA+ +RTIRLP ++ L K+ + ++ +++ P+ E+A + + ++
Sbjct: 156 IRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQKLGRSPSPNEIAEALQLEPAQI 215
Query: 191 EILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPR 250
S AR P+S+ V +QDT E+ D + +PD Y+ ++LMR+ + LL L P+
Sbjct: 216 REYFSIARQPISLDVKVGDNQDTELSELLEDEGV-SPDNYITQELMRQDLQKLLGELTPQ 274
Query: 251 ERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLAS 300
+++++RLRFG+EDG E SL++IG +S+ERVRQLE +AL L++ +S
Sbjct: 275 QQQVVRLRFGLEDGKELSLAKIGQRMNISRERVRQLEQQALAHLRKKRSS 324
>Q2JS52_SYNJA (tr|Q2JS52) RNA polymerase sigma factor OS=Synechococcus sp.
(strain JA-3-3Ab) GN=rpoD PE=3 SV=1
Length = 404
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 117/302 (38%), Positives = 196/302 (64%), Gaps = 6/302 (1%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFG-----REPTMAEWADGVGLSCYALQTQ 64
+LL +EE +L +I +L LE + + + G E WA+ V +S + +
Sbjct: 102 RLLRADEEIELARKIADLLELERAREAVFQRMGLWSDPEEVPETLWAEEVKMSLPEFRRR 161
Query: 65 LRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFA 124
L G R+KEK++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F+
Sbjct: 162 LHRGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFS 221
Query: 125 SYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIG 184
+YA WWIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A ++
Sbjct: 222 TYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKVTKQLSQELGRRPTEEEIATRME 281
Query: 185 VTVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLL 244
+T++KL + +A++P+S++ + ++D+ + ++ ETP+ VAK L+R ++L
Sbjct: 282 ITIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESEGETPEERVAKVLLREDLESVL 340
Query: 245 HTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLD 304
TL PRER +++LR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L
Sbjct: 341 ETLTPRERDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLK 400
Query: 305 AY 306
Y
Sbjct: 401 EY 402
>B2J7M4_NOSP7 (tr|B2J7M4) RNA polymerase sigma factor OS=Nostoc punctiforme
(strain ATCC 29133 / PCC 73102) GN=Npun_R4091 PE=3 SV=1
Length = 327
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 119/290 (41%), Positives = 180/290 (62%), Gaps = 1/290 (0%)
Query: 11 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 70
LLT E+E Q+Q + L + K L + REP M+EWAD V S +Q + G R
Sbjct: 32 LLTREQEIVYGKQVQQMMTLIDAKEVLAKKLHREPDMSEWADVVQQSETEVQQTVAQGKR 91
Query: 71 SKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 130
+K+K+I ANLR+VV +AK Y R + F DL+QEG++GL + VEKF P G +F++YAYWW
Sbjct: 92 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWW 151
Query: 131 IRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKL 190
IRQ I RA+ RTIRLP ++ L K+ + ++ + PT E+A+++ + ++
Sbjct: 152 IRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQTLGRSPTPAEIAKELELEPAQI 211
Query: 191 EILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPR 250
L+ AR P+S+ V +QDT QE+ D+ +P+ Y ++ +R+ NLL L P+
Sbjct: 212 REYLNMARQPVSLDVKVGDNQDTELQEMLEDSG-PSPEYYTNQEFLRQDLNNLLAELTPQ 270
Query: 251 ERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLAS 300
+R ++ LRFG+EDG E SL+++G LS+ERVRQLE +AL L++ A+
Sbjct: 271 QREVLALRFGLEDGNEMSLAKVGERLNLSRERVRQLEHQALAHLRRRRAN 320
>B4WSK5_9SYNE (tr|B4WSK5) RNA polymerase sigma factor, cyanobacterial RpoD-like
family OS=Synechococcus sp. PCC 7335 GN=S7335_2811 PE=4
SV=1
Length = 298
