TMC6 ORF clone pF1KSDF0136

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Flexi ORF Clone pF1KSDF0136

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Clone info.

Species

human

Clone Name

pF1KSDF0136 Sequence (with vector) Restriction Map

Product ID

FXC01035

HaloTag Clone PID

FHC01035

ORF Sequence

DNA sequence (2415 bp)
Protein sequence (805 aa)

Linker Type

Flexi_RBS type

more Linker info

Vector Type

pF1KM Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB384417]

Gene

FLJ00136

Symbol

TMC6

Alias : EV1, EVER1, EVIN1, LAK-4P, TNRC6C-AS1, lnc

Description

transmembrane channel-like 6, transcript variant 2

Original Clone ID

sh02543

Features of the cloned ORF sequence

Description

Length: 2415 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 805 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS32748.1 0 100.0 TMC6 CCDS10577.1 1.8e-64 35.9 TMC5 CCDS45431.1 2.2e-64 33.5 TMC5 CCDS76837.1 3e-50 32.6 TMC5 CCDS42126.1 1e-47 31.1 TMC5 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition HMMPfam IPR012496 540 646 PF07810 TMC
Prediction of transmembrane (TM) segments Method No. N terminal transmembrane region C terminal type length SOSUI2 1 209 CVLALHSLGLALLSALQALMPWR 231 PRIMARY 23 2 247 SYFLFLKTLLAFNALLLLLLVAF 269 PRIMARY 23 3 342 AYLSTVGVSFFITCITLVYSMAH 364 PRIMARY 23 4 436 LVWLLCLGTALGCAVAVHVFSEF 458 PRIMARY 23 5 473 LVLPLVVGLLNLGAPYLCRVLAA 495 PRIMARY 23 6 509 AICRNLILKLAILGTLCYHWLG 530 SECONDARY 22 7 552 FLVMDFVLMLLDTLFGELVWRII 574 PRIMARY 23 8 604 WLGVLFSPLLPAVQIIKLLLVFY 626 PRIMARY 23 9 649 STVFLTLLCFPAFLGAAVFLCYA 671 PRIMARY 23 10 719 MENTFFVFLVSALLLAVIYLNIQ 741 PRIMARY 23
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) XP_011522557 805 226400,605828 100.0 100.0 XP_005257052 805 226400,605828 100.0 100.0 NP_009198 805 226400,605828 100.0 100.0 NP_001120670 805 226400,605828 100.0 100.0 NP_001308114 805 226400,605828 100.0 100.0 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pF1KSDF0136 Download

