Result of FASTA (ccds) for pF1KSDA1960
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1960, 852 aa
  1>>>pF1KSDA1960 852 - 852 aa - 852 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.0621+/-0.000818; mu= 6.5707+/- 0.049
 mean_var=249.3859+/-49.726, 0's: 0 Z-trim(116.2): 23  B-trim: 8 in 1/54
 Lambda= 0.081215
 statistics sampled from 16833 (16854) to 16833 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.8), E-opt: 0.2 (0.518), width:  16
 Scan time:  5.620

The best scores are:                                      opt bits E(32554)
CCDS54902.1 SHROOM1 gene_id:134549|Hs108|chr5      ( 852) 5833 696.8 4.2e-200
CCDS4161.1 SHROOM1 gene_id:134549|Hs108|chr5       ( 847) 5786 691.3 1.9e-198


>>CCDS54902.1 SHROOM1 gene_id:134549|Hs108|chr5           (852 aa)
 initn: 5833 init1: 5833 opt: 5833  Z-score: 3705.9  bits: 696.8 E(32554): 4.2e-200
Smith-Waterman score: 5833; 100.0% identity (100.0% similar) in 852 aa overlap (1-852:1-852)

               10        20        30        40        50        60
pF1KSD MEALGPGGDRASPASSTSSLDLWHLSMRADSAYSSFSAASGGPEPRTQSPGTDLLPYLDW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MEALGPGGDRASPASSTSSLDLWHLSMRADSAYSSFSAASGGPEPRTQSPGTDLLPYLDW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD DYVRVVWGGPGPAPPDAALCTSPRPRPAVAARSGPQPTEVPGTPGPLNRQATPLLYALAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DYVRVVWGGPGPAPPDAALCTSPRPRPAVAARSGPQPTEVPGTPGPLNRQATPLLYALAA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD EAEAAAQAAEPPSPPASRAAYRQRLQGAQRRVLRETSFQRKELRMSLPARLRPTVPARPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 EAEAAAQAAEPPSPPASRAAYRQRLQGAQRRVLRETSFQRKELRMSLPARLRPTVPARPP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD ATHPRSASLSHPGGEGEPARSRAPAPGTAGRGPLANQQRKWCFSEPGKLDRVGRGGGPAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 ATHPRSASLSHPGGEGEPARSRAPAPGTAGRGPLANQQRKWCFSEPGKLDRVGRGGGPAR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD ECLGEACSSSGLPGPEPLEFQHPALAKFEDHEVGWLPETQPQGSMNLDSGSLKLGDAFRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 ECLGEACSSSGLPGPEPLEFQHPALAKFEDHEVGWLPETQPQGSMNLDSGSLKLGDAFRP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD ASRSRSASGEVLGSWGGSGGTIPIVQAVPQGAETPRPLFQTKLSRFLPQKEAAVMYPAEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 ASRSRSASGEVLGSWGGSGGTIPIVQAVPQGAETPRPLFQTKLSRFLPQKEAAVMYPAEL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD PQSSPADSEQRVSETCIVPAWLPSLPDEVFLEEAPLVRMRSPPDPHASQGPPASVHASDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PQSSPADSEQRVSETCIVPAWLPSLPDEVFLEEAPLVRMRSPPDPHASQGPPASVHASDQ
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD PYGTGLGQRTGQVTVPTEYPLHECPGTAGADDCWQGVNGSVGISRPTSHTPTGTANDNIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PYGTGLGQRTGQVTVPTEYPLHECPGTAGADDCWQGVNGSVGISRPTSHTPTGTANDNIP
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD TIDPTGLTTNPPTAAESDLLKPVPADALGLSGNDTPGPSHNTALARGTGQPGSRPTWPSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 TIDPTGLTTNPPTAAESDLLKPVPADALGLSGNDTPGPSHNTALARGTGQPGSRPTWPSQ
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD CLEELVQELARLDPSLCDPLASQPSPEPPLGLLDGLIPLAEVRAAMRPACGEAGEEAAST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 CLEELVQELARLDPSLCDPLASQPSPEPPLGLLDGLIPLAEVRAAMRPACGEAGEEAAST
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD FEPGSYQFSFTQLLPAPREETRLENPATHPVLDQPCGQGLPAPNNSIQGKKVELAARLQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 FEPGSYQFSFTQLLPAPREETRLENPATHPVLDQPCGQGLPAPNNSIQGKKVELAARLQK
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD MLQDLHTEQERLQGEAQAWARRQAALEAAVRQACAPQELERFSRFMADLERVLGLLLLLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MLQDLHTEQERLQGEAQAWARRQAALEAAVRQACAPQELERFSRFMADLERVLGLLLLLG
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD SRLARVRRALARAASDSDPDEQASLLQRLRLLQRQEEDAKELKEHVARRERAVREVLVRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SRLARVRRALARAASDSDPDEQASLLQRLRLLQRQEEDAKELKEHVARRERAVREVLVRA
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KSD LPVEELRVYCALLAGKAAVLAQQRNLDERIRLLQDQLDAIRDDLGHHAPSPSPARPPGTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LPVEELRVYCALLAGKAAVLAQQRNLDERIRLLQDQLDAIRDDLGHHAPSPSPARPPGTC
              790       800       810       820       830       840

