Result of FASTA (omim) for pFN21AE5579
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5579, 355 aa
  1>>>pF1KE5579 355 - 355 aa - 355 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.2141+/-0.000389; mu= 2.9222+/- 0.024
 mean_var=141.5431+/-27.727, 0's: 0 Z-trim(116.7): 30  B-trim: 0 in 0/55
 Lambda= 0.107803
 statistics sampled from 28028 (28051) to 28028 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.693), E-opt: 0.2 (0.329), width:  16
 Scan time:  5.700

The best scores are:                                      opt bits E(85289)
NP_001129467 (OMIM: 300920) ataxin-3-like protein  ( 355) 2353 377.4 2.7e-104
NP_004984 (OMIM: 109150,607047) ataxin-3 reference ( 361) 1612 262.1 1.3e-69
NP_109376 (OMIM: 109150,607047) ataxin-3 isoform h ( 306) 1238 203.9 3.8e-52
NP_001121168 (OMIM: 109150,607047) ataxin-3 isofor ( 346) 1153 190.7   4e-48
NP_001158253 (OMIM: 109150,607047) ataxin-3 isofor ( 291) 1149 190.1 5.3e-48
NP_001158251 (OMIM: 109150,607047) ataxin-3 isofor ( 240)  851 143.7   4e-34
NP_001121169 (OMIM: 109150,607047) ataxin-3 isofor ( 310)  851 143.8   5e-34
NP_001158250 (OMIM: 109150,607047) ataxin-3 isofor ( 154)  768 130.7 2.1e-30
NP_001158252 (OMIM: 109150,607047) ataxin-3 isofor ( 182)  556 97.8   2e-20
NP_001158248 (OMIM: 109150,607047) ataxin-3 isofor ( 103)  473 84.8 9.4e-17
NP_001158246 (OMIM: 109150,607047) ataxin-3 isofor (  88)  376 69.7 2.8e-12


>>NP_001129467 (OMIM: 300920) ataxin-3-like protein [Hom  (355 aa)
 initn: 2353 init1: 2353 opt: 2353  Z-score: 1993.5  bits: 377.4 E(85289): 2.7e-104
Smith-Waterman score: 2353; 100.0% identity (100.0% similar) in 355 aa overlap (1-355:1-355)

               10        20        30        40        50        60
pF1KE5 MDFIFHEKQEGFLCAQHCLNNLLQGEYFSPVELASIAHQLDEEERMRMAEGGVTSEEYLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDFIFHEKQEGFLCAQHCLNNLLQGEYFSPVELASIAHQLDEEERMRMAEGGVTSEEYLA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 FLQQPSENMDDTGFFSIQVISNALKFWGLEIIHFNNPEYQKLGIDPINERSFICNYKQHW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FLQQPSENMDDTGFFSIQVISNALKFWGLEIIHFNNPEYQKLGIDPINERSFICNYKQHW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 FTIRKFGKHWFNLNSLLAGPELISDTCLANFLARLQQQAYSVFVVKGDLPDCEADQLLQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FTIRKFGKHWFNLNSLLAGPELISDTCLANFLARLQQQAYSVFVVKGDLPDCEADQLLQI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 ISVEEMDTPKLNGKKLVKQKEHRVYKTVLEKVSEESDESGTSDQDEEDFQRALELSRQET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ISVEEMDTPKLNGKKLVKQKEHRVYKTVLEKVSEESDESGTSDQDEEDFQRALELSRQET
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 NREDEHLRSTIELSMQGSSGNTSQDLPKTSCVTPASEQPKKIKEDYFEKHQQEQKQQQQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NREDEHLRSTIELSMQGSSGNTSQDLPKTSCVTPASEQPKKIKEDYFEKHQQEQKQQQQQ
              250       260       270       280       290       300

              310       320       330       340       350     
pF1KE5 SDLPGHSSYLHERPTTSSRAIESDLSDDISEGTVQAAVDTILEIMRKNLKIKGEK
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SDLPGHSSYLHERPTTSSRAIESDLSDDISEGTVQAAVDTILEIMRKNLKIKGEK
              310       320       330       340       350     