>FLJ00136  2415 bp
ATGGCCCAGCCACTGGCCTTCATCCTCGATGTCCCTGAGACCCCAGGGGACCAGGGCCAG
GGCCCCAGCCCCTATGATGAAAGCGAAGTGCACGACTCCTTCCAGCAGCTCATCCAGGAG
CAGAGCCAGTGCACGGCCCAGGAGGGGCTGGAGCTGCAGCAGAGAGAGCGGGAGGTGACA
GGAAGTAGCCAGCAGACACTCTGGCGGCCCGAGGGCACCCAGAGCACGGCCACACTCCGC
ATCCTGGCCAGCATGCCCAGCCGCACCATTGGCCGCAGCCGAGGTGCCATCATCTCCCAG
TACTACAACCGCACGGTGCAGCTTCGGTGCAGGAGCAGCCGGCCCCTGCTCGGGAACTTT
GTCCGCTCCGCCTGGCCCAGCCTCCGCCTGTACGACCTGGAGCTGGACCCCACGGCCCTG
GAGGAGGAGGAGAAGCAGAGCCTCCTGGTGAAGGAGCTCCAGAGCCTGGCAGTGGCACAG
CGGGACCACATGCTTCGCGGGATGCCCTTAAGCCTGGCTGAGAAACGCAGCCTGCGAGAG
AAGAGCAGGACCCCGAGGGGGAAGTGGAGGGGCCAGCCGGGCAGCGGCGGGGTCTGCTCC
TGCTGTGGCCGGCTCAGATATGCCTGCGTGCTGGCCTTGCACAGCCTGGGCCTGGCGCTG
CTCTCCGCCCTGCAGGCCCTGATGCCGTGGCGCTACGCCCTGAAGCGCATCGGGGGCCAG
TTCGGCTCCAGCGTGCTCTCCTACTTCCTCTTTCTCAAGACCCTGCTGGCTTTCAATGCC
CTCCTGCTGCTGCTGCTGGTGGCCTTCATCATGGGCCCTCAGGTCGCCTTCCCACCCGCC
CTGCCGGGCCCTGCCCCCGTCTGCACAGGCCTGGAGCTCCTCACAGGCGCGGGTTGCTTC
ACCCACACCGTCATGTACTACGGCCACTACAGTAACGCCACGCTGAACCAGCCGTGTGGC
AGCCCCCTGGATGGCAGCCAGTGCACACCCAGGGTGGGTGGCCTGCCCTACAACATGCCC
CTGGCCTACCTCTCCACTGTGGGCGTGAGCTTCTTTATCACCTGCATCACCCTGGTGTAC
AGCATGGCTCACTCTTTCGGGGAGAGCTACCGGGTGGGCAGCACCTCTGGCATCCACGCC
ATCACCGTCTTCTGCTCCTGGGACTACAAGGTGACGCAGAAGCGGGCCTCCCGCCTCCAG
CAGGACAATATTCGCACCCGGCTGAAGGAGCTGCTGGCCGAGTGGCAGCTGCGGCACAGC
CCCAGGAGCGTGTGCGGGAGGCTGCGGCAGGCGGCTGTGCTGGGGCTTGTGTGGCTGCTG
TGTCTGGGGACCGCGCTGGGCTGCGCCGTGGCCGTCCACGTCTTCTCGGAGTTCATGATC
CAGAGTCCAGAGGCTGCTGGCCAGGAGGCTGTGCTGCTGGTCCTGCCCCTGGTGGTTGGC
CTCCTCAACCTGGGGGCCCCCTACCTGTGCCGTGTCCTGGCCGCCCTGGAGCCGCATGAC
TCCCCGGTACTGGAGGTGTACGTGGCCATCTGCAGGAACCTCATCCTCAAGCTGGCCATC
CTGGGGACACTGTGCTACCACTGGCTGGGCCGCAGGGTGGGCGTCCTGCAGGGCCAGTGC
TGGGAGGATTTTGTGGGCCAGGAGCTGTACCGGTTCCTGGTGATGGACTTCGTCCTCATG
TTGCTGGACACGCTTTTTGGGGAACTGGTGTGGAGGATTATCTCCGAGAAGAAGCTGAAG
AGGAGGCGGAAGCCGGAGTTTGACATTGCCCGGAATGTCCTGGAGCTGATTTATGGGCAG
ACTCTGACCTGGCTGGGGGTGCTCTTCTCGCCCCTCCTCCCCGCCGTGCAGATCATCAAG
CTGCTGCTCGTCTTCTATGTCAAGAAGACCAGCCTTCTGGCCAACTGCCAGGCGCCGCGC
CGGCCCTGGCTGGCCTCACACATGAGCACCGTCTTCCTCACGCTGCTCTGCTTCCCCGCC
TTCCTGGGCGCCGCTGTCTTCCTCTGCTACGCCGTCTGGCAGGTGAAGCCCTCGAGCACC
TGCGGCCCCTTCCGGACCCTGGACACCATGTACGAGGCCGGCAGGGTGTGGGTGCGCCAC
CTGGAGGCGGCAGGCCCCAGGGTCTCCTGGCTGCCCTGGGTGCACCGGTACCTGATGGAA
AACACCTTCTTTGTCTTCCTGGTGTCAGCCCTGCTGCTGGCCGTGATCTACCTCAACATC
CAGGTGGTGCGGGGCCAGCGCAAGGTCATCTGCCTGCTCAAGGAGCAGATCAGCAATGAG
GGTGAGGACAAAATCTTCTTAATCAACAAGCTTCACTCCATCTACGAGAGGAAGGAGAGG
GAGGAGAGGAGCAGGGTTGGGACAACCGAGGAGGCTGCGGCACCCCCTGCCCTGCTCACA
GATGAACAGGATGCC

