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SpecieshumanProduct IDFXC11619Cloning SiteSgfI-PmeIGeneKIBB3518SymbolSTRN4
Alias : PPP2R6C, ZIN, zinedinDescriptionstriatin, calmodulin binding protein 4, transcript variant 2Original Clone IDhf00718b
Length: 2280 bp
Restriction map A
Restriction map B
Genomic Structure
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Length: 760 aa
Result of homology search against CCDS protein database (
FASTA output,
Multiple alignment)
Entry Exp ID% symbol CCDS42581.1 7.9e-165 100.0 STRN4 CCDS12690.1 1.8e-162 99.1 STRN4 CCDS9641.1 3.2e-48 54.7 STRN3 CCDS41938.1 9.3e-48 53.0 STRN3 CCDS1784.1 2.6e-45 50.8 STRN
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
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Result of InterProScan
Search method interpro_ID From To Entry Definition FPrintScan IPR020472 460 474 PR00320 G-protein beta WD-40 repeat IPR020472 566 580 PR00320 G-protein beta WD-40 repeat IPR020472 701 715 PR00320 G-protein beta WD-40 repeat HMMPfam IPR013258 64 196 PF08232 Striatin IPR019781 435 473 PF00400 WD40 repeat IPR019781 489 526 PF00400 WD40 repeat IPR019781 544 579 PF00400 WD40 repeat IPR019781 676 714 PF00400 WD40 repeat IPR019781 728 759 PF00400 WD40 repeat HMMSmart IPR001680 434 473 SM00320 WD40 repeat IPR001680 487 526 SM00320 WD40 repeat IPR001680 540 579 SM00320 WD40 repeat IPR001680 584 626 SM00320 WD40 repeat IPR001680 629 672 SM00320 WD40 repeat IPR001680 675 714 SM00320 WD40 repeat IPR001680 717 760 SM00320 WD40 repeat ProfileScan NULL 1 17 PS51257 NULL IPR019782 441 482 PS50082 WD40 repeat 2 IPR017986 441 760 PS50294 WD40-repeat-containing domain IPR019782 494 527 PS50082 WD40 repeat 2 IPR019782 547 579 PS50082 WD40 repeat 2 IPR019782 682 723 PS50082 WD40 repeat 2
Result of homology search against disease genes in OMIM database(FASTA output,
Multiple alignment)
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_001034966 760 614767 100.0 100.0 NP_037535 753 614767 99.1 100.0 XP_006723235 768 614767 97.2 100.0 XP_006723237 641 614767 100.0 84.3 XP_016882206 641 614767 100.0 84.3 Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.comCloned ORF Nucleotide sequence for pF1KB3518 