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 114/286 (39%), Positives = 175/286 (61%), Gaps = 1/286 (0%)
Query: 11 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 70
LLT EEE L Q+Q L L + L REPT EWA G+S L + +G +
Sbjct: 3 LLTHEEEILLGKQVQKLMSLIAIHSSLVDTLDREPTRTEWAAAGGISEAELAAIVTAGEQ 62
Query: 71 SKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 130
+K +++ ANLR+VV VAK Y+ R + DL+QEG++G+ + VEKF P G RF++YAYWW
Sbjct: 63 AKHRMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPSKGYRFSTYAYWW 122
Query: 131 IRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKL 190
IRQ I RA+ SRTIRLP ++ L K+ +A++ + ++ PT E+A+ G T+ ++
Sbjct: 123 IRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQFTQQHGRTPTASEIAQATGFTIKQV 182
Query: 191 EILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPR 250
L +R PLS+ V +QDT ++ D +TPD Y ++ + ++ L P+
Sbjct: 183 REYLDRSRQPLSLDLKVGDNQDTQLGDLLEDDG-QTPDDYATASSLKSDLKRIMADLTPQ 241
Query: 251 ERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQ 296
++++I LRFG+EDG +L++IG + +S+ERVRQ+E AL KL++
Sbjct: 242 QQQVIALRFGLEDGKNMTLAKIGAMLDISRERVRQIEREALTKLRK 287
>C1E4E8_MICSR (tr|C1E4E8) Predicted protein OS=Micromonas sp. (strain RCC299 /
NOUM17) GN=MICPUN_100150 PE=4 SV=1
Length = 595
Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 118/293 (40%), Positives = 189/293 (64%), Gaps = 4/293 (1%)
Query: 8 TKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFG-REPTMAEWADGVGLSCYALQTQLR 66
T LLT EE +L +IQ+L L V RL+ + G +EPT WA ++ L+ +L
Sbjct: 281 TVSLLTGAEEVELAKRIQDLMYLNSVCERLEEENGGKEPTRFMWAIECNITEQELERRLE 340
Query: 67 SGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASY 126
G R+K +I ANLR+VV +AK Y + +SFQDL+QEG +GL++ EKF + G +F++Y
Sbjct: 341 EGKRAKNAMIQANLRLVVSIAKRYANKSMSFQDLIQEGCVGLIRGAEKFDFKRGYKFSTY 400
Query: 127 AYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVT 186
A+WWIRQ + R++ SRTIRLP +++ ++ ++ + ++ + PT EELA + +T
Sbjct: 401 AHWWIRQAVTRSISDQSRTIRLPVHLFEIISRMSKVERQMVLKLGRDPTHEELADAMEMT 460
Query: 187 VDKLEILLSAARIPLSMQQTVWT---DQDTTYQEITADTAIETPDVYVAKQLMRRHARNL 243
V+K++ + A+ +P+S+ QTV + T ++ D E P+ K L++ N+
Sbjct: 461 VEKIKQIKKASLVPISLSQTVNNSNGEDKRTVEDTLIDDYTEHPEGETGKVLLKEDLENV 520
Query: 244 LHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQ 296
L+TLNPRER ++RLR+G++DG K+L EIG VF +++ER+RQ+E++AL KL+Q
Sbjct: 521 LNTLNPRERDVLRLRYGLDDGRVKTLEEIGNVFSVTRERIRQIEAKALRKLRQ 573
>K9SDK2_9CYAN (tr|K9SDK2) RNA polymerase sigma factor OS=Geitlerinema sp. PCC
7407 GN=GEI7407_3773 PE=3 SV=1
Length = 365
Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 118/297 (39%), Positives = 185/297 (62%), Gaps = 1/297 (0%)
Query: 11 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 70
LL +EE +L IQ L +EE++ + + + GR P AE AD +GL+ L+ +L
Sbjct: 67 LLKPDEEVELARHIQQLNEIEELRAQFEEEHGRRPNKAELADALGLTERQLEQRLHRSQV 126
Query: 71 SKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 130
+K K+I +NLR+VV +AK YL RG+ F DL+QEG+MGL ++ EKF P G +F++YAYWW
Sbjct: 127 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 186
Query: 131 IRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKL 190
IRQ I R + +RTIRLP ++ L KL +A++ R+ PT+ ELA + +T ++L
Sbjct: 187 IRQGITRTIANDARTIRLPIHIVEKLNKLKKAQRELRRDLKRPPTEAELATVLEITEEQL 246
Query: 191 EILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRH-ARNLLHTLNP 249
+ LL R LS+ V ++DT ++ D +P+ +++++MR+ A L L