ORF Protein

Cloned ORF protein sequence for pF1KSDF0136 Download

>FLJ00136  805 aa
MAQPLAFILDVPETPGDQGQGPSPYDESEVHDSFQQLIQEQSQCTAQEGLELQQREREVT
GSSQQTLWRPEGTQSTATLRILASMPSRTIGRSRGAIISQYYNRTVQLRCRSSRPLLGNF
VRSAWPSLRLYDLELDPTALEEEEKQSLLVKELQSLAVAQRDHMLRGMPLSLAEKRSLRE
KSRTPRGKWRGQPGSGGVCSCCGRLRYACVLALHSLGLALLSALQALMPWRYALKRIGGQ
FGSSVLSYFLFLKTLLAFNALLLLLLVAFIMGPQVAFPPALPGPAPVCTGLELLTGAGCF
THTVMYYGHYSNATLNQPCGSPLDGSQCTPRVGGLPYNMPLAYLSTVGVSFFITCITLVY
SMAHSFGESYRVGSTSGIHAITVFCSWDYKVTQKRASRLQQDNIRTRLKELLAEWQLRHS
PRSVCGRLRQAAVLGLVWLLCLGTALGCAVAVHVFSEFMIQSPEAAGQEAVLLVLPLVVG
LLNLGAPYLCRVLAALEPHDSPVLEVYVAICRNLILKLAILGTLCYHWLGRRVGVLQGQC
WEDFVGQELYRFLVMDFVLMLLDTLFGELVWRIISEKKLKRRRKPEFDIARNVLELIYGQ
TLTWLGVLFSPLLPAVQIIKLLLVFYVKKTSLLANCQAPRRPWLASHMSTVFLTLLCFPA
FLGAAVFLCYAVWQVKPSSTCGPFRTLDTMYEAGRVWVRHLEAAGPRVSWLPWVHRYLME
NTFFVFLVSALLLAVIYLNIQVVRGQRKVICLLKEQISNEGEDKIFLINKLHSIYERKER
EERSRVGTTEEAAAPPALLTDEQDA