Download>KIBB3518 2280 bp ATGATGGAGGAGCGAGCGGCCGCCGCGGTCGCCGCCGCCGCCTCCTCCTGCCGTCCGCTC GGCTCAGGCGCGGGCCCTGGCCCCACTGGGGCGGCCCCGGTCTCCGCCCCTGCCCCCGGG CCGGGCCCGGCAGGTAAGGGAGGCGGCGGCGGAGGCAGCCCCGGGCCCACGGCGGGCCCG GAGCCCCTGAGCCTGCCGGGGATCCTGCACTTTATCCAGCACGAGTGGGCGCGCTTCGAA GCCGAGAAAGCCCGCTGGGAGGCCGAGCGCGCCGAGTTACAGGCTCAGGTGGCCTTCCTT CAGGGAGAGAGGAAAGGGCAGGAGAATCTAAAGACGGACCTGGTGCGGCGGATCAAGATG CTAGAGTATGCGCTGAAGCAGGAAAGGGCCAAATATCATAAACTGAAGTTTGGGACAGAC CTGAACCAGGGGGAGAAGAAAGCAGATGTGTCAGAACAAGTCTCCAATGGCCCCGTGGAA TCGGTCACCCTGGAGAACAGCCCGTTGGTGTGGAAGGAGGGGCGGCAGCTTCTCCGACAG TACCTGGAAGAGGTGGGCTACACAGACACCATCCTCGACATGCGGTCCAAGCGCGTCCGT TCCCTGCTGGGCCGCTCGCTGGAGCTCAACGGGGCAGTGGAGCCGAGTGAAGGGGCCCCC AGGGCTCCACCAGGCCCTGCAGGGCTCAGTGGTGGGGAGTCGCTGCTGGTGAAACAGATC GAGGAGCAGATAAAGAGGAACGCGGCAGGCAAAGATGGCAAAGAGCGCTTGGGCGGCTCA GTGCTGGGGCAGATCCCCTTCCTGCAGAACTGCGAGGACGAAGACAGCGACGAGGACGAT GAGCTGGACAGCGTGCAGCACAAGAAGCAGCGTGTGAAGCTCCCATCCAAGGCTCTGGTG CCCGAAATGGAAGACGAGGATGAGGAAGACGACTCTGAGGATGCTATCAATGAGTTTGAT TTCCTGGGCTCAGGAGAGGATGGGGAAGGGGCTCCAGACCCTCGGCGGTGCACTGTGGAT GGGAGCCCCCATGAGCTGGAAAGCCGTCGGGTCAAACTCCAAGGCATTCTGGCTGACCTG CGGGATGTGGATGGGCTGCCCCCAAAAGTGACTGGCCCGCCTCCTGGCACACCCCAGCCC CGGCCACATGAAGGTTCCTTTGGCTTCTCCTCAGACGTCTTCATCATGGACACTATCGGG GGCGGGGAGGTGAGCCTGGGGGACTTGGCAGATCTCACCGTCACCAACGACAACGACCTC AGCTGCGATCTGTCTGACAGCAAAGATGCTTTTAAGAAGACGTGGAACCCCAAGTTCACC CTGCGCTCGCACTACGACGGCATTCGTTCCCTGGCCTTCCACCACAGCCAGTCGGCTCTG CTCACCGCCTCCGAGGACGGCACGCTCAAGCTCTGGAACCTGCAGAAGGCGGTCACGGCC AAGAAGAATGCGGCGCTAGATGTGGAACCTATACATGCTTTCCGGGCTCACAGGGGCCCA GTGTTGGCTGTGGCTATGGGCAGCAACAGTGAATACTGCTACAGTGGCGGGGCAGATGCC TGCATCCATAGTTGGAAGATTCCAGACCTCAGCATGGATCCCTATGATGGCTACGACCCA AGCGTGCTGAGCCACGTCCTGGAGGGCCACGGGGACGCCGTGTGGGGCCTGGCCTTCAGT CCCACCTCCCAGCGCCTGGCCTCCTGTTCTGCTGATGGCACCGTCCGCATCTGGGACCCC AGCAGCAGCAGCCCGGCCTGCCTCTGCACCTTCCCCACAGCCAGCGAGCACGGGGTCCCC ACCTCAGTGGCCTTCACCAGCACCGAGCCTGCCCACATCGTGGCCTCCTTCCGCTCTGGC GACACCGTCTTGTATGACATGGAGGTTGGCAGTGCCCTCCTCACGCTGGAGTCCCGGGGC AGCAGCGGTCCAACCCAGATCAACCAAGTGGTGAGTCATCCAAACCAGCCTCTCACCATC ACCGCCCACGACGACAGGGGCATCCGCTTCCTGGACAATCGGACAGGTAAGCCGGTGCAC TCCATGGTTGCACACCTGGACGCAGTCACCTGCCTAGCCGTGGACCCCAACGGCGCATTC CTGATGTCAGGAAGCCATGACTGCTCCCTGCGTCTCTGGAGCCTGGACAACAAAACGTGC GTGCAGGAGATCACGGCCCACCGCAAGAAGCACGAGGAGGCCATCCACGCTGTTGCCTGC CACCCCAGCAAGGCCCTCATTGCCAGTGCTGGCGCTGATGCCCTGGCCAAGGTCTTCGTA
