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SpecieshumanProduct IDFXC11507Cloning SiteSgfI-PmeIGeneKIBB4099SymbolGLRA2
Alias : GLRDescriptionglycine receptor, alpha 2, transcript variant 1Original Clone IDfk00640
Length: 1356 bp
Restriction map A
Restriction map B
Genomic Structure
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Length: 452 aa
Result of homology search against CCDS protein database (
FASTA output,
Multiple alignment)
Entry Exp ID% symbol CCDS14160.1 3.8e-202 100.0 GLRA2 CCDS48085.1 9.9e-202 99.6 GLRA2 CCDS55371.1 3.9e-161 100.0 GLRA2 CCDS43283.1 4.6e-159 80.6 GLRA3 CCDS4320.1 9.1e-154 79.4 GLRA1
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
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Result of InterProScan
Search method interpro_ID From To Entry Definition FPrintScan IPR008129 23 43 PR01675 Glycine receptor alpha2 IPR008127 41 54 PR01673 Glycine receptor alpha IPR006201 93 109 PR00252 Neurotransmitter-gated ion-channel IPR008127 108 126 PR01673 Glycine receptor alpha IPR006201 126 137 PR00252 Neurotransmitter-gated ion-channel IPR006201 172 186 PR00252 Neurotransmitter-gated ion-channel IPR006201 248 260 PR00252 Neurotransmitter-gated ion-channel IPR006028 257 277 PR00253 Gamma-aminobutyric acid A receptor IPR006028 283 304 PR00253 Gamma-aminobutyric acid A receptor IPR006028 317 338 PR00253 Gamma-aminobutyric acid A receptor IPR008127 336 349 PR01673 Glycine receptor alpha IPR008129 356 367 PR01675 Glycine receptor alpha2 IPR008129 388 398 PR01675 Glycine receptor alpha2 IPR006028 421 441 PR00253 Gamma-aminobutyric acid A receptor HMMPfam IPR006202 47 254 PF02931 Neurotransmitter-gated ion-channel ligand-binding IPR006029 261 347 PF02932 Neurotransmitter-gated ion-channel transmembrane domain HMMTigr IPR006201 41 441 TIGR00860 Neurotransmitter-gated ion-channel
Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length SOSUI2 1 255 GYYLIQMYIPSLLIVILSWVSFW 277 PRIMARY 23 2 318 DIWMAVCLLFVFAALLEYAAVNF 340 PRIMARY 23
Result of homology search against disease genes in OMIM database(FASTA output,
Multiple alignment)
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_001112357 452 305990 100.0 100.0 NP_002054 452 305990 100.0 100.0 NP_001112358 452 305990 99.6 100.0 XP_016884916 452 305990 99.6 100.0 XP_011543798 436 305990 99.5 95.6 Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.comCloned ORF Nucleotide sequence for pF1KB4099 Download>KIBB4099 1356 bp ATGAACCGGCAGCTAGTGAACATTTTGACAGCCTTGTTTGCATTTTTCTTAGAGACAAAC CACTTCAGGACGGCTTTCTGCAAAGACCATGACTCCAGGTCTGGAAAACAACCTTCACAG ACCCTATCTCCTTCAGATTTCTTGGACAAGTTAATGGGAAGGACATCAGGATATGATGCA AGAATCAGGCCAAATTTTAAAGGTCCTCCAGTAAACGTTACTTGCAATATTTTTATCAAC AGTTTTGGATCAGTCACAGAAACGACCATGGACTACCGAGTGAATATTTTTCTGAGACAA CAGTGGAATGATTCACGGCTGGCGTACAGTGAGTACCCAGATGACTCCCTGGACTTGGAC CCATCCATGCTAGACTCCATTTGGAAACCAGATTTGTTCTTTGCCAATGAGAAGGGTGCC AACTTCCACGATGTCACCACTGACAACAAATTGCTACGGATTTCGAAAAATGGCAAAGTG CTCTACAGTATCAGACTCACCTTGACTTTATCCTGTCCCATGGACTTGAAGAACTTTCCG ATGGATGTCCAGACCTGTACAATGCAGCTGGAGAGTTTTGGGTACACGATGAATGACCTG