>>NP_004984 (OMIM: 109150,607047) ataxin-3 reference iso  (361 aa)
 initn: 1431 init1: 1311 opt: 1612  Z-score: 1370.5  bits: 262.1 E(85289): 1.3e-69
Smith-Waterman score: 1612; 69.8% identity (85.9% similar) in 361 aa overlap (1-355:1-361)

               10        20        30        40        50        60
pF1KE5 MDFIFHEKQEGFLCAQHCLNNLLQGEYFSPVELASIAHQLDEEERMRMAEGGVTSEEYLA
       :. :::::::: :::::::::::::::::::::.::::::::::::::::::::::.: .
NP_004 MESIFHEKQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERMRMAEGGVTSEDYRT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 FLQQPSENMDDTGFFSIQVISNALKFWGLEIIHFNNPEYQKLGIDPINERSFICNYKQHW
       :::::: ::::.::::::::::::: ::::.: ::.::::.: ::::::::::::::.::
NP_004 FLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEHW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 FTIRKFGKHWFNLNSLLAGPELISDTCLANFLARLQQQAYSVFVVKGDLPDCEADQLLQI
       ::.::.::.::::::::.:::::::: :: :::.:::..::.:::::::::::::::::.
NP_004 FTVRKLGKQWFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFVVKGDLPDCEADQLLQM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 ISVEEMDTPKLNGKKLVKQKEHRVYKTVLEKVSEESDESGTSDQDEEDFQRALELSRQET
       : :..:  ::: :..:.. ::.::.:: ::.: : .: ::  :.::::.:::: ::::: 
NP_004 IRVQQMHRPKLIGEELAQLKEQRVHKTDLERVLEANDGSGMLDEDEEDLQRALALSRQEI
              190       200       210       220       230       240

                250       260       270       280       290        
pF1KE5 NREDEH--LRSTIELSMQGSSGNTSQDLPKTSCVTPASEQPKKIKEDYFEKHQQ---EQK
       . :::.  :: .:.::::::: : :::. .:: .. .::. .: .: ::::.::   .:.
NP_004 DMEDEEADLRRAIQLSMQGSSRNISQDMTQTSGTNLTSEELRKRREAYFEKQQQKQQQQQ
              250       260       270       280       290       300

         300       310       320       330        340       350    
pF1KE5 QQQQQSDLPGHSSYLHERPTTSSRAIESDLSDDISE-GTVQAAVDTILEIMRKNLKIKGE
       :::::.:: :.::.  :::.::: :. :::.: .::   .::::   :: .:..:: .:.
NP_004 QQQQQGDLSGQSSHPCERPATSSGALGSDLGDAMSEEDMLQAAVTMSLETVRNDLKTEGK
              310       320       330       340       350       360

        
pF1KE5 K
       :
NP_004 K
        

>>NP_109376 (OMIM: 109150,607047) ataxin-3 isoform h [Ho  (306 aa)
 initn: 1057 init1: 937 opt: 1238  Z-score: 1057.3  bits: 203.9 E(85289): 3.8e-52
Smith-Waterman score: 1238; 65.6% identity (83.9% similar) in 299 aa overlap (63-355:8-306)

             40        50        60        70        80        90  
pF1KE5 LASIAHQLDEEERMRMAEGGVTSEEYLAFLQQPSENMDDTGFFSIQVISNALKFWGLEII
                                     .::: ::::.::::::::::::: ::::.:
NP_109                        MESIFHEKQPSGNMDDSGFFSIQVISNALKVWGLELI
                                      10        20        30       

            100       110       120       130       140       150  
pF1KE5 HFNNPEYQKLGIDPINERSFICNYKQHWFTIRKFGKHWFNLNSLLAGPELISDTCLANFL
        ::.::::.: ::::::::::::::.::::.::.::.::::::::.:::::::: :: ::
NP_109 LFNSPEYQRLRIDPINERSFICNYKEHWFTVRKLGKQWFNLNSLLTGPELISDTYLALFL
        40        50        60        70        80        90       

            160       170       180       190       200       210  
pF1KE5 ARLQQQAYSVFVVKGDLPDCEADQLLQIISVEEMDTPKLNGKKLVKQKEHRVYKTVLEKV
       :.:::..::.:::::::::::::::::.: :..:  ::: :..:.. ::.::.:: ::.:
NP_109 AQLQQEGYSIFVVKGDLPDCEADQLLQMIRVQQMHRPKLIGEELAQLKEQRVHKTDLERV
       100       110       120       130       140       150       

