SHROOM1 ORF clone pF1KSDA1960

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Flexi ORF Clone pF1KSDA1960

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Clone info.

Species

human

Clone Name

pF1KSDA1960 Sequence (with vector) Restriction Map

Product ID

FXC00957

HaloTag Clone PID

FHC00957

ORF Sequence

DNA sequence (2556 bp)
Protein sequence (852 aa)

Linker Type

Flexi_RBS type

more Linker info

Vector Type

pF1KM Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB384335]

Gene

KIAA1960

Symbol

SHROOM1

Alias : APXL2

Description

shroom family member 1, transcript variant 1

Original Clone ID

hk03842

Features of the cloned ORF sequence

Description

Length: 2556 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 852 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS54902.1 4.2e-200 100.0 SHROOM1 CCDS4161.1 1.9e-198 99.4 SHROOM1 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition HMMPfam IPR014800 138 236 PF08688 Apx/shroom IPR014799 543 824 PF08687 Apx/shroom ProfileScan IPR014800 145 233 PS51306 Apx/shroom IPR014799 543 825 PS51307 Apx/shroom
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_001166171 852 611179 100.0 100.0 XP_005271942 852 611179 100.0 100.0 XP_005271943 852 611179 100.0 100.0 XP_011541469 852 611179 100.0 100.0 NP_597713 847 611179 99.4 100.0 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pF1KSDA1960 Download