Sbjct: 247 QQLLQVRRQSLSLNVRVGREEDTELVDLLEDNNSRSPEAQMSERMMRQEIAEVLSEVLTE 306
Query: 250 RERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY 306
RE+ I+ LR+GIE G +L E+G +F LS+ERVRQ+++RA+ KL++ + L +
Sbjct: 307 REKEIVCLRYGIETGETHTLEEVGNIFNLSRERVRQIQTRAMRKLRRPQVARRLQGW 363
>K9SH00_9CYAN (tr|K9SH00) RNA polymerase sigma factor OS=Pseudanabaena sp. PCC
7367 GN=Pse7367_0768 PE=3 SV=1
Length = 346
Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 119/290 (41%), Positives = 179/290 (61%), Gaps = 1/290 (0%)
Query: 11 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 70
LLT EEE ++Q L RL E+ L Q R+PT AEWAD GL+ L+ +R GTR
Sbjct: 51 LLTSEEEIIFGKRVQQLMRLSELYEDLAEQLDRQPTQAEWADKAGLNIEELEQIVRDGTR 110
Query: 71 SKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 130
SK K+I ANLR+VV VAK Y R L DL+QEG++GL ++V+KF P G +F++YAYWW
Sbjct: 111 SKRKMIEANLRLVVSVAKKYQKRNLELLDLVQEGTLGLERAVDKFDPTKGFKFSTYAYWW 170
Query: 131 IRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKL 190
IRQ I RA+ +RTIRLP ++ L K+ +A++ ++ T E+A + + +++
Sbjct: 171 IRQAITRAIAQQARTIRLPVHITEKLNKIKKAQRQLSQSLGRVATAAEIADALKLKPEQV 230
Query: 191 EILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPR 250
LS AR P+S+ + +QDT E+ D ++P+ + + +R LL L P+
Sbjct: 231 REFLSMARQPVSLDLRIGDNQDTELAELLEDEG-DSPESFALSESLRDDIAGLLLDLTPK 289
Query: 251 ERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLAS 300
+R ++ +R+G+EDG E SL+ I LS+E+VRQLE +A+D L++ A+
Sbjct: 290 QREVMIMRYGLEDGKEMSLASISKRMELSREQVRQLERQAMDSLRKRKAA 339
>B7K407_CYAP8 (tr|B7K407) RNA polymerase sigma factor OS=Cyanothece sp. (strain
PCC 8801) GN=PCC8801_2539 PE=3 SV=1
Length = 328
Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 119/290 (41%), Positives = 180/290 (62%), Gaps = 1/290 (0%)
Query: 11 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 70
LLT E+E Q+Q + L E+K +L G EP+ EWA V L L+ + G R
Sbjct: 32 LLTHEQEIVYGKQVQRMMSLFEMKDQLTQAQGTEPSDKEWAKAVNLKEPELKKTIEQGNR 91
Query: 71 SKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 130
+K K+I ANLR+VV +AK Y R + F DL+QEGS+GL + VEKF P G +F++YAYWW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 131 IRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKL 190
IRQ I RA+ +RTIRLP ++ L K+ + ++ +++ T E+A + + ++
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQKLGRSATPAEIAAVLEIEPSQI 211
Query: 191 EILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPR 250
LS AR P+S+ V +QDT E+ D +PD Y+ ++L+R+ +NL+ L P+
Sbjct: 212 RECLSMARQPISLDVRVGDNQDTELSELLEDHEA-SPDQYITQELLRQDLKNLMEELTPQ 270
Query: 251 ERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLAS 300
+R ++ LRFG+EDG E SL++IG +S+ERVRQLE +AL +L++ A+
Sbjct: 271 QRSVLILRFGLEDGKELSLAKIGKKLNISRERVRQLEHQALAQLRRRRAN 320
>K9U8Z9_9CYAN (tr|K9U8Z9) RNA polymerase sigma factor OS=Chroococcidiopsis
thermalis PCC 7203 GN=Chro_5941 PE=3 SV=1
Length = 335
Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 121/285 (42%), Positives = 177/285 (62%), Gaps = 1/285 (0%)
Query: 11 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 70
LL+ E+E Q+Q + L K L Q REPT+ EWA+ + LS ALQ QL +G +
Sbjct: 39 LLSHEQEIVFGKQVQQMIALVTAKENLAKQLQREPTLQEWAELMHLSDKALQKQLLAGQQ 98
Query: 71 SKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 130
+K+K+I ANLR+VV VAK Y R L F DL+QEG++GL + VEKF P G RF++YAYWW
Sbjct: 99 AKQKMIEANLRLVVAVAKKYQKRNLDFLDLIQEGTLGLERGVEKFDPTRGFRFSTYAYWW 158
Query: 131 IRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKL 190