            220       230       240         250       260       270
pF1KE5 SEESDESGTSDQDEEDFQRALELSRQETNREDEH--LRSTIELSMQGSSGNTSQDLPKTS
        : .: ::  :.::::.:::: ::::: . :::.  :: .:.::::::: : :::. .::
NP_109 LEANDGSGMLDEDEEDLQRALALSRQEIDMEDEEADLRRAIQLSMQGSSRNISQDMTQTS
       160       170       180       190       200       210       

              280       290          300       310       320       
pF1KE5 CVTPASEQPKKIKEDYFEKHQQ---EQKQQQQQSDLPGHSSYLHERPTTSSRAIESDLSD
        .. .::. .: .: ::::.::   .:.:::::.:: :.::.  :::.::: :. :::.:
NP_109 GTNLTSEELRKRREAYFEKQQQKQQQQQQQQQQGDLSGQSSHPCERPATSSGALGSDLGD
       220       230       240       250       260       270       

       330        340       350     
pF1KE5 DISE-GTVQAAVDTILEIMRKNLKIKGEK
        .::   .::::   :: .:..:: .:.:
NP_109 AMSEEDMLQAAVTMSLETVRNDLKTEGKK
       280       290       300      

>>NP_001121168 (OMIM: 109150,607047) ataxin-3 isoform ad  (346 aa)
 initn: 972 init1: 852 opt: 1153  Z-score: 985.0  bits: 190.7 E(85289): 4e-48
Smith-Waterman score: 1480; 66.2% identity (82.0% similar) in 361 aa overlap (1-355:1-346)

               10        20        30        40        50        60
pF1KE5 MDFIFHEKQEGFLCAQHCLNNLLQGEYFSPVELASIAHQLDEEERMRMAEGGVTSEEYLA
       :. :::::::: :::::::::::::::::::::.::::::::::::::::::::::.: .
NP_001 MESIFHEKQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERMRMAEGGVTSEDYRT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 FLQQPSENMDDTGFFSIQVISNALKFWGLEIIHFNNPEYQKLGIDPINERSFICNYKQHW
       :::               ::::::: ::::.: ::.::::.: ::::::::::::::.::
NP_001 FLQ---------------VISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEHW
                              70        80        90       100     

              130       140       150       160       170       180
pF1KE5 FTIRKFGKHWFNLNSLLAGPELISDTCLANFLARLQQQAYSVFVVKGDLPDCEADQLLQI
       ::.::.::.::::::::.:::::::: :: :::.:::..::.:::::::::::::::::.
NP_001 FTVRKLGKQWFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFVVKGDLPDCEADQLLQM
         110       120       130       140       150       160     

              190       200       210       220       230       240
pF1KE5 ISVEEMDTPKLNGKKLVKQKEHRVYKTVLEKVSEESDESGTSDQDEEDFQRALELSRQET
       : :..:  ::: :..:.. ::.::.:: ::.: : .: ::  :.::::.:::: ::::: 
NP_001 IRVQQMHRPKLIGEELAQLKEQRVHKTDLERVLEANDGSGMLDEDEEDLQRALALSRQEI
         170       180       190       200       210       220     

                250       260       270       280       290        
pF1KE5 NREDEH--LRSTIELSMQGSSGNTSQDLPKTSCVTPASEQPKKIKEDYFEKHQQ---EQK
       . :::.  :: .:.::::::: : :::. .:: .. .::. .: .: ::::.::   .:.
NP_001 DMEDEEADLRRAIQLSMQGSSRNISQDMTQTSGTNLTSEELRKRREAYFEKQQQKQQQQQ
         230       240       250       260       270       280     

