ATXN3L ORF clone pFN21AE5579

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KOP HaloTag ORF List Flexi search

Halotag ORF Clone pFN21AE5579

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Clone info.

Species

human

Clone Name

pFN21AE5579 Sequence (with vector) Restriction Map

Product ID

FHC31286

ORF Sequence

DNA sequence (1065 bp)
Protein sequence (355 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pFN21A Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

Gene

KIEE5579

Symbol

ATXN3L

Alias : MJDL

Description

ataxin 3-like

Original Clone ID

cp95579

Quality control data of this clone

Description

Characterization of the cloned ORF

5'-end(FN21F1)

3'-end(F1KR)

Agarose gel electrophoretic image

5'/3'-end sequences (chromatogram)

N-terminal HaloTag-fusions expressed in HEK293 visualized by HaloTag TMR ligand

Cell image

SDS-PAGE

Features of the cloned ORF sequence

Description

Length: 1065 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 355 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS48080.1 7.1e-111 100.0 ATXN3L CCDS9900.1 3.4e-74 69.8 ATXN3 CCDS32143.1 9.5e-56 65.6 ATXN3 CCDS45154.1 1.7e-51 66.2 ATXN3 CCDS73680.1 2.3e-51 64.1 ATXN3 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition FPrintScan IPR006155 5 28 PR01233 Machado-Joseph disease protein MJD IPR006155 44 65 PR01233 Machado-Joseph disease protein MJD IPR006155 66 85 PR01233 Machado-Joseph disease protein MJD IPR006155 106 125 PR01233 Machado-Joseph disease protein MJD IPR006155 127 147 PR01233 Machado-Joseph disease protein MJD IPR006155 151 170 PR01233 Machado-Joseph disease protein MJD IPR006155 172 197 PR01233 Machado-Joseph disease protein MJD IPR006155 200 223 PR01233 Machado-Joseph disease protein MJD IPR006155 268 291 PR01233 Machado-Joseph disease protein MJD IPR006155 302 324 PR01233 Machado-Joseph disease protein MJD HMMPfam IPR006155 8 167 PF02099 Machado-Joseph disease protein MJD IPR003903 223 239 PF02809 Ubiquitin interacting motif IPR003903 242 257 PF02809 Ubiquitin interacting motif HMMSmart IPR003903 224 243 SM00726 Ubiquitin interacting motif IPR003903 244 261 SM00726 Ubiquitin interacting motif ProfileScan IPR006155 1 180 PS50957 Machado-Joseph disease protein MJD IPR003903 224 243 PS50330 Ubiquitin interacting motif
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_001129467 355 300920 100.0 100.0 NP_004984 361 109150,607047 69.8 100.0 NP_109376 306 109150,607047 65.6 82.5 NP_001121168 346 109150,607047 66.2 100.0 NP_001121169 310 109150,607047 58.4 100.0 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pFN21AE5579 Download

>KIEE5579  1065 bp
ATGGATTTCATCTTTCATGAGAAACAGGAAGGTTTCCTGTGTGCTCAGCACTGTCTGAAC
AATCTATTGCAAGGAGAATATTTTAGCCCTGTGGAATTAGCCTCAATTGCACATCAGCTA
GATGAAGAAGAGAGGATGAGAATGGCAGAAGGAGGAGTCACCAGTGAAGAGTATCTTGCA
TTTTTACAGCAGCCTTCAGAAAACATGGATGATACCGGTTTCTTCTCCATTCAGGTAATA
AGCAATGCCTTGAAGTTCTGGGGTTTAGAGATCATCCATTTCAATAATCCTGAATATCAG
AAGCTCGGCATTGATCCTATAAATGAAAGATCTTTTATATGTAATTATAAACAACACTGG
TTTACTATTAGAAAATTTGGAAAACACTGGTTTAACTTGAATTCTCTCTTGGCGGGTCCA
GAATTAATATCAGATACATGCCTTGCAAATTTCTTGGCTCGATTACAACAACAAGCATAT
TCTGTATTTGTTGTCAAGGGTGATCTGCCAGACTGTGAAGCTGACCAACTCCTGCAGATC
ATCAGTGTCGAAGAGATGGATACACCAAAACTTAATGGAAAAAAATTAGTAAAACAAAAA
GAGCATAGAGTCTATAAAACAGTCCTTGAAAAAGTATCAGAAGAAAGTGATGAGTCTGGA
ACATCAGACCAAGATGAGGAGGATTTTCAGAGGGCCCTTGAACTAAGCCGCCAAGAAACC
AATAGAGAAGATGAACATCTCCGCAGTACTATTGAGTTAAGCATGCAAGGTAGTTCCGGA
AACACATCGCAAGATCTTCCAAAGACATCATGTGTAACTCCTGCTTCAGAACAGCCGAAG
AAAATAAAAGAAGACTATTTTGAAAAGCATCAGCAGGAACAGAAGCAGCAGCAACAACAG
TCAGATCTGCCGGGCCACAGTTCATACCTACACGAAAGGCCAACAACAAGTTCGAGAGCA
ATTGAGAGTGATCTCAGTGATGACATCAGTGAAGGCACAGTACAGGCCGCTGTCGACACC
ATTTTAGAAATTATGAGAAAGAATTTGAAAATCAAAGGGGAAAAA

