Miyakogusa Predicted Gene

Lj0g3v0230909.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0230909.1 Non Chatacterized Hit- tr|I3S289|I3S289_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=4
SV=1,84.78,1e-16,LSM,Ribonucleoprotein LSM domain; SMALL NUCLEAR
RIBONUCLEOPROTEIN,NULL; no description,NULL; Sm-like,CUFF.15096.1
         (47 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G11500.1 | Symbols:  | Small nuclear ribonucleoprotein family...    93   4e-20
AT2G23930.1 | Symbols: SNRNP-G | probable small nuclear ribonucl...    92   8e-20
AT2G23930.2 | Symbols: SNRNP-G | probable small nuclear ribonucl...    64   3e-11
AT2G03870.1 | Symbols:  | Small nuclear ribonucleoprotein family...    50   3e-07
AT2G03870.2 | Symbols:  | Small nuclear ribonucleoprotein family...    50   3e-07

>AT3G11500.1 | Symbols:  | Small nuclear ribonucleoprotein family
          protein | chr3:3621626-3622474 REVERSE LENGTH=79
          Length = 79

 Score = 93.2 bits (230), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 42/47 (89%), Positives = 46/47 (97%)

Query: 1  MSRSGQPPDLKKYMDKNLQIKLNANRMIIGTLRGFDKFMNLVIDNTV 47
          MSRSGQPPDLKKYMDK LQIKLNANRM++GTLRGFD+FMNLV+DNTV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTV 47


>AT2G23930.1 | Symbols: SNRNP-G | probable small nuclear
          ribonucleoprotein G | chr2:10182353-10183026 FORWARD
          LENGTH=80
          Length = 80

 Score = 92.0 bits (227), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 42/47 (89%), Positives = 45/47 (95%)

Query: 1  MSRSGQPPDLKKYMDKNLQIKLNANRMIIGTLRGFDKFMNLVIDNTV 47
          MSRSGQPPDLKKYMDK LQIKLNANRM+ GTLRGFD+FMNLV+DNTV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTV 47


>AT2G23930.2 | Symbols: SNRNP-G | probable small nuclear
          ribonucleoprotein G | chr2:10182496-10183026 FORWARD
          LENGTH=67
          Length = 67

 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 29/34 (85%), Positives = 32/34 (94%)

Query: 14 MDKNLQIKLNANRMIIGTLRGFDKFMNLVIDNTV 47
          MDK LQIKLNANRM+ GTLRGFD+FMNLV+DNTV
Sbjct: 1  MDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTV 34


>AT2G03870.1 | Symbols:  | Small nuclear ribonucleoprotein family
          protein | chr2:1180306-1181256 FORWARD LENGTH=99
          Length = 99

 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 29/39 (74%)

Query: 9  DLKKYMDKNLQIKLNANRMIIGTLRGFDKFMNLVIDNTV 47
          DL K++DK +Q+KL   R + GTL+G+D+ +NLV+D  V
Sbjct: 10 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAV 48


>AT2G03870.2 | Symbols:  | Small nuclear ribonucleoprotein family
          protein | chr2:1180306-1181256 FORWARD LENGTH=99
          Length = 99

 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 29/39 (74%)

Query: 9  DLKKYMDKNLQIKLNANRMIIGTLRGFDKFMNLVIDNTV 47
          DL K++DK +Q+KL   R + GTL+G+D+ +NLV+D  V
Sbjct: 10 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAV 48