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SpecieshumanProduct IDFXC21063Cloning SiteSgfI-PmeIGenBank AccessionGeneKIBB6596SymbolTACR1
Alias : NK1R, NKIR, SPR, TAC1RDescriptiontachykinin receptor 1, transcript variant longOriginal Clone IDcs01196
Length: 1221 bp
Restriction map A
Restriction map B
Genomic Structure
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Length: 407 aa
Result of homology search against CCDS protein database (
FASTA output,
Multiple alignment)
Entry Exp ID% symbol CCDS1958.1 2.5e-127 100.0 TACR1 CCDS46345.1 5.9e-97 100.0 TACR1 CCDS3664.1 1.5e-73 60.1 TACR3 CCDS7293.1 1.1e-57 50.7 TACR2 CCDS8297.1 4e-26 34.3 GPR83
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
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Result of InterProScan
Search method interpro_ID From To Entry Definition FPrintScan IPR000046 2 13 PR01024 Neurokinin NK1 receptor IPR000046 13 25 PR01024 Neurokinin NK1 receptor IPR001681 28 39 PR00244 Neurokinin receptor IPR000276 34 58 PR00237 GPCR IPR001681 54 63 PR00244 Neurokinin receptor IPR000276 67 88 PR00237 GPCR IPR001681 107 117 PR00244 Neurokinin receptor IPR000276 112 134 PR00237 GPCR IPR001681 138 148 PR00244 Neurokinin receptor IPR000276 146 167 PR00237 GPCR IPR000046 165 179 PR01024 Neurokinin NK1 receptor IPR000046 181 196 PR01024 Neurokinin NK1 receptor IPR001681 196 205 PR00244 Neurokinin receptor IPR000276 197 220 PR00237 GPCR IPR001681 217 230 PR00244 Neurokinin receptor IPR000276 246 270 PR00237 GPCR IPR000046 270 280 PR01024 Neurokinin NK1 receptor IPR001681 280 291 PR00244 Neurokinin receptor IPR000276 287 313 PR00237 GPCR IPR001681 306 324 PR00244 Neurokinin receptor IPR000046 343 360 PR01024 Neurokinin NK1 receptor IPR000046 360 377 PR01024 Neurokinin NK1 receptor IPR000046 377 390 PR01024 Neurokinin NK1 receptor IPR000046 390 406 PR01024 Neurokinin NK1 receptor HMMPfam IPR000276 49 305 PF00001 GPCR ProfileScan IPR017452 49 305 PS50262 GPCR
Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length SOSUI2 1 32 IVLWAAAYTVIVVTSVVGNVVVM 54 PRIMARY 23 2 82 AAFNTVVNFTYAVHNEWYYGLFY 104 SECONDARY 23 3 108 HNFFPIAAVFASIYSMTAVAFDR 130 PRIMARY 23 4 143 SATATKVVICVIWVLALLLAFP 164 PRIMARY 22 5 200 VTVLIYFLPLLVIGYAYTVVGIT 222 PRIMARY 23 6 249 MMIVVVCTFAICWLPFHIFFLLP 271 PRIMARY 23 7 282 FIQQVYLAIMWLAMSSTMYNPII 304 SECONDARY 23
Result of homology search against disease genes in OMIM database(FASTA output,
Multiple alignment)
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_001049 407 162323 100.0 100.0 NP_001050 465 162332,614840 60.1 96.3 NP_001048 398 162321 50.7 89.7 XP_005263090 381 162642 30.4 82.6 XP_005263091 381 162642 30.4 82.6 Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.comCloned ORF Nucleotide sequence for pF1KB6596 Download>KIBB6596 1221 bp ATGGATAACGTCCTCCCGGTGGACTCAGACCTCTCCCCAAACATCTCCACTAACACCTCG GAACCCAATCAGTTCGTGCAACCAGCCTGGCAAATTGTCCTTTGGGCAGCTGCCTACACG GTCATTGTGGTGACCTCTGTGGTGGGCAACGTGGTAGTGATGTGGATCATCTTAGCCCAC AAAAGAATGAGGACAGTGACGAACTATTTTCTGGTGAACCTGGCCTTCGCGGAGGCCTCC