Cloned ORF protein sequence for pF1KB3518 Download>KIBB3518 760 aa MMEERAAAAVAAAASSCRPLGSGAGPGPTGAAPVSAPAPGPGPAGKGGGGGGSPGPTAGP EPLSLPGILHFIQHEWARFEAEKARWEAERAELQAQVAFLQGERKGQENLKTDLVRRIKM LEYALKQERAKYHKLKFGTDLNQGEKKADVSEQVSNGPVESVTLENSPLVWKEGRQLLRQ YLEEVGYTDTILDMRSKRVRSLLGRSLELNGAVEPSEGAPRAPPGPAGLSGGESLLVKQI EEQIKRNAAGKDGKERLGGSVLGQIPFLQNCEDEDSDEDDELDSVQHKKQRVKLPSKALV PEMEDEDEEDDSEDAINEFDFLGSGEDGEGAPDPRRCTVDGSPHELESRRVKLQGILADL RDVDGLPPKVTGPPPGTPQPRPHEGSFGFSSDVFIMDTIGGGEVSLGDLADLTVTNDNDL SCDLSDSKDAFKKTWNPKFTLRSHYDGIRSLAFHHSQSALLTASEDGTLKLWNLQKAVTA KKNAALDVEPIHAFRAHRGPVLAVAMGSNSEYCYSGGADACIHSWKIPDLSMDPYDGYDP SVLSHVLEGHGDAVWGLAFSPTSQRLASCSADGTVRIWDPSSSSPACLCTFPTASEHGVP TSVAFTSTEPAHIVASFRSGDTVLYDMEVGSALLTLESRGSSGPTQINQVVSHPNQPLTI TAHDDRGIRFLDNRTGKPVHSMVAHLDAVTCLAVDPNGAFLMSGSHDCSLRLWSLDNKTC VQEITAHRKKHEEAIHAVACHPSKALIASAGADALAKVFV
Nucleotide Sequence (with vector) for pF1KB3518 Download>pF1KB3518 5393 bp GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGATGGAGGAG CGAGCGGCCGCCGCGGTCGCCGCCGCCGCCTCCTCCTGCCGTCCGCTCGGCTCAGGCGCG GGCCCTGGCCCCACTGGGGCGGCCCCGGTCTCCGCCCCTGCCCCCGGGCCGGGCCCGGCA GGTAAGGGAGGCGGCGGCGGAGGCAGCCCCGGGCCCACGGCGGGCCCGGAGCCCCTGAGC CTGCCGGGGATCCTGCACTTTATCCAGCACGAGTGGGCGCGCTTCGAAGCCGAGAAAGCC CGCTGGGAGGCCGAGCGCGCCGAGTTACAGGCTCAGGTGGCCTTCCTTCAGGGAGAGAGG AAAGGGCAGGAGAATCTAAAGACGGACCTGGTGCGGCGGATCAAGATGCTAGAGTATGCG CTGAAGCAGGAAAGGGCCAAATATCATAAACTGAAGTTTGGGACAGACCTGAACCAGGGG GAGAAGAAAGCAGATGTGTCAGAACAAGTCTCCAATGGCCCCGTGGAATCGGTCACCCTG GAGAACAGCCCGTTGGTGTGGAAGGAGGGGCGGCAGCTTCTCCGACAGTACCTGGAAGAG GTGGGCTACACAGACACCATCCTCGACATGCGGTCCAAGCGCGTCCGTTCCCTGCTGGGC CGCTCGCTGGAGCTCAACGGGGCAGTGGAGCCGAGTGAAGGGGCCCCCAGGGCTCCACCA GGCCCTGCAGGGCTCAGTGGTGGGGAGTCGCTGCTGGTGAAACAGATCGAGGAGCAGATA AAGAGGAACGCGGCAGGCAAAGATGGCAAAGAGCGCTTGGGCGGCTCAGTGCTGGGGCAG ATCCCCTTCCTGCAGAACTGCGAGGACGAAGACAGCGACGAGGACGATGAGCTGGACAGC GTGCAGCACAAGAAGCAGCGTGTGAAGCTCCCATCCAAGGCTCTGGTGCCCGAAATGGAA GACGAGGATGAGGAAGACGACTCTGAGGATGCTATCAATGAGTTTGATTTCCTGGGCTCA GGAGAGGATGGGGAAGGGGCTCCAGACCCTCGGCGGTGCACTGTGGATGGGAGCCCCCAT GAGCTGGAAAGCCGTCGGGTCAAACTCCAAGGCATTCTGGCTGACCTGCGGGATGTGGAT