>KIAA1960  2556 bp
ATGGAGGCCCTGGGACCTGGGGGCGACCGCGCCTCCCCGGCCTCGTCCACTAGCAGCCTG
GACCTGTGGCATCTGTCCATGCGCGCGGACTCGGCCTACAGCTCTTTCTCCGCAGCCTCC
GGCGGCCCCGAGCCGCGCACGCAGTCGCCGGGGACAGACCTCCTTCCTTACCTAGACTGG
GACTACGTGCGTGTGGTTTGGGGCGGCCCGGGCCCCGCCCCGCCCGACGCTGCCCTTTGC
ACATCCCCGCGGCCCCGGCCCGCGGTTGCAGCCCGCAGTGGGCCGCAGCCAACAGAGGTC
CCGGGGACCCCGGGACCACTGAACAGGCAGGCCACCCCGCTGCTGTACGCGCTGGCGGCC
GAGGCGGAGGCCGCGGCGCAGGCTGCCGAGCCGCCCAGCCCGCCGGCCTCGAGGGCCGCC
TACCGCCAGCGGCTTCAGGGCGCGCAGCGGCGAGTGCTCCGGGAGACGTCGTTCCAGCGC
AAGGAGCTCCGCATGAGCCTGCCCGCCCGTCTGCGGCCCACTGTCCCAGCGCGGCCCCCG
GCGACTCACCCGCGCTCCGCCTCGCTCAGCCACCCGGGCGGGGAGGGGGAGCCGGCGCGC
TCCCGGGCTCCCGCGCCAGGAACTGCCGGCCGGGGTCCCCTCGCCAACCAGCAGCGGAAG
TGGTGCTTCTCAGAGCCAGGAAAGCTGGATCGTGTGGGTCGGGGCGGTGGGCCGGCGCGG
GAATGCCTGGGTGAGGCCTGCTCCAGCTCTGGCCTCCCTGGGCCCGAGCCCTTGGAGTTC
CAGCATCCGGCGCTGGCTAAGTTTGAAGATCACGAGGTCGGATGGCTGCCCGAGACGCAA
CCCCAAGGCTCCATGAACCTGGACTCCGGGTCCTTGAAGCTCGGTGATGCCTTCAGGCCC
GCCAGTCGGAGTCGGAGCGCTTCAGGCGAAGTCTTGGGTTCCTGGGGAGGATCAGGAGGG
ACCATACCCATTGTCCAGGCTGTTCCCCAAGGAGCAGAAACCCCCAGACCATTGTTTCAG
ACCAAACTTTCCAGGTTCTTGCCTCAGAAAGAGGCTGCGGTGATGTATCCTGCAGAGTTA
CCCCAGAGCAGCCCTGCTGACAGTGAACAGAGGGTCTCAGAGACCTGCATTGTGCCTGCC
TGGCTCCCCTCCCTTCCTGATGAAGTGTTCCTAGAAGAGGCCCCACTGGTCAGAATGAGA
TCACCACCAGACCCCCATGCCTCCCAGGGGCCCCCAGCCAGTGTCCATGCCTCTGACCAG
CCGTATGGAACTGGCTTAGGCCAAAGAACTGGCCAGGTTACAGTCCCCACAGAGTACCCG
CTCCATGAGTGTCCAGGAACTGCAGGGGCAGATGACTGCTGGCAGGGGGTGAATGGTTCT
GTAGGTATTTCCAGGCCCACAAGCCACACCCCCACTGGGACTGCAAATGATAACATCCCA
ACTATTGACCCCACTGGACTGACCACCAATCCCCCCACAGCTGCAGAGAGTGACCTCCTC
AAACCTGTCCCAGCTGATGCCTTGGGACTTTCAGGCAATGATACTCCAGGTCCCTCTCAC
AATACTGCCCTAGCCAGGGGCACTGGCCAGCCTGGTTCCAGGCCCACATGGCCTAGTCAG
TGCCTCGAGGAGCTGGTTCAGGAGCTGGCCAGATTAGATCCCTCTCTATGTGACCCTCTT
GCTTCCCAGCCCAGCCCAGAGCCACCCCTGGGCCTGCTGGATGGACTGATTCCTTTAGCA
GAGGTCCGGGCTGCAATGCGGCCTGCCTGTGGGGAGGCTGGAGAGGAGGCTGCCAGTACT
TTTGAGCCAGGGTCCTATCAGTTCAGCTTCACCCAGCTCCTGCCGGCTCCTCGGGAGGAG
ACAAGGCTTGAAAACCCTGCCACCCACCCTGTGCTTGACCAGCCATGTGGGCAGGGGCTC
CCTGCACCAAACAACAGCATCCAGGGCAAGAAAGTGGAGCTGGCCGCCCGCCTCCAAAAG
ATGCTTCAGGACCTTCACACGGAGCAGGAGCGGCTGCAGGGGGAGGCACAAGCGTGGGCC
AGGCGCCAAGCGGCTCTGGAGGCTGCAGTGCGCCAGGCCTGTGCCCCTCAGGAGCTGGAG
CGGTTCAGCCGGTTCATGGCCGACCTAGAGCGCGTGCTTGGCCTTCTGCTGCTGCTGGGC
AGTCGCCTGGCGCGCGTGCGCCGCGCCCTGGCCCGGGCGGCCTCAGACAGCGACCCTGAT
GAGCAGGCCTCCCTGCTGCAGCGACTCCGGCTCCTGCAGCGGCAGGAGGAGGACGCCAAG
GAGCTGAAGGAGCACGTAGCGCGGCGCGAGCGGGCCGTGCGGGAGGTGCTGGTGCGAGCA
CTACCGGTGGAGGAGCTGCGCGTCTATTGCGCCCTGCTGGCGGGCAAGGCCGCCGTCCTG
GCCCAGCAGCGCAACCTGGACGAGCGCATCCGCCTCCTTCAGGACCAACTGGACGCCATC
AGGGACGACCTTGGCCATCATGCCCCGTCTCCCAGCCCGGCGCGGCCCCCAGGGACCTGT
CCTCCAGTTCAGCCGCCCTTCCCTCTTCTCCTTACA