ATATTTGAGTGGTTAAGTGATGGTCCAGTGCAAGTTGCTGAAGGATTGACCCTGCCCCAG TTTATTTTGAAAGAAGAGAAGGAACTTGGCTACTGTACAAAGCACTACAACACTGGAAAG TTTACCTGCATTGAGGTCAAGTTTCATCTGGAACGCCAAATGGGATATTATTTGATCCAG ATGTACATCCCAAGCCTGCTTATAGTAATTTTGTCCTGGGTTTCCTTTTGGATAAATATG GATGCAGCCCCTGCCAGGGTCGCACTGGGCATCACCACAGTCTTAACGATGACCACCCAG AGTTCAGGCTCCAGGGCATCTCTGCCAAAGGTCTCCTATGTAAAAGCGATTGACATCTGG ATGGCGGTGTGCCTTCTGTTTGTGTTTGCTGCCTTACTGGAATACGCAGCGGTGAACTTC GTCTCCAGGCAACACAAGGAGTTCCTGCGCCTCCGAAGAAGACAGAAGAGGCAGAATAAG GAAGAAGACGTTACTCGTGAAAGTCGTTTTAATTTTAGCGGTTATGGGATGGGTCACTGC CTCCAAGTGAAAGATGGAACAGCTGTCAAGGCCACACCTGCCAACCCACTCCCACAACCG CCAAAAGATGGAGATGCTATCAAGAAGAAGTTTGTGGACCGGGCAAAAAGGATTGACACG ATATCTCGAGCTGCCTTCCCATTGGCCTTCCTCATTTTCAACATCTTTTACTGGATCACA TACAAGATCATTCGGCATGAAGATGTCCACAAGAAA
Cloned ORF protein sequence for pF1KB4099 Download>KIBB4099 452 aa MNRQLVNILTALFAFFLETNHFRTAFCKDHDSRSGKQPSQTLSPSDFLDKLMGRTSGYDA RIRPNFKGPPVNVTCNIFINSFGSVTETTMDYRVNIFLRQQWNDSRLAYSEYPDDSLDLD PSMLDSIWKPDLFFANEKGANFHDVTTDNKLLRISKNGKVLYSIRLTLTLSCPMDLKNFP MDVQTCTMQLESFGYTMNDLIFEWLSDGPVQVAEGLTLPQFILKEEKELGYCTKHYNTGK FTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQ SSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVSRQHKEFLRLRRRQKRQNK EEDVTRESRFNFSGYGMGHCLQVKDGTAVKATPANPLPQPPKDGDAIKKKFVDRAKRIDT ISRAAFPLAFLIFNIFYWITYKIIRHEDVHKK
Nucleotide Sequence (with vector) for pF1KB4099 Download>pF1KB4099 4469 bp GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGAACCGGCAG CTAGTGAACATTTTGACAGCCTTGTTTGCATTTTTCTTAGAGACAAACCACTTCAGGACG GCTTTCTGCAAAGACCATGACTCCAGGTCTGGAAAACAACCTTCACAGACCCTATCTCCT TCAGATTTCTTGGACAAGTTAATGGGAAGGACATCAGGATATGATGCAAGAATCAGGCCA AATTTTAAAGGTCCTCCAGTAAACGTTACTTGCAATATTTTTATCAACAGTTTTGGATCA GTCACAGAAACGACCATGGACTACCGAGTGAATATTTTTCTGAGACAACAGTGGAATGAT TCACGGCTGGCGTACAGTGAGTACCCAGATGACTCCCTGGACTTGGACCCATCCATGCTA GACTCCATTTGGAAACCAGATTTGTTCTTTGCCAATGAGAAGGGTGCCAACTTCCACGAT GTCACCACTGACAACAAATTGCTACGGATTTCGAAAAATGGCAAAGTGCTCTACAGTATC AGACTCACCTTGACTTTATCCTGTCCCATGGACTTGAAGAACTTTCCGATGGATGTCCAG ACCTGTACAATGCAGCTGGAGAGTTTTGGGTACACGATGAATGACCTGATATTTGAGTGG TTAAGTGATGGTCCAGTGCAAGTTGCTGAAGGATTGACCCTGCCCCAGTTTATTTTGAAA GAAGAGAAGGAACTTGGCTACTGTACAAAGCACTACAACACTGGAAAGTTTACCTGCATT GAGGTCAAGTTTCATCTGGAACGCCAAATGGGATATTATTTGATCCAGATGTACATCCCA AGCCTGCTTATAGTAATTTTGTCCTGGGTTTCCTTTTGGATAAATATGGATGCAGCCCCT GCCAGGGTCGCACTGGGCATCACCACAGTCTTAACGATGACCACCCAGAGTTCAGGCTCC AGGGCATCTCTGCCAAAGGTCTCCTATGTAAAAGCGATTGACATCTGGATGGCGGTGTGC CTTCTGTTTGTGTTTGCTGCCTTACTGGAATACGCAGCGGTGAACTTCGTCTCCAGGCAA CACAAGGAGTTCCTGCGCCTCCGAAGAAGACAGAAGAGGCAGAATAAGGAAGAAGACGTT ACTCGTGAAAGTCGTTTTAATTTTAGCGGTTATGGGATGGGTCACTGCCTCCAAGTGAAA GATGGAACAGCTGTCAAGGCCACACCTGCCAACCCACTCCCACAACCGCCAAAAGATGGA GATGCTATCAAGAAGAAGTTTGTGGACCGGGCAAAAAGGATTGACACGATATCTCGAGCT GCCTTCCCATTGGCCTTCCTCATTTTCAACATCTTTTACTGGATCACATACAAGATCATT CGGCATGAAGATGTCCACAAGAAAGTTTAAACGAATTCGAGCTCGGTACCCGGGGATCCT CTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGC TGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGCCTCTAAACG GGTCTTGAGGGGTTTTTTGCTGAAAGGAGGAACTATATCCGGTTCGCTTGCTGTCCATAA AACCGCCCAGTCTAGCTATCGCCATGTAAGCCCACTGCAAGCTACCTGCTTTCTCTTTGC GCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCG TTTCTGCGGACTGGCTTTCTACGTGTTCCGCTTCCTTTAGCAGCCCTTGCGCCCTGAGTG CTTGCGGCAGCGTGAGCTTCAAAAGAATTGCCAGCTGGGGCGCCCTCTGGTAAGGTTGGG AAGCCCTGCAAAGTAAACTGGATGGCTTTCTTGCCGCCAAGGATCTGATGGCGCAGGGGA TCAAGATCTGATCAAGAGACAGGATGACGGTCGTTTCGCATGCTTGAACAAGATGGATTG CACGCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAACAG ACAATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTT TTTGTCAAGACCGACCTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGGCTA TCGTGGCTGGCCACGACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAGCG GGAAGGGACTGGCTGCTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCACCTT GCTCCTGCCGAGAAAGTATCCATCATGGCTGATGCAATGCGGCGGCTGCATACGCTTGAT CCGGCTACCTGCCCATTCGACCACCAAGCGAAACATCGCATCGAGCGAGCACGCACTCGG ATGGAAGCCGGTCTTGTCGATCAGGATGATCTGGACGAAGAGCATCAGGGGCTCGCGCCA GCCGAACTGTTCGCCAGGCTCAAGGCGCGTATGCCGGATGGTGAGGATCTCGTCGTGACT CATGGCGATGCCTGCTTGCCGAATATCATGGTGGAAAATGGCCGCTTTTCTGGATTCATC GACTGTGGCCGGCTGGGTGTGGCGGACCGCTATCAGGACATAGCGTTGGCTACCCGTGAT ATTGCTGAAGAGCTTGGCGGCGAATGGGCTGACCGCTTCCTCGTGCTTTACGGTATCGCC GCTCCCGATTCGCAGCGCATCGCCTTCTATCGCCTTCTTGACGAGTTCTTCTGAGCGGGA CTCTGGGGTTCGAAATGACCGACCAAGCGACGCCCAACCGGTATCAGCTCACTCAAAGGC GGTAATACGGTTATCCACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGG CCAGCAAAAGGCCAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCG CCCCCCTGACGAGCATCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGG ACTATAAAGATACCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGAC CCTGCCGCTTACCGGATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCA TAGCTCACGCTGTAGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGT GCACGAACCCCCCGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTC CAACCCGGTAAGACACGACTTATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAG AGCGAGGTATGTAGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACAC TAGAAGGACAGTATTTGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGT TGGTAGCTCTTGATCCGGCAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAA GCAGCAGATTACGCGCAGAAAAAAAGGATTTCAAGAAGATCCTTTGATCTTTTCTACGGG GTCTGACGCTCAGTGGAACGAAAACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAA AAGGATCTTCACCTAGATCCTTTTATAGTCCGGAAATACAGGAACGCACGCTGGATGGCC CTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAAT GTGGCCTGTACCCTCTGGTTGCATAGGTATTCATACGGTTAAAATTTATCAGGCGCGATT GCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTG AACGCGTTTTAGCGGTGCGTACAATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCC TCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCG AGATCTTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAA TTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAA ACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGC ATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGT CGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGC AACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGC AGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTTTGTTTATTTTTC TAAATACATTCAAATATGTATCCGCTCAT
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