OR4A13P ORF clone FXC11294

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Flexi ORF Clone FXC11294

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Clone info.

Species

human

Clone Name

pF1KE0827 Sequence (with vector) Restriction Map

Product ID

FXC11294

HaloTag Clone PID

FHC11294

ORF Sequence

DNA sequence (660 bp)
Protein sequence (220 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pF1K Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB529256]

Gene

KIEE0827

Symbol

OR4A13P

Description

olfactory receptor, family 4, subfamily A, member 13 pseudogene

Original Clone ID

cp01227

Features of the cloned ORF sequence

Description

Length: 660 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 220 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS73289.1 3.2e-60 80.5 OR4A5 CCDS31499.1 7.8e-58 76.0 OR4A16 CCDS31490.1 7.8e-55 71.3 OR4A47 CCDS31500.1 4.3e-50 63.5 OR4A15 CCDS73288.1 4.7e-47 62.0 OR4C46 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition FPrintScan IPR000725 32 44 PR00245 Olfactory receptor IPR000725 79 95 PR00245 Olfactory receptor IPR000725 138 147 PR00245 Olfactory receptor IPR000725 183 194 PR00245 Olfactory receptor HMMPfam IPR000276 5 190 PF00001 GPCR ProfileScan IPR017452 1 190 PS50262 GPCR
Prediction of transmembrane (TM) segments Method No. N terminal transmembrane region C terminal type length SOSUI2 1 6 TDHLFGGTEIFLLVVMAYDRYVA 28 SECONDARY 23 2 47 LLVVAMTGGFLHSVFQIVVLYSL 69 PRIMARY 23 3 109 MCMVIFALLLISYGVSLNSLKTY 131 PRIMARY 23 4 142 TCSSHITVVVLFFVPCIFMYVRP 164 PRIMARY 23 5 170 IDKFVTVFYTVITPMLNPFLYTL 192 SECONDARY 23 6 198 INAIKHLLCKKLTIVRIRVSLLM 220 SECONDARY 23
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_001004703 309 614273 62.0 94.5 NP_001005487 307 611677 43.3 93.2 NP_001004729 311 615702 44.6 93.6 NP_835462 317 608493 42.9 95.0 NP_001005216 311 615016,615082 40.4 93.2 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pF1KE0827 Download

>KIEE0827  660 bp
ATGGGCCAGCTATTTACAGACCACTTGTTTGGTGGAACTGAGATCTTCCTTCTGGTGGTG
ATGGCCTATGATCGCTACGTGGCCATCTGTAAGCCACTGCACTATTTAACCATCATGAAT
CGACAGGTTTCCATCCTTCTGTTGGTGGTGGCCATGACTGGAGGTTTCCTTCATTCTGTG
TTTCAAATTGTTGTTCTGTACAGTCTTCCTTTCTGTGGCCCCAATGTCATTGACCACTTT
TTCTGTGACATGTACCCATTATTGGAACTGGCGTGCACTGACACCTACTTTATAGGCCTC
GCTGTAGTTTTCAGTGGTGGAGCAATGTGTATGGTCATCTTCGCCCTTCTACTAATCTCC
TATGGAGTCAGCCTAAACTCCCTTAAAACTTATAGTCAGGAAGGGAGGCGTAAAGCCCTG
TCTACCTGCAGCTCGCACATCACCGTGGTTGTCCTCTTTTTTGTTCCCTGTATTTTCATG
TATGTTAGACCTGTCTCAAACTTCCCTATTGATAAATTCGTTACTGTGTTTTATACAGTT
ATCACACCCATGCTGAATCCTTTTTTATACACGTTGAGAAATTCAGAGATGATAAATGCT
ATAAAACACCTGTTGTGTAAGAAGCTAACTATAGTTAGAATAAGAGTGTCCCTCCTCATG

ORF Protein

Cloned ORF protein sequence for pF1KE0827 Download

>KIEE0827  220 aa
MGQLFTDHLFGGTEIFLLVVMAYDRYVAICKPLHYLTIMNRQVSILLLVVAMTGGFLHSV
FQIVVLYSLPFCGPNVIDHFFCDMYPLLELACTDTYFIGLAVVFSGGAMCMVIFALLLIS
YGVSLNSLKTYSQEGRRKALSTCSSHITVVVLFFVPCIFMYVRPVSNFPIDKFVTVFYTV
ITPMLNPFLYTLRNSEMINAIKHLLCKKLTIVRIRVSLLM