ATGGCTGCATTCAATACAGTGGTGAACTTCACCTATGCTGTCCACAACGAATGGTACTAC GGCCTGTTCTACTGCAAGTTCCACAACTTCTTTCCCATCGCCGCTGTCTTCGCCAGTATC TACTCCATGACGGCTGTGGCCTTTGATAGGTACATGGCCATCATACATCCCCTCCAGCCC CGGCTGTCAGCCACAGCCACCAAAGTGGTCATCTGTGTCATCTGGGTCCTGGCTCTCCTG CTGGCCTTCCCCCAGGGCTACTACTCAACCACAGAGACCATGCCCAGCAGAGTCGTGTGC ATGATCGAATGGCCAGAGCATCCGAACAAGATTTATGAGAAAGTGTACCACATCTGTGTG ACTGTGCTGATCTACTTCCTCCCCCTGCTGGTGATTGGCTATGCATACACCGTAGTGGGA ATCACACTATGGGCCAGTGAGATCCCCGGGGACTCCTCTGACCGCTACCACGAGCAAGTC TCTGCCAAGCGCAAGGTGGTCAAAATGATGATTGTCGTGGTGTGCACCTTCGCCATCTGC TGGCTGCCCTTCCACATCTTCTTCCTCCTGCCCTACATCAACCCAGATCTCTACCTGAAG AAGTTTATCCAGCAGGTCTACCTGGCCATCATGTGGCTGGCCATGAGCTCCACCATGTAC AACCCCATCATCTACTGCTGCCTCAATGACAGGTTCCGTCTGGGCTTCAAGCATGCCTTC CGGTGCTGCCCCTTCATCAGCGCCGGCGACTATGAGGGGCTGGAAATGAAATCCACCCGG TATCTCCAGACCCAGGGCAGTGTGTACAAAGTCAGCCGCCTGGAGACCACCATCTCCACA GTGGTGGGGGCCCACGAGGAGGAGCCAGAGGACGGCCCCAAGGCCACACCCTCGTCCCTA GACCTGACCTCCAACTGCTCTTCACGAAGTGACTCCAAGACCATGACAGAGAGCTTCAGC TTCTCCTCCAATGTGCTCTCC
Cloned ORF protein sequence for pF1KB6596 Download>KIBB6596 407 aa MDNVLPVDSDLSPNISTNTSEPNQFVQPAWQIVLWAAAYTVIVVTSVVGNVVVMWIILAH KRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASI YSMTAVAFDRYMAIIHPLQPRLSATATKVVICVIWVLALLLAFPQGYYSTTETMPSRVVC MIEWPEHPNKIYEKVYHICVTVLIYFLPLLVIGYAYTVVGITLWASEIPGDSSDRYHEQV SAKRKVVKMMIVVVCTFAICWLPFHIFFLLPYINPDLYLKKFIQQVYLAIMWLAMSSTMY NPIIYCCLNDRFRLGFKHAFRCCPFISAGDYEGLEMKSTRYLQTQGSVYKVSRLETTIST VVGAHEEEPEDGPKATPSSLDLTSNCSSRSDSKTMTESFSFSSNVLS
Nucleotide Sequence (with vector) for pF1KB6596 Download>pF1KB6596 4334 bp GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGGATAACGTC CTCCCGGTGGACTCAGACCTCTCCCCAAACATCTCCACTAACACCTCGGAACCCAATCAG TTCGTGCAACCAGCCTGGCAAATTGTCCTTTGGGCAGCTGCCTACACGGTCATTGTGGTG ACCTCTGTGGTGGGCAACGTGGTAGTGATGTGGATCATCTTAGCCCACAAAAGAATGAGG ACAGTGACGAACTATTTTCTGGTGAACCTGGCCTTCGCGGAGGCCTCCATGGCTGCATTC AATACAGTGGTGAACTTCACCTATGCTGTCCACAACGAATGGTACTACGGCCTGTTCTAC TGCAAGTTCCACAACTTCTTTCCCATCGCCGCTGTCTTCGCCAGTATCTACTCCATGACG GCTGTGGCCTTTGATAGGTACATGGCCATCATACATCCCCTCCAGCCCCGGCTGTCAGCC ACAGCCACCAAAGTGGTCATCTGTGTCATCTGGGTCCTGGCTCTCCTGCTGGCCTTCCCC CAGGGCTACTACTCAACCACAGAGACCATGCCCAGCAGAGTCGTGTGCATGATCGAATGG CCAGAGCATCCGAACAAGATTTATGAGAAAGTGTACCACATCTGTGTGACTGTGCTGATC TACTTCCTCCCCCTGCTGGTGATTGGCTATGCATACACCGTAGTGGGAATCACACTATGG GCCAGTGAGATCCCCGGGGACTCCTCTGACCGCTACCACGAGCAAGTCTCTGCCAAGCGC AAGGTGGTCAAAATGATGATTGTCGTGGTGTGCACCTTCGCCATCTGCTGGCTGCCCTTC CACATCTTCTTCCTCCTGCCCTACATCAACCCAGATCTCTACCTGAAGAAGTTTATCCAG CAGGTCTACCTGGCCATCATGTGGCTGGCCATGAGCTCCACCATGTACAACCCCATCATC TACTGCTGCCTCAATGACAGGTTCCGTCTGGGCTTCAAGCATGCCTTCCGGTGCTGCCCC TTCATCAGCGCCGGCGACTATGAGGGGCTGGAAATGAAATCCACCCGGTATCTCCAGACC CAGGGCAGTGTGTACAAAGTCAGCCGCCTGGAGACCACCATCTCCACAGTGGTGGGGGCC CACGAGGAGGAGCCAGAGGACGGCCCCAAGGCCACACCCTCGTCCCTAGACCTGACCTCC AACTGCTCTTCACGAAGTGACTCCAAGACCATGACAGAGAGCTTCAGCTTCTCCTCCAAT GTGCTCTCCGTTTAAACGAATTCGAGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGC AGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGC CACCGCTGAGCAATAACTAGCATAACCCCTTGGGGCCTCTAAACGGGTCTTGAGGGGTTT