              850  
pF1KSD PPVQPPFPLLLT
       ::::::::::::
CCDS54 PPVQPPFPLLLT
              850  

>>CCDS4161.1 SHROOM1 gene_id:134549|Hs108|chr5            (847 aa)
 initn: 5119 init1: 5119 opt: 5786  Z-score: 3676.2  bits: 691.3 E(32554): 1.9e-198
Smith-Waterman score: 5786; 99.4% identity (99.4% similar) in 852 aa overlap (1-852:1-847)

               10        20        30        40        50        60
pF1KSD MEALGPGGDRASPASSTSSLDLWHLSMRADSAYSSFSAASGGPEPRTQSPGTDLLPYLDW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MEALGPGGDRASPASSTSSLDLWHLSMRADSAYSSFSAASGGPEPRTQSPGTDLLPYLDW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD DYVRVVWGGPGPAPPDAALCTSPRPRPAVAARSGPQPTEVPGTPGPLNRQATPLLYALAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 DYVRVVWGGPGPAPPDAALCTSPRPRPAVAARSGPQPTEVPGTPGPLNRQATPLLYALAA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD EAEAAAQAAEPPSPPASRAAYRQRLQGAQRRVLRETSFQRKELRMSLPARLRPTVPARPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 EAEAAAQAAEPPSPPASRAAYRQRLQGAQRRVLRETSFQRKELRMSLPARLRPTVPARPP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD ATHPRSASLSHPGGEGEPARSRAPAPGTAGRGPLANQQRKWCFSEPGKLDRVGRGGGPAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ATHPRSASLSHPGGEGEPARSRAPAPGTAGRGPLANQQRKWCFSEPGKLDRVGRGGGPAR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD ECLGEACSSSGLPGPEPLEFQHPALAKFEDHEVGWLPETQPQGSMNLDSGSLKLGDAFRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ECLGEACSSSGLPGPEPLEFQHPALAKFEDHEVGWLPETQPQGSMNLDSGSLKLGDAFRP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD ASRSRSASGEVLGSWGGSGGTIPIVQAVPQGAETPRPLFQTKLSRFLPQKEAAVMYPAEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ASRSRSASGEVLGSWGGSGGTIPIVQAVPQGAETPRPLFQTKLSRFLPQKEAAVMYPAEL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD PQSSPADSEQRVSETCIVPAWLPSLPDEVFLEEAPLVRMRSPPDPHASQGPPASVHASDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 PQSSPADSEQRVSETCIVPAWLPSLPDEVFLEEAPLVRMRSPPDPHASQGPPASVHASDQ
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD PYGTGLGQRTGQVTVPTEYPLHECPGTAGADDCWQGVNGSVGISRPTSHTPTGTANDNIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 PYGTGLGQRTGQVTVPTEYPLHECPGTAGADDCWQGVNGSVGISRPTSHTPTGTANDNIP
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD TIDPTGLTTNPPTAAESDLLKPVPADALGLSGNDTPGPSHNTALARGTGQPGSRPTWPSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 TIDPTGLTTNPPTAAESDLLKPVPADALGLSGNDTPGPSHNTALARGTGQPGSRPTWPSQ
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD CLEELVQELARLDPSLCDPLASQPSPEPPLGLLDGLIPLAEVRAAMRPACGEAGEEAAST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 CLEELVQELARLDPSLCDPLASQPSPEPPLGLLDGLIPLAEVRAAMRPACGEAGEEAAST
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD FEPGSYQFSFTQLLPAPREETRLENPATHPVLDQPCGQGLPAPNNSIQGKKVELAARLQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 FEPGSYQFSFTQLLPAPREETRLENPATHPVLDQPCGQGLPAPNNSIQGKKVELAARLQK
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD MLQDLHTEQERLQGEAQAWARRQAALEAAVRQACAPQELERFSRFMADLERVLGLLLLLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MLQDLHTEQERLQGEAQAWARRQAALEAAVRQACAPQELERFSRFMADLERVLGLLLLLG
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD SRLARVRRALARAASDSDPDEQASLLQRLRLLQRQEEDAKELKEHVARRERAVREVLVRA
       ::::::::::::::::::::::     :::::::::::::::::::::::::::::::::
CCDS41 SRLARVRRALARAASDSDPDEQ-----RLRLLQRQEEDAKELKEHVARRERAVREVLVRA
              730       740            750       760       770     

              790       800       810       820       830       840
pF1KSD LPVEELRVYCALLAGKAAVLAQQRNLDERIRLLQDQLDAIRDDLGHHAPSPSPARPPGTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LPVEELRVYCALLAGKAAVLAQQRNLDERIRLLQDQLDAIRDDLGHHAPSPSPARPPGTC
         780       790       800       810       820       830     

              850  
pF1KSD PPVQPPFPLLLT
       ::::::::::::
CCDS41 PPVQPPFPLLLT
         840       




852 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 07:49:53 2016 done: Thu Nov  3 07:49:53 2016
 Total Scan time:  5.620 Total Display time:  0.050

Function used was FASTA [36.3.4 Apr, 2011]
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