Miyakogusa Predicted Gene

Lj0g3v0230909.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0230909.1 Non Characterized Hit- tr|I3S289|I3S289_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=4
SV=1,84.78,1e-16,LSM,Ribonucleoprotein LSM domain; SMALL NUCLEAR
RIBONUCLEOPROTEIN,NULL; no description,NULL; Sm-like,CUFF.15096.1
         (47 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g104930.1 | small nuclear ribonucleoprotein | HC | chr7:42...    94   3e-20
Medtr6g066250.1 | small nuclear ribonucleoprotein | HC | chr6:24...    56   7e-09
Medtr7g065100.1 | u6 snRNA-associated-like-Smprotein | HC | chr7...    50   6e-07
Medtr8g036205.1 | u6 snRNA-associated-like-Smprotein | HC | chr8...    48   2e-06

>Medtr7g104930.1 | small nuclear ribonucleoprotein | HC |
          chr7:42544003-42542017 | 20130731
          Length = 80

 Score = 94.0 bits (232), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 43/47 (91%), Positives = 46/47 (97%)

Query: 1  MSRSGQPPDLKKYMDKNLQIKLNANRMIIGTLRGFDKFMNLVIDNTV 47
          MSRSGQPPDLKKYMDK LQIKLNANRMI+GTLRGFD+FMNLV+DNTV
Sbjct: 1  MSRSGQPPDLKKYMDKQLQIKLNANRMIVGTLRGFDQFMNLVVDNTV 47


>Medtr6g066250.1 | small nuclear ribonucleoprotein | HC |
          chr6:24627973-24628511 | 20130731
          Length = 82

 Score = 56.2 bits (134), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 25/34 (73%), Positives = 30/34 (88%)

Query: 14 MDKNLQIKLNANRMIIGTLRGFDKFMNLVIDNTV 47
          +  +L  KLNANRMI+GTLRGFD+FMNLV+DNTV
Sbjct: 15 LKTSLTFKLNANRMIVGTLRGFDQFMNLVVDNTV 48


>Medtr7g065100.1 | u6 snRNA-associated-like-Smprotein | HC |
          chr7:23716677-23712044 | 20130731
          Length = 99

 Score = 49.7 bits (117), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 29/39 (74%)

Query: 9  DLKKYMDKNLQIKLNANRMIIGTLRGFDKFMNLVIDNTV 47
          DL K++DK +Q+KL   R + GTL+G+D+ +NLV+D  V
Sbjct: 10 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAV 48


>Medtr8g036205.1 | u6 snRNA-associated-like-Smprotein | HC |
          chr8:13385203-13381118 | 20130731
          Length = 124

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 28/39 (71%)

Query: 9  DLKKYMDKNLQIKLNANRMIIGTLRGFDKFMNLVIDNTV 47
          DL K++DK +Q+KL   R + GTL+G+D+ +NL +D  V
Sbjct: 10 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLFLDEAV 48