ORF+Vector

Nucleotide Sequence (with vector) for pF1KE0827 Download

>pF1KE0827  3773 bp
GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA
TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGGGCCAGCTA
TTTACAGACCACTTGTTTGGTGGAACTGAGATCTTCCTTCTGGTGGTGATGGCCTATGAT
CGCTACGTGGCCATCTGTAAGCCACTGCACTATTTAACCATCATGAATCGACAGGTTTCC
ATCCTTCTGTTGGTGGTGGCCATGACTGGAGGTTTCCTTCATTCTGTGTTTCAAATTGTT
GTTCTGTACAGTCTTCCTTTCTGTGGCCCCAATGTCATTGACCACTTTTTCTGTGACATG
TACCCATTATTGGAACTGGCGTGCACTGACACCTACTTTATAGGCCTCGCTGTAGTTTTC
AGTGGTGGAGCAATGTGTATGGTCATCTTCGCCCTTCTACTAATCTCCTATGGAGTCAGC
CTAAACTCCCTTAAAACTTATAGTCAGGAAGGGAGGCGTAAAGCCCTGTCTACCTGCAGC
TCGCACATCACCGTGGTTGTCCTCTTTTTTGTTCCCTGTATTTTCATGTATGTTAGACCT
GTCTCAAACTTCCCTATTGATAAATTCGTTACTGTGTTTTATACAGTTATCACACCCATG
CTGAATCCTTTTTTATACACGTTGAGAAATTCAGAGATGATAAATGCTATAAAACACCTG
TTGTGTAAGAAGCTAACTATAGTTAGAATAAGAGTGTCCCTCCTCATGGTTTAAACGAAT
TCGAGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGC
TGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGC
ATAACCCCTTGGGGCCTCTAAACGGGTCTTGAGGGGTTTTTTGCTGAAAGGAGGAACTAT
ATCCGGTTCGCTTGCTGTCCATAAAACCGCCCAGTCTAGCTATCGCCATGTAAGCCCACT
GCAAGCTACCTGCTTTCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCT
GACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTACGTGTTCCGCTTCCT
TTAGCAGCCCTTGCGCCCTGAGTGCTTGCGGCAGCGTGAGCTTCAAAAGAATTGCCAGCT
GGGGCGCCCTCTGGTAAGGTTGGGAAGCCCTGCAAAGTAAACTGGATGGCTTTCTTGCCG
CCAAGGATCTGATGGCGCAGGGGATCAAGATCTGATCAAGAGACAGGATGACGGTCGTTT
CGCATGCTTGAACAAGATGGATTGCACGCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTA
TTCGGCTATGACTGGGCACAACAGACAATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTG
TCAGCGCAGGGGCGCCCGGTTCTTTTTGTCAAGACCGACCTGTCCGGTGCCCTGAATGAA
CTGCAGGACGAGGCAGCGCGGCTATCGTGGCTGGCCACGACGGGCGTTCCTTGCGCAGCT
GTGCTCGACGTTGTCACTGAAGCGGGAAGGGACTGGCTGCTATTGGGCGAAGTGCCGGGG
CAGGATCTCCTGTCATCTCACCTTGCTCCTGCCGAGAAAGTATCCATCATGGCTGATGCA
ATGCGGCGGCTGCATACGCTTGATCCGGCTACCTGCCCATTCGACCACCAAGCGAAACAT
CGCATCGAGCGAGCACGCACTCGGATGGAAGCCGGTCTTGTCGATCAGGATGATCTGGAC
GAAGAGCATCAGGGGCTCGCGCCAGCCGAACTGTTCGCCAGGCTCAAGGCGCGTATGCCG
GATGGTGAGGATCTCGTCGTGACTCATGGCGATGCCTGCTTGCCGAATATCATGGTGGAA
AATGGCCGCTTTTCTGGATTCATCGACTGTGGCCGGCTGGGTGTGGCGGACCGCTATCAG
GACATAGCGTTGGCTACCCGTGATATTGCTGAAGAGCTTGGCGGCGAATGGGCTGACCGC
TTCCTCGTGCTTTACGGTATCGCCGCTCCCGATTCGCAGCGCATCGCCTTCTATCGCCTT
CTTGACGAGTTCTTCTGAGCGGGACTCTGGGGTTCGAAATGACCGACCAAGCGACGCCCA
ACCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGC
AGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCGTAAAAAGGCCGCGTT
GCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAAAAATCGACGCTCAAG
TCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGCGTTTCCCCCTGGAAGCTC
CCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCTGTCCGCCTTTCTCCC
TTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTATCTCAGTTCGGTGTAGGT
CGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCCCGACCGCTGCGCCTT
ATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGACTTATCGCCACTGGCAGC
AGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGGTGCTACAGAGTTCTTGAA
GTGGTGGCCTAACTACGGCTACACTAGAAGGACAGTATTTGGTATCTGCGCTCTGCTGAA
GCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAACAAACCACCGCTGG
TAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAAAAAAGGATTTCAAGA
AGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGAACGAAAACTCACGTTAAGG
GATTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTAGATCCTTTTATAGTCCGGAAA
TACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGC
TTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTGCATAGGTATTCATAC
GGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTAC
CTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTACAATTAAGGGATTAT
GGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCA
CGATGCGTCCGGCGTAGAGGATCGAGATCTTTTCAGCCTGATACAGATTAAATCAGAACG
CAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGA
CCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCA
TGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGG
CCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGG
GAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCAT
AAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTC
TACAAACTCTTTTGTTTATTTTTCTAAATACATTCAAATATGTATCCGCTCAT