Miyakogusa Predicted Gene

Lj0g3v0230909.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0230909.1 Non Chatacterized Hit- tr|I3S289|I3S289_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=4
SV=1,84.78,1e-16,LSM,Ribonucleoprotein LSM domain; SMALL NUCLEAR
RIBONUCLEOPROTEIN,NULL; no description,NULL; Sm-like,CUFF.15096.1
         (47 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma19g38130.1                                                        93   6e-20
Glyma03g35490.1                                                        93   6e-20
Glyma11g09150.1                                                        92   1e-19
Glyma05g28190.1                                                        50   8e-07
Glyma08g11160.1                                                        50   8e-07
Glyma20g23640.1                                                        49   1e-06

>Glyma19g38130.1 
          Length = 79

 Score = 93.2 bits (230), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 42/47 (89%), Positives = 46/47 (97%)

Query: 1  MSRSGQPPDLKKYMDKNLQIKLNANRMIIGTLRGFDKFMNLVIDNTV 47
          MSRSGQPPDLKKYMDK LQIKLNANRM++GTLRGFD+FMNLV+DNTV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTV 47


>Glyma03g35490.1 
          Length = 79

 Score = 93.2 bits (230), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 42/47 (89%), Positives = 46/47 (97%)

Query: 1  MSRSGQPPDLKKYMDKNLQIKLNANRMIIGTLRGFDKFMNLVIDNTV 47
          MSRSGQPPDLKKYMDK LQIKLNANRM++GTLRGFD+FMNLV+DNTV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTV 47


>Glyma11g09150.1 
          Length = 79

 Score = 92.0 bits (227), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 42/47 (89%), Positives = 45/47 (95%)

Query: 1  MSRSGQPPDLKKYMDKNLQIKLNANRMIIGTLRGFDKFMNLVIDNTV 47
          MSRSGQPPDLKKYMDK LQIKLN NRMI+GTLRGFD+FMNLV+DNTV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKLNGNRMIVGTLRGFDQFMNLVVDNTV 47


>Glyma05g28190.1 
          Length = 141

 Score = 49.7 bits (117), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 29/39 (74%)

Query: 9  DLKKYMDKNLQIKLNANRMIIGTLRGFDKFMNLVIDNTV 47
          DL K++DK +Q+KL   R + GTL+G+D+ +NLV+D  V
Sbjct: 52 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAV 90


>Glyma08g11160.1 
          Length = 99

 Score = 49.7 bits (117), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 29/39 (74%)

Query: 9  DLKKYMDKNLQIKLNANRMIIGTLRGFDKFMNLVIDNTV 47
          DL K++DK +Q+KL   R + GTL+G+D+ +NLV+D  V
Sbjct: 10 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAV 48


>Glyma20g23640.1 
          Length = 43

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 21/30 (70%), Positives = 26/30 (86%)

Query: 18 LQIKLNANRMIIGTLRGFDKFMNLVIDNTV 47
          L +KLNAN M++GTL GFD+FMNLV+DN V
Sbjct: 1  LAVKLNANHMVVGTLCGFDQFMNLVVDNPV 30