TTTGCTGAAAGGAGGAACTATATCCGGTTCGCTTGCTGTCCATAAAACCGCCCAGTCTAG CTATCGCCATGTAAGCCCACTGCAAGCTACCTGCTTTCTCTTTGCGCTTGCGTTTTCCCT TGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGC TTTCTACGTGTTCCGCTTCCTTTAGCAGCCCTTGCGCCCTGAGTGCTTGCGGCAGCGTGA GCTTCAAAAGAATTGCCAGCTGGGGCGCCCTCTGGTAAGGTTGGGAAGCCCTGCAAAGTA AACTGGATGGCTTTCTTGCCGCCAAGGATCTGATGGCGCAGGGGATCAAGATCTGATCAA GAGACAGGATGACGGTCGTTTCGCATGCTTGAACAAGATGGATTGCACGCAGGTTCTCCG GCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAACAGACAATCGGCTGCTCT GATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTTTGTCAAGACCGAC CTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGGCTATCGTGGCTGGCCACG ACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAGCGGGAAGGGACTGGCTG CTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCACCTTGCTCCTGCCGAGAAA GTATCCATCATGGCTGATGCAATGCGGCGGCTGCATACGCTTGATCCGGCTACCTGCCCA TTCGACCACCAAGCGAAACATCGCATCGAGCGAGCACGCACTCGGATGGAAGCCGGTCTT GTCGATCAGGATGATCTGGACGAAGAGCATCAGGGGCTCGCGCCAGCCGAACTGTTCGCC AGGCTCAAGGCGCGTATGCCGGATGGTGAGGATCTCGTCGTGACTCATGGCGATGCCTGC TTGCCGAATATCATGGTGGAAAATGGCCGCTTTTCTGGATTCATCGACTGTGGCCGGCTG GGTGTGGCGGACCGCTATCAGGACATAGCGTTGGCTACCCGTGATATTGCTGAAGAGCTT GGCGGCGAATGGGCTGACCGCTTCCTCGTGCTTTACGGTATCGCCGCTCCCGATTCGCAG CGCATCGCCTTCTATCGCCTTCTTGACGAGTTCTTCTGAGCGGGACTCTGGGGTTCGAAA TGACCGACCAAGCGACGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATC CACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAG GAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCA TCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCA GGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGG ATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAG GTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGT TCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACA CGACTTATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGG CGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGACAGTATT TGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATC CGGCAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCG CAGAAAAAAAGGATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTG GAACGAAAACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTA GATCCTTTTATAGTCCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGT GAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTC TGGTTGCATAGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGG GTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGG TGCGTACAATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGA TAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCTTTTCAGCCT GATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAG TAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGA TGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAA AGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCC TGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGT GGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGA CGGATGGCCTTTTTGCGTTTCTACAAACTCTTTTGTTTATTTTTCTAAATACATTCAAAT ATGTATCCGCTCAT
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