         300       310       320       330        340       350    
pF1KE5 QQQQQSDLPGHSSYLHERPTTSSRAIESDLSDDISE-GTVQAAVDTILEIMRKNLKIKGE
       :::::.:: :.::.  :::.::: :. :::.: .::   .::::   :: .:..:: .:.
NP_001 QQQQQGDLSGQSSHPCERPATSSGALGSDLGDAMSEEDMLQAAVTMSLETVRNDLKTEGK
         290       300       310       320       330       340     

        
pF1KE5 K
       :
NP_001 K
        

>>NP_001158253 (OMIM: 109150,607047) ataxin-3 isoform y   (291 aa)
 initn: 965 init1: 845 opt: 1149  Z-score: 982.8  bits: 190.1 E(85289): 5.3e-48
Smith-Waterman score: 1149; 64.1% identity (82.9% similar) in 287 aa overlap (75-355:5-291)

           50        60        70        80        90       100    
pF1KE5 RMRMAEGGVTSEEYLAFLQQPSENMDDTGFFSIQVISNALKFWGLEIIHFNNPEYQKLGI
                                     :  .::::::: ::::.: ::.::::.: :
NP_001                           MESIFHEKVISNALKVWGLELILFNSPEYQRLRI
                                         10        20        30    

          110       120       130       140       150       160    
pF1KE5 DPINERSFICNYKQHWFTIRKFGKHWFNLNSLLAGPELISDTCLANFLARLQQQAYSVFV
       :::::::::::::.::::.::.::.::::::::.:::::::: :: :::.:::..::.::
NP_001 DPINERSFICNYKEHWFTVRKLGKQWFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFV
           40        50        60        70        80        90    

          170       180       190       200       210       220    
pF1KE5 VKGDLPDCEADQLLQIISVEEMDTPKLNGKKLVKQKEHRVYKTVLEKVSEESDESGTSDQ
       :::::::::::::::.: :..:  ::: :..:.. ::.::.:: ::.: : .: ::  :.
NP_001 VKGDLPDCEADQLLQMIRVQQMHRPKLIGEELAQLKEQRVHKTDLERVLEANDGSGMLDE
          100       110       120       130       140       150    

          230       240         250       260       270       280  
pF1KE5 DEEDFQRALELSRQETNREDEH--LRSTIELSMQGSSGNTSQDLPKTSCVTPASEQPKKI
       ::::.:::: ::::: . :::.  :: .:.::::::: : :::. .:: .. .::. .: 
NP_001 DEEDLQRALALSRQEIDMEDEEADLRRAIQLSMQGSSRNISQDMTQTSGTNLTSEELRKR
          160       170       180       190       200       210    

            290          300       310       320       330         
pF1KE5 KEDYFEKHQQ---EQKQQQQQSDLPGHSSYLHERPTTSSRAIESDLSDDISE-GTVQAAV
       .: ::::.::   .:.:::::.:: :.::.  :::.::: :. :::.: .::   .::::
NP_001 REAYFEKQQQKQQQQQQQQQQGDLSGQSSHPCERPATSSGALGSDLGDAMSEEDMLQAAV
          220       230       240       250       260       270    

      340       350     
pF1KE5 DTILEIMRKNLKIKGEK
          :: .:..:: .:.:
NP_001 TMSLETVRNDLKTEGKK
          280       290 

>>NP_001158251 (OMIM: 109150,607047) ataxin-3 isoform r   (240 aa)
 initn: 670 init1: 550 opt: 851  Z-score: 733.7  bits: 143.7 E(85289): 4e-34
Smith-Waterman score: 851; 60.6% identity (80.9% similar) in 236 aa overlap (126-355:5-240)

         100       110       120       130       140       150     
pF1KE5 NPEYQKLGIDPINERSFICNYKQHWFTIRKFGKHWFNLNSLLAGPELISDTCLANFLARL
                                     : ..::::::::.:::::::: :: :::.:
NP_001                           MESIFHEKWFNLNSLLTGPELISDTYLALFLAQL
                                         10        20        30    

         160       170       180       190       200       210     
pF1KE5 QQQAYSVFVVKGDLPDCEADQLLQIISVEEMDTPKLNGKKLVKQKEHRVYKTVLEKVSEE
       ::..::.:::::::::::::::::.: :..:  ::: :..:.. ::.::.:: ::.: : 
NP_001 QQEGYSIFVVKGDLPDCEADQLLQMIRVQQMHRPKLIGEELAQLKEQRVHKTDLERVLEA
           40        50        60        70        80        90    