ORF Protein

Cloned ORF protein sequence for pF1KSDA1960 Download

>KIAA1960  852 aa
MEALGPGGDRASPASSTSSLDLWHLSMRADSAYSSFSAASGGPEPRTQSPGTDLLPYLDW
DYVRVVWGGPGPAPPDAALCTSPRPRPAVAARSGPQPTEVPGTPGPLNRQATPLLYALAA
EAEAAAQAAEPPSPPASRAAYRQRLQGAQRRVLRETSFQRKELRMSLPARLRPTVPARPP
ATHPRSASLSHPGGEGEPARSRAPAPGTAGRGPLANQQRKWCFSEPGKLDRVGRGGGPAR
ECLGEACSSSGLPGPEPLEFQHPALAKFEDHEVGWLPETQPQGSMNLDSGSLKLGDAFRP
ASRSRSASGEVLGSWGGSGGTIPIVQAVPQGAETPRPLFQTKLSRFLPQKEAAVMYPAEL
PQSSPADSEQRVSETCIVPAWLPSLPDEVFLEEAPLVRMRSPPDPHASQGPPASVHASDQ
PYGTGLGQRTGQVTVPTEYPLHECPGTAGADDCWQGVNGSVGISRPTSHTPTGTANDNIP
TIDPTGLTTNPPTAAESDLLKPVPADALGLSGNDTPGPSHNTALARGTGQPGSRPTWPSQ
CLEELVQELARLDPSLCDPLASQPSPEPPLGLLDGLIPLAEVRAAMRPACGEAGEEAAST
FEPGSYQFSFTQLLPAPREETRLENPATHPVLDQPCGQGLPAPNNSIQGKKVELAARLQK
MLQDLHTEQERLQGEAQAWARRQAALEAAVRQACAPQELERFSRFMADLERVLGLLLLLG
SRLARVRRALARAASDSDPDEQASLLQRLRLLQRQEEDAKELKEHVARRERAVREVLVRA
LPVEELRVYCALLAGKAAVLAQQRNLDERIRLLQDQLDAIRDDLGHHAPSPSPARPPGTC
PPVQPPFPLLLT