IRQ + RA+ SRTIRLP ++ L K+ ++ +++ PT E+A I + +++
Sbjct: 159 IRQGVTRAIAQQSRTIRLPIHMTEKLNKIKRTQRELSQKLGRTPTSIEIAEAIDLQPEQV 218
Query: 191 EILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPR 250
L AR P+S++ + +QDT Q I D + P+ Y ++ +R +N+L L +
Sbjct: 219 RECLLLARHPISLEARIGDEQDTELQNILQDDGL-LPESYAVRESIRESVQNILSKLPTQ 277
Query: 251 ERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLK 295
+R I+ LRFG+ DG E SL++IG G+S+ERVRQLE +A L+
Sbjct: 278 QREILTLRFGLADGNELSLAQIGQRMGISRERVRQLEQQAFSFLR 322
>Q10XF4_TRIEI (tr|Q10XF4) RNA polymerase, sigma 28 subunit OS=Trichodesmium
erythraeum (strain IMS101) GN=Tery_4058 PE=4 SV=1
Length = 319
Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 117/286 (40%), Positives = 176/286 (61%), Gaps = 1/286 (0%)
Query: 11 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 70
LL+ EEE Q+Q L L+E L GREPT+ EWA+ LS LQ +R G R
Sbjct: 24 LLSHEEEILYGKQVQRLTALQEFNQTLAEALGREPTLLEWAEAKELSKSELQRIIREGER 83
Query: 71 SKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 130
+K K++ ANLR+VV VAK Y+ R + DL+QEG++G+ + VEKF P G RF++YAYWW
Sbjct: 84 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 143
Query: 131 IRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKL 190
IRQ I RA+ RTIRLP ++ L K+ + ++ ++ T E+A ++G+T ++
Sbjct: 144 IRQAITRAIAEKGRTIRLPIHITEKLNKIKKVQRQLTQQLGRSATTGEIAEELGLTPKQI 203
Query: 191 EILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPR 250
L AR+PLS+ V +QDT ++ DT +P+ Y + MR +++ L P+
Sbjct: 204 RECLERARLPLSLDLRVGDNQDTELGDLLEDTGA-SPEDYALQSSMRTDLESIMVDLTPQ 262
Query: 251 ERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQ 296
+++++ LRFG+EDG +LS+IG +S+ERVRQ+E AL KL++
Sbjct: 263 QKQVLALRFGLEDGQTMTLSKIGAHLNISRERVRQIEREALSKLRK 308
>Q2JJL6_SYNJB (tr|Q2JJL6) RNA polymerase sigma factor OS=Synechococcus sp.
(strain JA-2-3B'a(2-13)) GN=rpoD PE=3 SV=1
Length = 403
Score = 219 bits (559), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 116/302 (38%), Positives = 193/302 (63%), Gaps = 6/302 (1%)
Query: 10 KLLTFEEESQLISQIQNLFRLEEVKIRLQSQFG-----REPTMAEWADGVGLSCYALQTQ 64
+LL +EE +L +I +L LE + + + G E WA+ V +S + +
Sbjct: 101 RLLRADEEIELARKIADLLELERAREAVFQRMGLWSDPEEVPDTLWAEEVKMSLPEFRRR 160
Query: 65 LRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFA 124
L G R+KEK++ +NLR+VV +AK Y+ RGLSFQDL+QEGS+GL+++ EKF + G +F+
Sbjct: 161 LHRGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFS 220
Query: 125 SYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIG 184
+YA WWIRQ I RA+ SRTIRLP ++Y + ++ + K ++E PT+EE+A ++
Sbjct: 221 TYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKVTKLLSQELGRKPTEEEIATRME 280
Query: 185 VTVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLL 244
+T++KL + +A++P+S++ + ++D+ + ETP+ VAK L+R ++L
Sbjct: 281 ITIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDG-ETPEDRVAKVLLREDLESVL 339
Query: 245 HTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLD 304
TL RER +++LR+G++DG K+L EIG +F +++ER+RQ+E++AL KL+ + L
Sbjct: 340 ETLTARERDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLK 399
Query: 305 AY 306
Y
Sbjct: 400 EY 401
>B2IZW2_NOSP7 (tr|B2IZW2) RNA polymerase sigma factor OS=Nostoc punctiforme
(strain ATCC 29133 / PCC 73102) GN=Npun_F3293 PE=3 SV=1
Length = 332
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 116/297 (39%), Positives = 180/297 (60%), Gaps = 8/297 (2%)