         220       230       240         250       260       270   
pF1KE5 SDESGTSDQDEEDFQRALELSRQETNREDEH--LRSTIELSMQGSSGNTSQDLPKTSCVT
       .: ::  :.::::.:::: ::::: . :::.  :: .:.::::::: : :::. .:: ..
NP_001 NDGSGMLDEDEEDLQRALALSRQEIDMEDEEADLRRAIQLSMQGSSRNISQDMTQTSGTN
          100       110       120       130       140       150    

           280       290          300       310       320       330
pF1KE5 PASEQPKKIKEDYFEKHQQ---EQKQQQQQSDLPGHSSYLHERPTTSSRAIESDLSDDIS
        .::. .: .: ::::.::   .:.:::::.:: :.::.  :::.::: :. :::.: .:
NP_001 LTSEELRKRREAYFEKQQQKQQQQQQQQQQGDLSGQSSHPCERPATSSGALGSDLGDAMS
          160       170       180       190       200       210    

               340       350     
pF1KE5 E-GTVQAAVDTILEIMRKNLKIKGEK
       :   .::::   :: .:..:: .:.:
NP_001 EEDMLQAAVTMSLETVRNDLKTEGKK
          220       230       240

>>NP_001121169 (OMIM: 109150,607047) ataxin-3 isoform e   (310 aa)
 initn: 783 init1: 549 opt: 851  Z-score: 731.9  bits: 143.8 E(85289): 5e-34
Smith-Waterman score: 1200; 58.4% identity (72.6% similar) in 361 aa overlap (1-355:1-310)

               10        20        30        40        50        60
pF1KE5 MDFIFHEKQEGFLCAQHCLNNLLQGEYFSPVELASIAHQLDEEERMRMAEGGVTSEEYLA
       :. :::::::: :::::::::::::::::::::.::::::::::::::::::::::.: .
NP_001 MESIFHEKQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERMRMAEGGVTSEDYRT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 FLQQPSENMDDTGFFSIQVISNALKFWGLEIIHFNNPEYQKLGIDPINERSFICNYKQHW
       :::::: ::::.::::::                                          
NP_001 FLQQPSGNMDDSGFFSIQ------------------------------------------
               70                                                  

              130       140       150       160       170       180
pF1KE5 FTIRKFGKHWFNLNSLLAGPELISDTCLANFLARLQQQAYSVFVVKGDLPDCEADQLLQI
                ::::::::.:::::::: :: :::.:::..::.:::::::::::::::::.
NP_001 ---------WFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFVVKGDLPDCEADQLLQM
                80        90       100       110       120         

              190       200       210       220       230       240
pF1KE5 ISVEEMDTPKLNGKKLVKQKEHRVYKTVLEKVSEESDESGTSDQDEEDFQRALELSRQET
       : :..:  ::: :..:.. ::.::.:: ::.: : .: ::  :.::::.:::: ::::: 
NP_001 IRVQQMHRPKLIGEELAQLKEQRVHKTDLERVLEANDGSGMLDEDEEDLQRALALSRQEI
     130       140       150       160       170       180         

                250       260       270       280       290        
pF1KE5 NREDEH--LRSTIELSMQGSSGNTSQDLPKTSCVTPASEQPKKIKEDYFEKHQQ---EQK
       . :::.  :: .:.::::::: : :::. .:: .. .::. .: .: ::::.::   .:.
NP_001 DMEDEEADLRRAIQLSMQGSSRNISQDMTQTSGTNLTSEELRKRREAYFEKQQQKQQQQQ
     190       200       210       220       230       240         

         300       310       320       330        340       350    
pF1KE5 QQQQQSDLPGHSSYLHERPTTSSRAIESDLSDDISE-GTVQAAVDTILEIMRKNLKIKGE
       :::::.:: :.::.  :::.::: :. :::.: .::   .::::   :: .:..:: .:.
NP_001 QQQQQGDLSGQSSHPCERPATSSGALGSDLGDAMSEEDMLQAAVTMSLETVRNDLKTEGK
     250       260       270       280       290       300         

        
pF1KE5 K
       :
NP_001 K
     310

>>NP_001158250 (OMIM: 109150,607047) ataxin-3 isoform o   (154 aa)
 initn: 762 init1: 762 opt: 768  Z-score: 667.0  bits: 130.7 E(85289): 2.1e-30
Smith-Waterman score: 768; 85.3% identity (94.6% similar) in 129 aa overlap (1-129:1-129)