GGGCTGCCCCCAAAAGTGACTGGCCCGCCTCCTGGCACACCCCAGCCCCGGCCACATGAA GGTTCCTTTGGCTTCTCCTCAGACGTCTTCATCATGGACACTATCGGGGGCGGGGAGGTG AGCCTGGGGGACTTGGCAGATCTCACCGTCACCAACGACAACGACCTCAGCTGCGATCTG TCTGACAGCAAAGATGCTTTTAAGAAGACGTGGAACCCCAAGTTCACCCTGCGCTCGCAC TACGACGGCATTCGTTCCCTGGCCTTCCACCACAGCCAGTCGGCTCTGCTCACCGCCTCC GAGGACGGCACGCTCAAGCTCTGGAACCTGCAGAAGGCGGTCACGGCCAAGAAGAATGCG GCGCTAGATGTGGAACCTATACATGCTTTCCGGGCTCACAGGGGCCCAGTGTTGGCTGTG GCTATGGGCAGCAACAGTGAATACTGCTACAGTGGCGGGGCAGATGCCTGCATCCATAGT TGGAAGATTCCAGACCTCAGCATGGATCCCTATGATGGCTACGACCCAAGCGTGCTGAGC CACGTCCTGGAGGGCCACGGGGACGCCGTGTGGGGCCTGGCCTTCAGTCCCACCTCCCAG CGCCTGGCCTCCTGTTCTGCTGATGGCACCGTCCGCATCTGGGACCCCAGCAGCAGCAGC CCGGCCTGCCTCTGCACCTTCCCCACAGCCAGCGAGCACGGGGTCCCCACCTCAGTGGCC TTCACCAGCACCGAGCCTGCCCACATCGTGGCCTCCTTCCGCTCTGGCGACACCGTCTTG TATGACATGGAGGTTGGCAGTGCCCTCCTCACGCTGGAGTCCCGGGGCAGCAGCGGTCCA ACCCAGATCAACCAAGTGGTGAGTCATCCAAACCAGCCTCTCACCATCACCGCCCACGAC GACAGGGGCATCCGCTTCCTGGACAATCGGACAGGTAAGCCGGTGCACTCCATGGTTGCA CACCTGGACGCAGTCACCTGCCTAGCCGTGGACCCCAACGGCGCATTCCTGATGTCAGGA AGCCATGACTGCTCCCTGCGTCTCTGGAGCCTGGACAACAAAACGTGCGTGCAGGAGATC ACGGCCCACCGCAAGAAGCACGAGGAGGCCATCCACGCTGTTGCCTGCCACCCCAGCAAG GCCCTCATTGCCAGTGCTGGCGCTGATGCCCTGGCCAAGGTCTTCGTAGTTTAAACGAAT TCGAGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGC TGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGC ATAACCCCTTGGGGCCTCTAAACGGGTCTTGAGGGGTTTTTTGCTGAAAGGAGGAACTAT ATCCGGTTCGCTTGCTGTCCATAAAACCGCCCAGTCTAGCTATCGCCATGTAAGCCCACT GCAAGCTACCTGCTTTCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCT GACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTACGTGTTCCGCTTCCT TTAGCAGCCCTTGCGCCCTGAGTGCTTGCGGCAGCGTGAGCTTCAAAAGAATTGCCAGCT GGGGCGCCCTCTGGTAAGGTTGGGAAGCCCTGCAAAGTAAACTGGATGGCTTTCTTGCCG CCAAGGATCTGATGGCGCAGGGGATCAAGATCTGATCAAGAGACAGGATGACGGTCGTTT CGCATGCTTGAACAAGATGGATTGCACGCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTA TTCGGCTATGACTGGGCACAACAGACAATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTG TCAGCGCAGGGGCGCCCGGTTCTTTTTGTCAAGACCGACCTGTCCGGTGCCCTGAATGAA CTGCAGGACGAGGCAGCGCGGCTATCGTGGCTGGCCACGACGGGCGTTCCTTGCGCAGCT GTGCTCGACGTTGTCACTGAAGCGGGAAGGGACTGGCTGCTATTGGGCGAAGTGCCGGGG CAGGATCTCCTGTCATCTCACCTTGCTCCTGCCGAGAAAGTATCCATCATGGCTGATGCA