Query: 11 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 70
LLT E+E Q+Q + L K +L Q R+PT EW + + + +L QL G +
Sbjct: 37 LLTHEQEINFAKQVQKMMALLATKEKLAIQLKRQPTQKEWIENINIGEKSLLQQLHQGQK 96
Query: 71 SKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 130
+K+K+I ANLR+VV +AK Y L F DL+QEGS+GL + VEKF P G +F++Y YWW
Sbjct: 97 AKQKMIQANLRLVVSIAKKYQRHNLDFLDLIQEGSLGLERGVEKFDPTKGYKFSTYGYWW 156
Query: 131 IRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKL 190
IRQ I RA+ RTIRLP ++ L K+ ++ ++ PT ++A ++ + ++
Sbjct: 157 IRQAITRAIAEQGRTIRLPIHITEKLNKIKRIQRELTQKLGRTPTAVDIAEELSLDPKQI 216
Query: 191 EILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPR 250
L AR P+S++ V +D+D Q++ D + +P++Y + ++++ +NLL LNP+
Sbjct: 217 RDYLLLARQPVSLELRVGSDKDIELQDMLEDNGL-SPELYADHKFLQQNIQNLLSKLNPQ 275
Query: 251 ERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRAL-------DKLKQCLAS 300
+R+I+ RFG+ DG E SL+EIG G+S+ERVRQ+E +AL DK+ LAS
Sbjct: 276 QRQILTFRFGLTDGNELSLAEIGQRMGISRERVRQIEQQALGSLRRHKDKIHSYLAS 332
>H1WB17_9CYAN (tr|H1WB17) RNA polymerase sigma factor OS=Arthrospira sp. PCC 8005
GN=sigB PE=3 SV=1
Length = 332
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 117/288 (40%), Positives = 183/288 (63%), Gaps = 5/288 (1%)
Query: 11 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 70
LLT EEE ++Q + L E++ L + R+PT AEW+ GLS + + G R
Sbjct: 37 LLTREEEIIYGKKVQQMMSLLEMRDELTKELDRDPTAAEWSAKAGLSESEMTEIMNRGRR 96
Query: 71 SKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 130
+K+K+I ANLR+VV +AK Y R + F DL+QEG++GL + VEKF P G +F++YAYWW
Sbjct: 97 AKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWW 156
Query: 131 IRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKK--FYNREGNVHPTKEELARKIGVTVD 188
IRQ I RA+ +SRTIRLP ++ L K+ + ++ F N PT E+A+ + +
Sbjct: 157 IRQAITRAIAQNSRTIRLPIHITEKLNKIKKVQRELFQQYGRNATPT--EIAKALDLEPS 214
Query: 189 KLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLN 248
++ L A+R P+S+ V +QDT Q++ D + + D YV +QL+R+ ++L+ L
Sbjct: 215 QIRDYLLASRHPVSLDLRVGDNQDTELQDLLEDESA-SADNYVTQQLLRQDLKDLMADLT 273
Query: 249 PRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQ 296
P++R ++ LR+G+ DG E SLS++G +S+ERVRQLE++AL+ L++
Sbjct: 274 PQQREVLTLRYGLNDGKEMSLSKVGVHMNISRERVRQLENQALNHLRR 321
>K9RCV1_9CYAN (tr|K9RCV1) RNA polymerase sigma factor OS=Rivularia sp. PCC 7116
GN=Riv7116_3322 PE=3 SV=1
Length = 327
Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 116/290 (40%), Positives = 180/290 (62%), Gaps = 1/290 (0%)
Query: 11 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 70
LLT E+E Q+Q + +L E K L + GRE ++ EW VGL+ L+ + G R
Sbjct: 32 LLTREQEIIFGKQVQKMMKLVEAKEALAKKLGREVSLEEWTQEVGLAETELKKTVLEGKR 91
Query: 71 SKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 130
+K+K+I ANLR+VV +AK Y R + F DL+QEG++GL + VEKF P G +F++YAYWW
Sbjct: 92 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGALGLERGVEKFDPTRGYKFSTYAYWW 151
Query: 131 IRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKL 190
IRQ I RA+ RTIRLP ++ L K+ + ++ ++ P E+A+++ + ++
Sbjct: 152 IRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQKLGRSPIPSEIAKELDLEPAQI 211
Query: 191 EILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPR 250
L+ AR P+S+ V +QDT QE+ D +P+ Y ++ +R+ NLL L P+
Sbjct: 212 REYLNMARQPVSLDVRVGDNQDTELQEMLEDDG-PSPEYYTTQEFLRQDLNNLLAELTPQ 270