ORF+Vector

Nucleotide Sequence (with vector) for pF1KSDF0136 Download

>pF1KSDF0136  5554 bp
GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA
TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCTTTCGAAGGAGAT
AGAACCATGGCCCAGCCACTGGCCTTCATCCTCGATGTCCCTGAGACCCCAGGGGACCAG
GGCCAGGGCCCCAGCCCCTATGATGAAAGCGAAGTGCACGACTCCTTCCAGCAGCTCATC
CAGGAGCAGAGCCAGTGCACGGCCCAGGAGGGGCTGGAGCTGCAGCAGAGAGAGCGGGAG
GTGACAGGAAGTAGCCAGCAGACACTCTGGCGGCCCGAGGGCACCCAGAGCACGGCCACA
CTCCGCATCCTGGCCAGCATGCCCAGCCGCACCATTGGCCGCAGCCGAGGTGCCATCATC
TCCCAGTACTACAACCGCACGGTGCAGCTTCGGTGCAGGAGCAGCCGGCCCCTGCTCGGG
AACTTTGTCCGCTCCGCCTGGCCCAGCCTCCGCCTGTACGACCTGGAGCTGGACCCCACG
GCCCTGGAGGAGGAGGAGAAGCAGAGCCTCCTGGTGAAGGAGCTCCAGAGCCTGGCAGTG
GCACAGCGGGACCACATGCTTCGCGGGATGCCCTTAAGCCTGGCTGAGAAACGCAGCCTG
CGAGAGAAGAGCAGGACCCCGAGGGGGAAGTGGAGGGGCCAGCCGGGCAGCGGCGGGGTC
TGCTCCTGCTGTGGCCGGCTCAGATATGCCTGCGTGCTGGCCTTGCACAGCCTGGGCCTG
GCGCTGCTCTCCGCCCTGCAGGCCCTGATGCCGTGGCGCTACGCCCTGAAGCGCATCGGG
GGCCAGTTCGGCTCCAGCGTGCTCTCCTACTTCCTCTTTCTCAAGACCCTGCTGGCTTTC
AATGCCCTCCTGCTGCTGCTGCTGGTGGCCTTCATCATGGGCCCTCAGGTCGCCTTCCCA
CCCGCCCTGCCGGGCCCTGCCCCCGTCTGCACAGGCCTGGAGCTCCTCACAGGCGCGGGT
TGCTTCACCCACACCGTCATGTACTACGGCCACTACAGTAACGCCACGCTGAACCAGCCG
TGTGGCAGCCCCCTGGATGGCAGCCAGTGCACACCCAGGGTGGGTGGCCTGCCCTACAAC
ATGCCCCTGGCCTACCTCTCCACTGTGGGCGTGAGCTTCTTTATCACCTGCATCACCCTG
GTGTACAGCATGGCTCACTCTTTCGGGGAGAGCTACCGGGTGGGCAGCACCTCTGGCATC
CACGCCATCACCGTCTTCTGCTCCTGGGACTACAAGGTGACGCAGAAGCGGGCCTCCCGC
CTCCAGCAGGACAATATTCGCACCCGGCTGAAGGAGCTGCTGGCCGAGTGGCAGCTGCGG
CACAGCCCCAGGAGCGTGTGCGGGAGGCTGCGGCAGGCGGCTGTGCTGGGGCTTGTGTGG
CTGCTGTGTCTGGGGACCGCGCTGGGCTGCGCCGTGGCCGTCCACGTCTTCTCGGAGTTC
ATGATCCAGAGTCCAGAGGCTGCTGGCCAGGAGGCTGTGCTGCTGGTCCTGCCCCTGGTG
GTTGGCCTCCTCAACCTGGGGGCCCCCTACCTGTGCCGTGTCCTGGCCGCCCTGGAGCCG
CATGACTCCCCGGTACTGGAGGTGTACGTGGCCATCTGCAGGAACCTCATCCTCAAGCTG
GCCATCCTGGGGACACTGTGCTACCACTGGCTGGGCCGCAGGGTGGGCGTCCTGCAGGGC
CAGTGCTGGGAGGATTTTGTGGGCCAGGAGCTGTACCGGTTCCTGGTGATGGACTTCGTC
CTCATGTTGCTGGACACGCTTTTTGGGGAACTGGTGTGGAGGATTATCTCCGAGAAGAAG
CTGAAGAGGAGGCGGAAGCCGGAGTTTGACATTGCCCGGAATGTCCTGGAGCTGATTTAT
GGGCAGACTCTGACCTGGCTGGGGGTGCTCTTCTCGCCCCTCCTCCCCGCCGTGCAGATC
ATCAAGCTGCTGCTCGTCTTCTATGTCAAGAAGACCAGCCTTCTGGCCAACTGCCAGGCG
CCGCGCCGGCCCTGGCTGGCCTCACACATGAGCACCGTCTTCCTCACGCTGCTCTGCTTC
CCCGCCTTCCTGGGCGCCGCTGTCTTCCTCTGCTACGCCGTCTGGCAGGTGAAGCCCTCG
AGCACCTGCGGCCCCTTCCGGACCCTGGACACCATGTACGAGGCCGGCAGGGTGTGGGTG
CGCCACCTGGAGGCGGCAGGCCCCAGGGTCTCCTGGCTGCCCTGGGTGCACCGGTACCTG
ATGGAAAACACCTTCTTTGTCTTCCTGGTGTCAGCCCTGCTGCTGGCCGTGATCTACCTC
AACATCCAGGTGGTGCGGGGCCAGCGCAAGGTCATCTGCCTGCTCAAGGAGCAGATCAGC
AATGAGGGTGAGGACAAAATCTTCTTAATCAACAAGCTTCACTCCATCTACGAGAGGAAG
GAGAGGGAGGAGAGGAGCAGGGTTGGGACAACCGAGGAGGCTGCGGCACCCCCTGCCCTG
CTCACAGATGAACAGGATGCCTACGTAGTTTAAACGAATTCGAGCTCGGTACCCGGGGAT
CCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGA
AGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGCCTCTAA
ACGGGTCTTGAGGGGTTTTTTGCTGAAAGGAGGAACTATATCCGGTTCGCTTGCTGTCCA
TAAAACCGCCCAGTCTAGCTATCGCCATGTAAGCCCACTGCAAGCTACCTGCTTTCTCTT
TGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCA
CCGTTTCTGCGGACTGGCTTTCTACGTGTTCCGCTTCCTTTAGCAGCCCTTGCGCCCTGA
GTGCTTGCGGCAGCGTGAGCTTCAAAAGAATTGCCAGCTGGGGCGCCCTCTGGTAAGGTT
GGGAAGCCCTGCAAAGTAAACTGGATGGCTTTCTTGCCGCCAAGGATCTGATGGCGCAGG
GGATCAAGATCTGATCAAGAGACAGGATGACGGTCGTTTCGCATGCTTGAACAAGATGGA
TTGCACGCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAA
CAGACAATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTT
CTTTTTGTCAAGACCGACCTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGG
CTATCGTGGCTGGCCACGACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAA
GCGGGAAGGGACTGGCTGCTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCAC
CTTGCTCCTGCCGAGAAAGTATCCATCATGGCTGATGCAATGCGGCGGCTGCATACGCTT
GATCCGGCTACCTGCCCATTCGACCACCAAGCGAAACATCGCATCGAGCGAGCACGCACT
CGGATGGAAGCCGGTCTTGTCGATCAGGATGATCTGGACGAAGAGCATCAGGGGCTCGCG
CCAGCCGAACTGTTCGCCAGGCTCAAGGCGCGTATGCCGGATGGTGAGGATCTCGTCGTG
ACTCATGGCGATGCCTGCTTGCCGAATATCATGGTGGAAAATGGCCGCTTTTCTGGATTC
ATCGACTGTGGCCGGCTGGGTGTGGCGGACCGCTATCAGGACATAGCGTTGGCTACCCGT
GATATTGCTGAAGAGCTTGGCGGCGAATGGGCTGACCGCTTCCTCGTGCTTTACGGTATC
GCCGCTCCCGATTCGCAGCGCATCGCCTTCTATCGCCTTCTTGACGAGTTCTTCTGAGCG
GGACTCTGGGGTTCGCGAAATGACCGACCAAGCGACGCCCAACCGGTATCAGCTCACTCA
AAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCA
AAAGGCCAGCAAAAGGCCAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGG
CTCCGCCCCCCTGACGAGCATCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCCG
ACAGGACTATAAAGATACCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTT
CCGACCCTGCCGCTTACCGGATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTT
TCTCATAGCTCACGCTGTAGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGC
TGTGTGCACGAACCCCCCGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCTT
GAGTCCAACCCGGTAAGACACGACTTATCGCCACTGGCAGCAGCCACTGGTAACAGGATT
AGCAGAGCGAGGTATGTAGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGC
TACACTAGAAGGACAGTATTTGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAA
AGAGTTGGTAGCTCTTGATCCGGCAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTT
TGCAAGCAGCAGATTACGCGCAGAAAAAAAGGATTTCAAGAAGATCCTTTGATCTTTTCT
ACGGGGTCTGACGCTCAGTGGAACGAAAACTCACGTTAAGGGATTTTGGTCATGAGATTA
TCAAAAAGGATCTTCACCTAGATCCTTTTATAGTCCGGAAATACAGGAACGCACGCTGGA
TGGCCCTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGG
GTAATGTGGCCTGTACCCTCTGGTTGCATAGGTATTCATACGGTTAAAATTTATCAGGCG
CGATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCG
CGCTGAACGCGTTTTAGCGGTGCGTACAATTAAGGGATTATGGTAAATCCACTTACTGTC
TGCCCTCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAG
GATCGAGATCTTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAA
CAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAA
GTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGC
CAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTG
TTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGC
GAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAAT
TAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTTTGTTTAT
TTTTCTAAATACATTCAAATATGTATCCGCTCAT