ATGCGGCGGCTGCATACGCTTGATCCGGCTACCTGCCCATTCGACCACCAAGCGAAACAT CGCATCGAGCGAGCACGCACTCGGATGGAAGCCGGTCTTGTCGATCAGGATGATCTGGAC GAAGAGCATCAGGGGCTCGCGCCAGCCGAACTGTTCGCCAGGCTCAAGGCGCGTATGCCG GATGGTGAGGATCTCGTCGTGACTCATGGCGATGCCTGCTTGCCGAATATCATGGTGGAA AATGGCCGCTTTTCTGGATTCATCGACTGTGGCCGGCTGGGTGTGGCGGACCGCTATCAG GACATAGCGTTGGCTACCCGTGATATTGCTGAAGAGCTTGGCGGCGAATGGGCTGACCGC TTCCTCGTGCTTTACGGTATCGCCGCTCCCGATTCGCAGCGCATCGCCTTCTATCGCCTT CTTGACGAGTTCTTCTGAGCGGGACTCTGGGGTTCGAAATGACCGACCAAGCGACGCCCA ACCGGACTATAAAAGGATCTAGGTGAAGATCCTTTTTGATAATCTCATGACCAAAATCCC TTAACGTGAGTTTTCGTTCCACTGAGCGTCAGACCCCGTAGAAAAGATCAAAGGATCTTC TTGAAATCCTTTTTTTCTGCGCGTAATCTGCTGCTTGCAAACAAAAAAACCACCGCTACC AGCGGTGGTTTGTTTGCCGGATCAAGAGCTACCAACTCTTTTTCCGAAGGTAACTGGCTT CAGCAGAGCGCAGATACCAAATACTGTCCTTCTAGTGTAGCCGTAGTTAGGCCACCACTT CAAGAACTCTGTAGCACCGCCTACATACCTCGCTCTGCTAATCCTGTTACCAGTGGCTGC TGCCAGTGGCGATAAGTCGTGTCTTACCGGGTTGGACTCAAGACGATAGTTACCGGATAA GGCGCAGCGGTCGGGCTGAACGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGAC CTACACCGAACTGAGATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGG GAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGA GCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACT TGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAA CGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGC GTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGATACCGGAAA TACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGC TTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTGCATAGGTATTCATAC GGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTAC CTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTACAATTAAGGGATTAT GGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCA CGATGCGTCCGGCGTAGAGGATCGAGATCTTTTCAGCCTGATACAGATTAAATCAGAACG CAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGA CCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCA TGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGG CCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGG GAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCAT AAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTC TACAAACTCTTTTGTTTATTTTTCTAAATACATTCAAATATGTATCCGCTCAT
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