Query: 251 ERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLAS 300
+R+++ LRFG+ DG E SL+++G LS+ERVRQLE +AL L++ A+
Sbjct: 271 QRQVLALRFGLSDGNEMSLAKVGERLSLSRERVRQLEHQALAHLRRRRAN 320
>L8M4M2_9CYAN (tr|L8M4M2) RNA polymerase sigma factor OS=Xenococcus sp. PCC 7305
GN=Xen7305DRAFT_00045350 PE=3 SV=1
Length = 328
Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 119/285 (41%), Positives = 177/285 (62%), Gaps = 1/285 (0%)
Query: 11 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 70
LLT E+E Q+Q + L K L+ Q RE ++ EW++ +S L L+ G R
Sbjct: 33 LLTNEQEIVYGKQVQAMMALLIKKSELEKQLEREISLQEWSESAQISEPELNRLLKLGQR 92
Query: 71 SKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 130
+K K+I ANLR+VV +AK Y R + F DL+QEGS+GL + VEKF P G +F++YAYWW
Sbjct: 93 AKSKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPMKGYKFSTYAYWW 152
Query: 131 IRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKL 190
IRQ I RA+ +RTIRLP ++ L K+ + ++ +++ +P E+A ++ + ++
Sbjct: 153 IRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQKLGRNPNPREIAAELELETSQI 212
Query: 191 EILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPR 250
LS AR P+S+ V +QDT E+ D I +PD Y ++L+R+ NL+ L P
Sbjct: 213 REYLSIARQPISLDVRVGDNQDTELSELLEDDGI-SPDKYATQELLRQDLYNLMADLTPP 271
Query: 251 ERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLK 295
+R +I LRFG+EDG E SL++IG LS+ERVRQLE +AL +L+
Sbjct: 272 QREVISLRFGLEDGKELSLAKIGQRMSLSRERVRQLEHQALAQLR 316
>B4W0H2_9CYAN (tr|B4W0H2) RNA polymerase sigma factor OS=Coleofasciculus
chthonoplastes PCC 7420 GN=MC7420_993 PE=3 SV=1
Length = 352
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 120/290 (41%), Positives = 179/290 (61%), Gaps = 1/290 (0%)
Query: 11 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 70
LLT E+E Q+Q + L E K L REPTM EWAD V L AL+ + GTR
Sbjct: 57 LLTHEQEIVYGKQVQQMMPLLEAKDALAETLEREPTMQEWADHVDLEESALKKIINQGTR 116
Query: 71 SKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 130
+K K+I ANLR+VV +AK Y R + F DL+QEG++GL + VEKF P G +F++YAYWW
Sbjct: 117 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTRGYKFSTYAYWW 176
Query: 131 IRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKL 190
IRQ I RA+ +R IRLP ++ L K+ + ++ ++ + T E+ +++ + ++
Sbjct: 177 IRQAITRAIAQQARAIRLPIHITEKLNKIKKVQRELSQRLGRNATPTEIGQELELEPAQI 236
Query: 191 EILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPR 250
LS AR P+S+ V +QDT ++ D+ TP Y ++ +R+ NLL L P+
Sbjct: 237 REYLSIARQPVSLDVRVGDNQDTELSDLLEDSG-PTPVHYTTQESLRQDLDNLLAELTPQ 295
Query: 251 ERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLAS 300
+R ++ LRFG+EDG E SL+++G LS+ERVRQLE +AL +L++ A+
Sbjct: 296 QREVLALRFGLEDGNELSLAKVGQRLNLSRERVRQLEHQALAQLRRRHAT 345
>K9YNZ9_CYASC (tr|K9YNZ9) RNA polymerase sigma factor OS=Cyanobacterium stanieri
(strain ATCC 29140 / PCC 7202) GN=Cyast_1868 PE=3 SV=1
Length = 328
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 115/290 (39%), Positives = 176/290 (60%), Gaps = 1/290 (0%)
Query: 11 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 70
LL+ E+E Q+Q + L K L REPT+ EWA + L+ + G R
Sbjct: 32 LLSHEQEIVFGKQVQIMMSLYAQKEELAENLDREPTLEEWAQAAEKTPAELKKLIHQGKR 91
Query: 71 SKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 130
+K+K+I ANLR+VV +AK Y R + F DL+QEGS+GL + VEKF P G +F++YAYWW
Sbjct: 92 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGFKFSTYAYWW 151
Query: 131 IRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKL 190
