Miyakogusa Predicted Gene
- Lj0g3v0230909.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3S289_LOTJA |
94.4 |
89.4 |
100.0 |
(tr|I3S289) Uncharacterized protein OS=Lotus japonicus PE=4 SV=1 |
| TAIR_pep |
AT3G11500.1 |
93.2 |
89.4 |
97.9 |
| Symbols: | Small nuclear ribonucleoprotein family protein | chr3:3621626-3622474 REVERSE LENGTH=79 |
| Medicago |
Medtr7g104930.1 |
94.0 |
91.5 |
97.9 |
| small nuclear ribonucleoprotein | HC | chr7:42544003-42542017 | 20130731 |
| Soybean |
Glyma19g38130.1 |
93.2 |
89.4 |
97.9 |
|
| LJGI |
gnl|LJGI|TC68860 |
264 |
98.6 |
98.6 |
homologue to UniRef100_Q2HTF4 Cluster: Like-Sm ribonucleoprotein-related, core; n=1; Medicago truncatula|Rep: Like-Sm ribonucleoprotein-related, core - Medicago truncatula (Barrel medic), partial (95%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0230909.1 |
length: 47 aa. |
| IPR001163 |
Ribonucleoprotein LSM domain |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF01423 |
LSM |
3.2e-12 |
9-46 |
| IPR006649 |
Ribonucleoprotein LSM domain, eukaryotic/archaea-type |
| HMMSmart |
SM00651 |
snRNP |
0.0039 |
8-47 |
| IPR010920 |
Like-Sm (LSM) domain |
| superfamily |
SSF50182 |
Sm-like |
1.2e-10 |
3-47 |
| no_ID |
|
| Gene3D |
G3DSA:2.30.30.100 |
no description |
3.8e-13 |
8-46 |
| HMMPanther |
PTHR10553 |
SMALL |
5.9e-22 |
3-47 |
- Wolf-PSORT
Lj0g3v0230909.1 cyto_nucl 6.5, nucl 5, cyto 4, chlo 2, mito 2, chlo_mito 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0230909.1 |
|