               10        20        30        40        50        60
pF1KE5 MDFIFHEKQEGFLCAQHCLNNLLQGEYFSPVELASIAHQLDEEERMRMAEGGVTSEEYLA
       :. :::::::: :::::::::::::::::::::.::::::::::::::::::::::.: .
NP_001 MESIFHEKQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERMRMAEGGVTSEDYRT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 FLQQPSENMDDTGFFSIQVISNALKFWGLEIIHFNNPEYQKLGIDPINERSFICNYKQHW
       :::::: ::::.::::::::::::: ::::.: ::.::::.: ::::::::::::::.::
NP_001 FLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEHW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 FTIRKFGKHWFNLNSLLAGPELISDTCLANFLARLQQQAYSVFVVKGDLPDCEADQLLQI
       ::.::.::.                                                   
NP_001 FTVRKLGKQTAAKAATAAAAAAAGGPIRTEFTSM                          
              130       140       150                              

>>NP_001158252 (OMIM: 109150,607047) ataxin-3 isoform u   (182 aa)
 initn: 375 init1: 255 opt: 556  Z-score: 487.6  bits: 97.8 E(85289): 2e-20
Smith-Waterman score: 556; 54.4% identity (76.9% similar) in 182 aa overlap (180-355:1-182)

     150       160       170       180       190       200         
pF1KE5 NFLARLQQQAYSVFVVKGDLPDCEADQLLQIISVEEMDTPKLNGKKLVKQKEHRVYKTVL
                                     .: :..:  ::: :..:.. ::.::.:: :
NP_001                               MIRVQQMHRPKLIGEELAQLKEQRVHKTDL
                                             10        20        30

     210       220       230       240         250       260       
pF1KE5 EKVSEESDESGTSDQDEEDFQRALELSRQETNREDEH--LRSTIELSMQGSSGNTSQDLP
       :.: : .: ::  :.::::.:::: ::::: . :::.  :: .:.::::::: : :::. 
NP_001 ERVLEANDGSGMLDEDEEDLQRALALSRQEIDMEDEEADLRRAIQLSMQGSSRNISQDMT
               40        50        60        70        80        90

       270       280       290          300       310       320    
pF1KE5 KTSCVTPASEQPKKIKEDYFEKHQQ---EQKQQQQQSDLPGHSSYLHERPTTSSRAIESD
       .:: .. .::. .: .: ::::.::   .:.:::::.:: :.::.  :::.::: :. ::
NP_001 QTSGTNLTSEELRKRREAYFEKQQQKQQQQQQQQQQGDLSGQSSHPCERPATSSGALGSD
              100       110       120       130       140       150

          330        340       350     
pF1KE5 LSDDISE-GTVQAAVDTILEIMRKNLKIKGEK
       :.: .::   .::::   :: .:..:: .:.:
NP_001 LGDAMSEEDMLQAAVTMSLETVRNDLKTEGKK
              160       170       180  

>>NP_001158248 (OMIM: 109150,607047) ataxin-3 isoform g   (103 aa)
 initn: 467 init1: 467 opt: 473  Z-score: 421.8  bits: 84.8 E(85289): 9.4e-17
Smith-Waterman score: 473; 84.3% identity (94.0% similar) in 83 aa overlap (1-83:1-83)

               10        20        30        40        50        60
pF1KE5 MDFIFHEKQEGFLCAQHCLNNLLQGEYFSPVELASIAHQLDEEERMRMAEGGVTSEEYLA
       :. :::::::: :::::::::::::::::::::.::::::::::::::::::::::.: .
NP_001 MESIFHEKQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERMRMAEGGVTSEDYRT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 FLQQPSENMDDTGFFSIQVISNALKFWGLEIIHFNNPEYQKLGIDPINERSFICNYKQHW
       :::::: ::::.::::::. ..:                                     
NP_001 FLQQPSGNMDDSGFFSIQTAAKAATAAAAAAAGGPIRTEFTSM                 
               70        80        90       100                    




355 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 02:02:05 2016 done: Tue Nov  8 02:02:06 2016
 Total Scan time:  5.700 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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