IRQ I RA+ +RTIRLP ++ L K+ + ++ +++ P + E+A + + ++
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQKLGRSPNQSEIANALDLEPSQI 211
Query: 191 EILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPR 250
S AR P+S+ V +QDT E+ D + +PD Y+ ++LMR+ LL L +
Sbjct: 212 REYFSIARQPISLDVKVGDNQDTELSELLEDEGL-SPDKYITQELMRQDLHKLLDELTTQ 270
Query: 251 ERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLAS 300
++ ++RLRFG++DG E SL++IG G+S+ERVRQLE +AL L++ S
Sbjct: 271 QQEVVRLRFGLDDGKELSLAKIGQRMGISRERVRQLEQQALAHLRKKRGS 320
>Q8DM59_THEEB (tr|Q8DM59) Group2 RNA polymerase sigma factor
OS=Thermosynechococcus elongatus (strain BP-1) GN=sigD
PE=4 SV=1
Length = 315
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 114/286 (39%), Positives = 180/286 (62%), Gaps = 1/286 (0%)
Query: 11 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 70
LLT E+E Q+Q L + E++ +L ++ REPT AEWA +S L+T + +G R
Sbjct: 20 LLTHEQEVIYGKQVQQLAAMNEIREKLAAELNREPTRAEWAAAANISEGELETIIENGER 79
Query: 71 SKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 130
+K K++ ANLR+VV VAK Y+ R + DL+QEG++G+ + VEKF P G RF++YAYWW
Sbjct: 80 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 139
Query: 131 IRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKL 190
IRQ I RA+ RTIRLP ++ L K+ +A++ ++ T ELA ++ +T ++
Sbjct: 140 IRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQRLGRAATINELAAELELTPAQV 199
Query: 191 EILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPR 250
L AR PLS+ V +QDT E+ D++I +P+ + + L+R L+ L P+
Sbjct: 200 REYLERARQPLSLDVRVGDNQDTELGELLEDSSI-SPEEFATQSLLRSDLERLMAELTPQ 258
Query: 251 ERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQ 296
+R ++ LRFG+E+G +L+++G + +S+ERVRQ+E AL KL++
Sbjct: 259 QRHVLSLRFGLENGQPLTLAKVGELLNISRERVRQIEREALSKLRK 304
>D5A2C0_SPIPL (tr|D5A2C0) RNA polymerase sigma factor OS=Arthrospira platensis
NIES-39 GN=sigB PE=3 SV=1
Length = 334
Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 116/288 (40%), Positives = 182/288 (63%), Gaps = 5/288 (1%)
Query: 11 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 70
LLT EEE ++Q + L EV+ L + R+PT EW+ GLS + + G R
Sbjct: 39 LLTREEEIIYGKKVQQMMNLLEVRDELTKELDRDPTPEEWSAKAGLSESEMTDIINRGRR 98
Query: 71 SKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 130
+K+K+I ANLR+VV +AK Y R + F DL+QEG++GL + VEKF P G +F++YAYWW
Sbjct: 99 AKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWW 158
Query: 131 IRQTIRRALFLHSRTIRLPENVYTLLGKL--IEAKKFYNREGNVHPTKEELARKIGVTVD 188
IRQ I RA+ +SRTIRLP ++ L K+ ++ + F N PT E+A+ + +
Sbjct: 159 IRQAITRAIAQNSRTIRLPIHITEKLNKIKRVQRELFQQYGRNATPT--EIAKALDLEPS 216
Query: 189 KLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLN 248
++ L A+R P+S+ V +QDT Q++ D + + D YV +QL+R+ ++++ L
Sbjct: 217 QIRDYLLASRHPVSLDLRVGDNQDTELQDLLEDESA-SADSYVTQQLLRQDLKDMMADLT 275
Query: 249 PRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQ 296
P++R ++ LR+G+ DG E SLS++G +S+ERVRQLE++AL+ L++
Sbjct: 276 PQQREVLTLRYGLNDGKEMSLSKVGVQMNISRERVRQLENQALNHLRR 323
>L8N838_9CYAN (tr|L8N838) RNA polymerase sigma factor OS=Pseudanabaena biceps PCC
7429 GN=Pse7429DRAFT_0490 PE=3 SV=1
Length = 336
Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 117/286 (40%), Positives = 181/286 (63%), Gaps = 1/286 (0%)
Query: 11 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 70
LL+ EEE Q+Q + L EV+ ++ R PT EWA+ VGL L + +R GTR