ORF Protein

Cloned ORF protein sequence for pFN21AE5579 Download

>KIEE5579  355 aa
MDFIFHEKQEGFLCAQHCLNNLLQGEYFSPVELASIAHQLDEEERMRMAEGGVTSEEYLA
FLQQPSENMDDTGFFSIQVISNALKFWGLEIIHFNNPEYQKLGIDPINERSFICNYKQHW
FTIRKFGKHWFNLNSLLAGPELISDTCLANFLARLQQQAYSVFVVKGDLPDCEADQLLQI
ISVEEMDTPKLNGKKLVKQKEHRVYKTVLEKVSEESDESGTSDQDEEDFQRALELSRQET
NREDEHLRSTIELSMQGSSGNTSQDLPKTSCVTPASEQPKKIKEDYFEKHQQEQKQQQQQ
SDLPGHSSYLHERPTTSSRAIESDLSDDISEGTVQAAVDTILEIMRKNLKIKGEK

ORF+Vector

Nucleotide Sequence (with vector) for pFN21AE5579 Download

>pFN21AE5579  5770 bp
TCAATATTGGCCATTAGCCATATTATTCATTGGTTATATAGCATAAATCAATATTGGCTA
TTGGCCATTGCATACGTTGTATCTATATCATAATATGTACATTTATATTGGCTCATGTCC
AATATGACCGCCATGTTGGCATTGATTATTGACTAGTTATTAATAGTAATCAATTACGGG
GTCATTAGTTCATAGCCCATATATGGAGTTCCGCGTTACATAACTTACGGTAAATGGCCC
GCCTGGCTGACCGCCCAACGACCCCCGCCCATTGACGTCAATAATGACGTATGTTCCCAT
AGTAACGCCAATAGGGACTTTCCATTGACGTCAATGGGTGGAGTATTTACGGTAAACTGC
CCACTTGGCAGTACATCAAGTGTATCATATGCCAAGTCCGCCCCCTATTGACGTCAATGA
CGGTAAATGGCCCGCCTGGCATTATGCCCAGTACATGACCTTACGGGACTTTCCTACTTG
GCAGTACATCTACGTATTAGTCATCGCTATTACCATGGTGATGCGGTTTTGGCAGTACAC
CAATGGGCGTGGATAGCGGTTTGACTCACGGGGATTTCCAAGTCTCCACCCCATTGACGT
CAATGGGAGTTTGTTTTGGCACCAAAATCAACGGGACTTTCCAAAATGTCGTAATAACCC
CGCCCCGTTGACGCAAATGGGCGGTAGGCGTGTACGGTGGGAGGTCTATATAAGCAGAGC
TGGTTTAGTGAACCGTCAGATCACTAGAAGCTTTATTGCGGTAGTTTATCACAGTTAAAT
TGCTAACGCAGTCAGTGCTTCTGACACAACAGTCTCGAACTTAAGCTGCAGAAGTTGGTC
GTGAGGCACTGGGCAGGTAAGTATCAAGGTTACAAGACAGGTTTAAGGAGACCAATAGAA
ACTGGGCTTGTCGAGACAGAGAAGACTCTTGCGTTTCTGATAGGCACCTATTGGTCTTAC
TGACATCCACTTTGCCTTTCTCTCCACAGGTGTCCACTCCCAGTTCAATTACAGCTCTTA
AGGCTAGAGTATTAATACGACTCACTATAGGGCTAGCAAAGCCACCATGGCAGAAATCGG
TACTGGCTTTCCATTCGACCCCCATTATGTGGAAGTCCTGGGCGAGCGCATGCACTACGT
CGATGTTGGTCCGCGCGATGGCACCCCTGTGCTGTTCCTGCACGGTAACCCGACCTCCTC
CTACGTGTGGCGCAACATCATCCCGCATGTTGCACCGACCCATCGCTGCATTGCTCCAGA
CCTGATCGGTATGGGCAAATCCGACAAACCAGACCTGGGTTATTTCTTCGACGACCACGT
CCGCTTCATGGATGCCTTCATCGAAGCCCTGGGTCTGGAAGAGGTCGTCCTGGTCATTCA
CGACTGGGGCTCCGCTCTGGGTTTCCACTGGGCCAAGCGCAATCCAGAGCGCGTCAAAGG
TATTGCATTTATGGAGTTCATCCGCCCTATCCCGACCTGGGACGAATGGCCAGAATTTGC
CCGCGAGACCTTCCAGGCCTTCCGCACCACCGACGTCGGCCGCAAGCTGATCATCGATCA
GAACGTTTTTATCGAGGGTACGCTGCCGATGGGTGTCGTCCGCCCGCTGACTGAAGTCGA