ORF+Vector

Nucleotide Sequence (with vector) for pF1KSDA1960 Download

>pF1KSDA1960  5695 bp
GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA
TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCTTTCGAAGGAGAT
AGAACCATGGAGGCCCTGGGACCTGGGGGCGACCGCGCCTCCCCGGCCTCGTCCACTAGC
AGCCTGGACCTGTGGCATCTGTCCATGCGCGCGGACTCGGCCTACAGCTCTTTCTCCGCA
GCCTCCGGCGGCCCCGAGCCGCGCACGCAGTCGCCGGGGACAGACCTCCTTCCTTACCTA
GACTGGGACTACGTGCGTGTGGTTTGGGGCGGCCCGGGCCCCGCCCCGCCCGACGCTGCC
CTTTGCACATCCCCGCGGCCCCGGCCCGCGGTTGCAGCCCGCAGTGGGCCGCAGCCAACA
GAGGTCCCGGGGACCCCGGGACCACTGAACAGGCAGGCCACCCCGCTGCTGTACGCGCTG
GCGGCCGAGGCGGAGGCCGCGGCGCAGGCTGCCGAGCCGCCCAGCCCGCCGGCCTCGAGG
GCCGCCTACCGCCAGCGGCTTCAGGGCGCGCAGCGGCGAGTGCTCCGGGAGACGTCGTTC
CAGCGCAAGGAGCTCCGCATGAGCCTGCCCGCCCGTCTGCGGCCCACTGTCCCAGCGCGG
CCCCCGGCGACTCACCCGCGCTCCGCCTCGCTCAGCCACCCGGGCGGGGAGGGGGAGCCG
GCGCGCTCCCGGGCTCCCGCGCCAGGAACTGCCGGCCGGGGTCCCCTCGCCAACCAGCAG
CGGAAGTGGTGCTTCTCAGAGCCAGGAAAGCTGGATCGTGTGGGTCGGGGCGGTGGGCCG
GCGCGGGAATGCCTGGGTGAGGCCTGCTCCAGCTCTGGCCTCCCTGGGCCCGAGCCCTTG
GAGTTCCAGCATCCGGCGCTGGCTAAGTTTGAAGATCACGAGGTCGGATGGCTGCCCGAG
ACGCAACCCCAAGGCTCCATGAACCTGGACTCCGGGTCCTTGAAGCTCGGTGATGCCTTC
AGGCCCGCCAGTCGGAGTCGGAGCGCTTCAGGCGAAGTCTTGGGTTCCTGGGGAGGATCA
GGAGGGACCATACCCATTGTCCAGGCTGTTCCCCAAGGAGCAGAAACCCCCAGACCATTG
TTTCAGACCAAACTTTCCAGGTTCTTGCCTCAGAAAGAGGCTGCGGTGATGTATCCTGCA
GAGTTACCCCAGAGCAGCCCTGCTGACAGTGAACAGAGGGTCTCAGAGACCTGCATTGTG
CCTGCCTGGCTCCCCTCCCTTCCTGATGAAGTGTTCCTAGAAGAGGCCCCACTGGTCAGA
ATGAGATCACCACCAGACCCCCATGCCTCCCAGGGGCCCCCAGCCAGTGTCCATGCCTCT
GACCAGCCGTATGGAACTGGCTTAGGCCAAAGAACTGGCCAGGTTACAGTCCCCACAGAG
TACCCGCTCCATGAGTGTCCAGGAACTGCAGGGGCAGATGACTGCTGGCAGGGGGTGAAT
GGTTCTGTAGGTATTTCCAGGCCCACAAGCCACACCCCCACTGGGACTGCAAATGATAAC
ATCCCAACTATTGACCCCACTGGACTGACCACCAATCCCCCCACAGCTGCAGAGAGTGAC
CTCCTCAAACCTGTCCCAGCTGATGCCTTGGGACTTTCAGGCAATGATACTCCAGGTCCC
TCTCACAATACTGCCCTAGCCAGGGGCACTGGCCAGCCTGGTTCCAGGCCCACATGGCCT
AGTCAGTGCCTCGAGGAGCTGGTTCAGGAGCTGGCCAGATTAGATCCCTCTCTATGTGAC
CCTCTTGCTTCCCAGCCCAGCCCAGAGCCACCCCTGGGCCTGCTGGATGGACTGATTCCT
TTAGCAGAGGTCCGGGCTGCAATGCGGCCTGCCTGTGGGGAGGCTGGAGAGGAGGCTGCC
AGTACTTTTGAGCCAGGGTCCTATCAGTTCAGCTTCACCCAGCTCCTGCCGGCTCCTCGG
GAGGAGACAAGGCTTGAAAACCCTGCCACCCACCCTGTGCTTGACCAGCCATGTGGGCAG
GGGCTCCCTGCACCAAACAACAGCATCCAGGGCAAGAAAGTGGAGCTGGCCGCCCGCCTC
CAAAAGATGCTTCAGGACCTTCACACGGAGCAGGAGCGGCTGCAGGGGGAGGCACAAGCG
TGGGCCAGGCGCCAAGCGGCTCTGGAGGCTGCAGTGCGCCAGGCCTGTGCCCCTCAGGAG
CTGGAGCGGTTCAGCCGGTTCATGGCCGACCTAGAGCGCGTGCTTGGCCTTCTGCTGCTG
CTGGGCAGTCGCCTGGCGCGCGTGCGCCGCGCCCTGGCCCGGGCGGCCTCAGACAGCGAC
CCTGATGAGCAGGCCTCCCTGCTGCAGCGACTCCGGCTCCTGCAGCGGCAGGAGGAGGAC
GCCAAGGAGCTGAAGGAGCACGTAGCGCGGCGCGAGCGGGCCGTGCGGGAGGTGCTGGTG
CGAGCACTACCGGTGGAGGAGCTGCGCGTCTATTGCGCCCTGCTGGCGGGCAAGGCCGCC
GTCCTGGCCCAGCAGCGCAACCTGGACGAGCGCATCCGCCTCCTTCAGGACCAACTGGAC
GCCATCAGGGACGACCTTGGCCATCATGCCCCGTCTCCCAGCCCGGCGCGGCCCCCAGGG
ACCTGTCCTCCAGTTCAGCCGCCCTTCCCTCTTCTCCTTACATACGTAGTTTAAACGAAT
TCGAGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGC
TGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGC
ATAACCCCTTGGGGCCTCTAAACGGGTCTTGAGGGGTTTTTTGCTGAAAGGAGGAACTAT
ATCCGGTTCGCTTGCTGTCCATAAAACCGCCCAGTCTAGCTATCGCCATGTAAGCCCACT
GCAAGCTACCTGCTTTCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCT
GACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTACGTGTTCCGCTTCCT
TTAGCAGCCCTTGCGCCCTGAGTGCTTGCGGCAGCGTGAGCTTCAAAAGAATTGCCAGCT
GGGGCGCCCTCTGGTAAGGTTGGGAAGCCCTGCAAAGTAAACTGGATGGCTTTCTTGCCG
CCAAGGATCTGATGGCGCAGGGGATCAAGATCTGATCAAGAGACAGGATGACGGTCGTTT
CGCATGCTTGAACAAGATGGATTGCACGCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTA
TTCGGCTATGACTGGGCACAACAGACAATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTG
TCAGCGCAGGGGCGCCCGGTTCTTTTTGTCAAGACCGACCTGTCCGGTGCCCTGAATGAA
CTGCAGGACGAGGCAGCGCGGCTATCGTGGCTGGCCACGACGGGCGTTCCTTGCGCAGCT
GTGCTCGACGTTGTCACTGAAGCGGGAAGGGACTGGCTGCTATTGGGCGAAGTGCCGGGG
CAGGATCTCCTGTCATCTCACCTTGCTCCTGCCGAGAAAGTATCCATCATGGCTGATGCA
ATGCGGCGGCTGCATACGCTTGATCCGGCTACCTGCCCATTCGACCACCAAGCGAAACAT
CGCATCGAGCGAGCACGCACTCGGATGGAAGCCGGTCTTGTCGATCAGGATGATCTGGAC
GAAGAGCATCAGGGGCTCGCGCCAGCCGAACTGTTCGCCAGGCTCAAGGCGCGTATGCCG
GATGGTGAGGATCTCGTCGTGACTCATGGCGATGCCTGCTTGCCGAATATCATGGTGGAA
AATGGCCGCTTTTCTGGATTCATCGACTGTGGCCGGCTGGGTGTGGCGGACCGCTATCAG
GACATAGCGTTGGCTACCCGTGATATTGCTGAAGAGCTTGGCGGCGAATGGGCTGACCGC
TTCCTCGTGCTTTACGGTATCGCCGCTCCCGATTCGCAGCGCATCGCCTTCTATCGCCTT
CTTGACGAGTTCTTCTGAGCGGGACTCTGGGGTTCGCGAAATGACCGACCAAGCGACGCC
CAACCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAAC
GCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCGTAAAAAGGCCGCG
TTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAAAAATCGACGCTCA
AGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGCGTTTCCCCCTGGAAGC
TCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCTGTCCGCCTTTCTC
CCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTATCTCAGTTCGGTGTAG
GTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCCCGACCGCTGCGCC
TTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGACTTATCGCCACTGGCA
GCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGGTGCTACAGAGTTCTTG
AAGTGGTGGCCTAACTACGGCTACACTAGAAGGACAGTATTTGGTATCTGCGCTCTGCTG
AAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAACAAACCACCGCT
GGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAAAAAAGGATTTCAA
GAAGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGAACGAAAACTCACGTTAA
GGGATTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTAGATCCTTTTATAGTCCGGA
AATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACCATGAAAAATGGCA
GCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTGCATAGGTATTCAT
ACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTT
ACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTACAATTAAGGGATT
ATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACCGCAGTACTCCGGC
CACGATGCGTCCGGCGTAGAGGATCGAGATCTTTTCAGCCTGATACAGATTAAATCAGAA
CGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCT
GACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCC
CATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTG
GGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCC
GGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCC
ATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTT
TCTACAAACTCTTTTGTTTATTTTTCTAAATACATTCAAATATGTATCCGCTCAT