Sbjct: 41 LLSNEEEIVYGKQVQQMMLLFEVQEKIAHNSDRLPTEQEWAEAVGLEPEILHSNIRIGTR 100
Query: 71 SKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 130
+K K+I ANLR+VV VAK Y R L DL+QEG++GL ++V+KF P G +F++YAYWW
Sbjct: 101 AKRKMIEANLRLVVSVAKKYQKRNLELLDLVQEGTLGLERAVDKFDPTKGFKFSTYAYWW 160
Query: 131 IRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKL 190
IRQ I RA+ +RTIRLP ++ L K+ +A++ +++ T E+A ++ + D++
Sbjct: 161 IRQAITRAIAQQARTIRLPVHITEKLNKIKKAQRQLSQDLGRVATVAEIAHELKIKTDQV 220
Query: 191 EILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPR 250
LS +R P+S+ + +QDT E+ DT +PD YV ++ +R ++LL L +
Sbjct: 221 RECLSLSRQPISLDLRIGDNQDTELAELLEDTG-RSPDNYVERESLRTDIQSLLKELPEK 279
Query: 251 ERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQ 296
+R+++ LR+G+EDG E SL+ I LS+E+VRQLE +A+D L++
Sbjct: 280 QRQVMVLRYGLEDGQEMSLASISKRMDLSREQVRQLERQAMDYLRK 325
>K9XMI4_STAC7 (tr|K9XMI4) RNA polymerase sigma factor OS=Stanieria cyanosphaera
(strain ATCC 29371 / PCC 7437) GN=Sta7437_0082 PE=3 SV=1
Length = 327
Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 116/285 (40%), Positives = 180/285 (63%), Gaps = 1/285 (0%)
Query: 11 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 70
LLT E+E Q+Q + L K +L+ + G+E ++ EWA+ V LS L ++ G R
Sbjct: 32 LLTHEQEIVYGKQVQKMMTLLTKKEKLEHKLGKELSLKEWANQVNLSEAELDRAIKQGQR 91
Query: 71 SKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 130
+K K+I ANLR+VV +AK Y R + F DL+QEGS+GL + VEK+ P G +F++YAYWW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKYDPTKGYKFSTYAYWW 151
Query: 131 IRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKL 190
IRQ I RA+ +RTIRLP ++ L K+ + ++ +++ T E+A+++ + ++
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQKLGRSATPAEIAQELELDTAQI 211
Query: 191 EILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPR 250
L+ AR P+S+ V +QDT E+ D +PD Y ++L+R+ +L+ L P+
Sbjct: 212 REYLNVARQPISLDVRVGDNQDTELSELLEDEGT-SPDNYATQELLRQDLLHLMADLTPQ 270
Query: 251 ERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLK 295
+R +I LRFG+EDG E SL++IG LS+ERVRQLE +AL +L+
Sbjct: 271 QREVIALRFGLEDGKELSLAKIGQRMNLSRERVRQLEHQALAQLR 315
>K6DZP2_SPIPL (tr|K6DZP2) RNA polymerase sigma factor OS=Arthrospira platensis
str. Paraca GN=APPUASWS_12956 PE=3 SV=1
Length = 332
Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 116/288 (40%), Positives = 182/288 (63%), Gaps = 5/288 (1%)
Query: 11 LLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTR 70
LLT EEE ++Q + L EV+ L + R+PT EW+ GLS + + G R
Sbjct: 37 LLTREEEIIYGKKVQQMMNLLEVRDELTKELDRDPTPEEWSAKAGLSESEMTDIINRGRR 96
Query: 71 SKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 130
+K+K+I ANLR+VV +AK Y R + F DL+QEG++GL + VEKF P G +F++YAYWW
Sbjct: 97 AKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWW 156
Query: 131 IRQTIRRALFLHSRTIRLPENVYTLLGKL--IEAKKFYNREGNVHPTKEELARKIGVTVD 188
IRQ I RA+ +SRTIRLP ++ L K+ ++ + F N PT E+A+ + +
Sbjct: 157 IRQAITRAIAQNSRTIRLPIHITEKLNKIKRVQRELFQQYGRNATPT--EIAKALDLEPS 214
Query: 189 KLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLN 248
++ L A+R P+S+ V +QDT Q++ D + + D YV +QL+R+ ++++ L
Sbjct: 215 QIRDYLLASRHPVSLDLRVGDNQDTELQDLLEDESA-SADSYVTQQLLRQDLKDMMADLT 273
Query: 249 PRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQ 296
P++R ++ LR+G+ DG E SLS++G +S+ERVRQLE++AL+ L++
Sbjct: 274 PQQREVLTLRYGLNDGKEMSLSKVGVQMNISRERVRQLENQALNHLRR 321