GATGGACCATTACCGCGAGCCGTTCCTGAATCCTGTTGACCGCGAGCCACTGTGGCGCTT
CCCAAACGAGCTGCCAATCGCCGGTGAGCCAGCGAACATCGTCGCGCTGGTCGAAGAATA
CATGGACTGGCTGCACCAGTCCCCTGTCCCGAAGCTGCTGTTCTGGGGCACCCCAGGCGT
TCTGATCCCACCGGCCGAAGCCGCTCGCCTGGCCAAAAGCCTGCCTAACTGCAAGGCTGT
GGACATCGGCCCGGGTCTGAATCTGCTGCAAGAAGACAACCCGGACCTGATCGGCAGCGA
GATCGCGCGCTGGCTGTCGACGCTCGAGATTTCCGGCGAGCCAACCACTGAGGATCTGTA
CTTTCAGAGCGATAACGCGATCGCCATGGATTTCATCTTTCATGAGAAACAGGAAGGTTT
CCTGTGTGCTCAGCACTGTCTGAACAATCTATTGCAAGGAGAATATTTTAGCCCTGTGGA
ATTAGCCTCAATTGCACATCAGCTAGATGAAGAAGAGAGGATGAGAATGGCAGAAGGAGG
AGTCACCAGTGAAGAGTATCTTGCATTTTTACAGCAGCCTTCAGAAAACATGGATGATAC
CGGTTTCTTCTCCATTCAGGTAATAAGCAATGCCTTGAAGTTCTGGGGTTTAGAGATCAT
CCATTTCAATAATCCTGAATATCAGAAGCTCGGCATTGATCCTATAAATGAAAGATCTTT
TATATGTAATTATAAACAACACTGGTTTACTATTAGAAAATTTGGAAAACACTGGTTTAA
CTTGAATTCTCTCTTGGCGGGTCCAGAATTAATATCAGATACATGCCTTGCAAATTTCTT
GGCTCGATTACAACAACAAGCATATTCTGTATTTGTTGTCAAGGGTGATCTGCCAGACTG
TGAAGCTGACCAACTCCTGCAGATCATCAGTGTCGAAGAGATGGATACACCAAAACTTAA
TGGAAAAAAATTAGTAAAACAAAAAGAGCATAGAGTCTATAAAACAGTCCTTGAAAAAGT
ATCAGAAGAAAGTGATGAGTCTGGAACATCAGACCAAGATGAGGAGGATTTTCAGAGGGC
CCTTGAACTAAGCCGCCAAGAAACCAATAGAGAAGATGAACATCTCCGCAGTACTATTGA
GTTAAGCATGCAAGGTAGTTCCGGAAACACATCGCAAGATCTTCCAAAGACATCATGTGT
AACTCCTGCTTCAGAACAGCCGAAGAAAATAAAAGAAGACTATTTTGAAAAGCATCAGCA
GGAACAGAAGCAGCAGCAACAACAGTCAGATCTGCCGGGCCACAGTTCATACCTACACGA
AAGGCCAACAACAAGTTCGAGAGCAATTGAGAGTGATCTCAGTGATGACATCAGTGAAGG
CACAGTACAGGCCGCTGTCGACACCATTTTAGAAATTATGAGAAAGAATTTGAAAATCAA
AGGGGAAAAAGTTTAAACGAATTCGGGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTG
CAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTG
CCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGCGGCCGCTTCGAGCAGACATGATA
AGATACATTGATGAGTTTGGACAAACCACAACTAGAATGCAGTGAAAAAAATGCTTTATT
TGTGAAATTTGTGATGCTATTGCTTTATTTGTAACCATTATAAGCTGCAATAAACAAGTT
AACAACAACAATTGCATTCATTTTATGTTTCAGGTTCAGGGGGAGATGTGGGAGGTTTTT
TTAAGCAAGTAAAACCTCTACAAATGTGGTAAAATCGAATTCTAATGGATCCTCTTTGCG
CTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGT
TTCTGCGGACTGGCTTTCTACGTAATGGTTTCTTAGACGTCAGGTGGCACTTTTCGGGGA
AATGTGCGCGGAACCCCTATTTGTTTATTTTTCTAAATACATTCAAATATGTATCCGCTC
ATGAGACAATAACCCTGATAAATGCTTCAATAATATTGAAAAAGGAAGAGTATGAGTATT
CAACATTTCCGTGTCGCCCTTATTCCCTTTTTTGCGGCATTTTGCCTTCCTGTTTTTGCT
CACCCAGAAACGCTGGTGAAAGTAAAAGATGCTGAAGATCAGTTGGGTGCACGAGTGGGT
TACATCGAACTGGATCTCAACAGCGGTAAGATCCTTGAGAGTTTTCGCCCCGAAGAACGT
TTTCCAATGATGAGCACTTTCAAAGTTCTGCTATGTGGCGCGGTATTATCCCGTATTGAC
GCCGGGCAAGAGCAACTCGGTCGCCGCATACACTATTCTCAGAATGACTTGGTTGAGTAC
TCACCAGTCACAGAAAAGCATCTTACGGATGGCATGACAGTAAGAGAATTATGCAGTGCT
GCCATAACCATGAGTGATAACACTGCGGCCAACTTACTTCTGACAACTATCGGAGGACCG
AAGGAGCTAACCGCTTTTTTGCACAACATGGGGGATCATGTAACTCGCCTTGATCGTTGG
GAACCGGAGCTGAATGAAGCCATACCAAACGACGAGCGTGACACCACGATGCCTGTAGCA
ATGGCAACAACGTTGCGCAAACTATTAACTGGCGAACTACTTACTCTAGCTTCCCGGCAA
CAATTAATAGACTGGATGGAGGCGGATAAAGTTGCAGGACCACTTCTGCGCTCGGCCCTT
CCGGCTGGCTGGTTTATTGCTGATAAATCTGGAGCCGGTGAGCGTGGGTCTCGCGGTATC
ATTGCAGCACTGGGGCCAGATGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGG
AGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATT
AAGCATTGGTAATTCGAAATGACCGACCAAGCGACGCCCAACCGGTATCAGCTCACTCAA
AGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAA
AAGGCCAGCAAAAGGCCAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGC
TCCGCCCCCCTGACGAGCATCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGA
CAGGACTATAAAGATACCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTC
CGACCCTGCCGCTTACCGGATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTT
CTCATAGCTCACGCTGTAGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCT
GTGTGCACGAACCCCCCGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCTTG
AGTCCAACCCGGTAAGACACGACTTATCGCCACTGGCAGCAGCCACTGGTAACAGGATTA
GCAGAGCGAGGTATGTAGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCT
ACACTAGAAGGACAGTATTTGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAA
GAGTTGGTAGCTCTTGATCCGGCAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTT
GCAAGCAGCAGATTACGCGCAGAAAAAAAGGATTTCAAGAAGATCCTTTGATCTTTTCTA
CGGGGTCTGACGCTCAGTGGAACGAAAACTCACGTTAAGGGATTTTGGTCATGAGATTAT
CAAAAAGGATCTTCACCTAGATCCTTTTATAGTCCGGAAATACAGGAACGCACGCTGGAT
GGCCCTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGG
TAATGTGGCCTGTACCCTCTGGTTGCATAGGTATTCATACGGTTAAAATTTATCAGGCGC
GATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGC
GCTGAACGCGTTTTAGCGGTGCGTACAATTAAGGGATTATGGTAAATCCACTTACTGTCT
GCCCTCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGG
ATCGAGATCT