HMG20A ORF clone FXC02213

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Flexi ORF Clone FXC02213

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Clone info.

Species

human

Clone Name

pF1KB5656 Sequence (with vector) Restriction Map

Product ID

FXC02213

HaloTag Clone PID

FHC02213

ORF Sequence

DNA sequence (1041 bp)
Protein sequence (347 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pF1K Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB463731]

Gene

KIBB5656

Symbol

HMG20A

Alias : HMGX1, HMGXB1

Description

high mobility group 20A, transcript variant 1

Original Clone ID

ej00714

Features of the cloned ORF sequence

Description

Length: 1041 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 347 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS10295.1 5.6e-82 100.0 HMG20A CCDS45919.1 8.5e-33 48.4 HMG20B The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition HMMPfam IPR000910 103 171 PF00505 High mobility group HMMSmart IPR000910 102 172 SM00398 High mobility group ProfileScan IPR000910 103 171 PS50118 High mobility group
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_001291433 347 605534 100.0 100.0 NP_060670 347 605534 100.0 100.0 XP_011519460 347 605534 100.0 100.0 NP_006330 317 605535 48.4 90.8 XP_016881633 316 605535 48.8 90.8 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pF1KB5656 Download

>KIBB5656  1041 bp
ATGGAAAACTTGATGACTAGCTCCACCCTACCGCCCCTTTTTGCAGATGAAGACGGTTCC
AAGGAGAGTAATGATCTGGCTACCACTGGGTTAAATCACCCAGAGGTTCCATACAGTAGT
GGCGCCACATCATCCACCAACAATCCAGAATTTGTGGAGGATCTCTCTCAAGGTCAGTTG
CTTCAGAGTGAGTCTTCAAATGCAGCAGAAGGCAATGAACAGAGGCATGAAGATGAGCAA
CGAAGTAAACGAGGAGGTTGGTCCAAAGGAAGAAAGAGGAAGAAACCTCTTCGAGACAGC
AATGCACCCAAATCCCCCCTTACAGGATATGTTCGGTTCATGAATGAGCGTCGAGAACAA
CTTCGAGCAAAGAGACCAGAAGTCCCATTTCCAGAAATCACAAGGATGTTAGGCAATGAA
TGGAGTAAACTGCCTCCTGAGGAAAAACAGCGCTACCTTGATGAAGCAGACAGAGATAAG
GAGCGTTACATGAAGGAACTGGAACAGTATCAGAAAACAGAGGCCTACAAGGTCTTCAGT
AGGAAAACCCAGGACCGTCAGAAAGGCAAATCTCATAGGCAAGATGCAGCCCGGCAGGCC
ACTCATGATCATGAGAAAGAAACAGAGGTAAAGGAACGGTCTGTTTTTGACATCCCTATA
TTTACAGAGGAATTCTTGAACCATAGCAAAGCTCGGGAAGCAGAGCTCCGCCAGCTTCGC
AAATCCAACATGGAGTTTGAGGAGAGGAATGCAGCCCTGCAAAAGCACGTGGAGAGCATG
CGCACAGCAGTGGAGAAGCTGGAGGTGGATGTGATCCAGGAGCGGAGCCGCAACACAGTC
TTACAGCAGCACCTGGAGACCCTGCGGCAGGTGCTGACCAGCAGCTTTGCCAGCATGCCC
TTGCCTGGAAGTGGAGAGACACCTACAGTGGACACCATTGACTCATATATGAACAGACTG
CACAGTATTATTTTAGCTAATCCCCAAGACAATGAAAACTTCATAGCTACAGTTCGAGAA
GTTGTGAACAGACTCGATCGT

ORF Protein

Cloned ORF protein sequence for pF1KB5656 Download

>KIBB5656  347 aa
MENLMTSSTLPPLFADEDGSKESNDLATTGLNHPEVPYSSGATSSTNNPEFVEDLSQGQL
LQSESSNAAEGNEQRHEDEQRSKRGGWSKGRKRKKPLRDSNAPKSPLTGYVRFMNERREQ
LRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQKTEAYKVFS
RKTQDRQKGKSHRQDAARQATHDHEKETEVKERSVFDIPIFTEEFLNHSKAREAELRQLR
KSNMEFEERNAALQKHVESMRTAVEKLEVDVIQERSRNTVLQQHLETLRQVLTSSFASMP
LPGSGETPTVDTIDSYMNRLHSIILANPQDNENFIATVREVVNRLDR

ORF+Vector

Nucleotide Sequence (with vector) for pF1KB5656 Download

>pF1KB5656  4154 bp
GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA
TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGGAAAACTTG
ATGACTAGCTCCACCCTACCGCCCCTTTTTGCAGATGAAGACGGTTCCAAGGAGAGTAAT
GATCTGGCTACCACTGGGTTAAATCACCCAGAGGTTCCATACAGTAGTGGCGCCACATCA
TCCACCAACAATCCAGAATTTGTGGAGGATCTCTCTCAAGGTCAGTTGCTTCAGAGTGAG
TCTTCAAATGCAGCAGAAGGCAATGAACAGAGGCATGAAGATGAGCAACGAAGTAAACGA
GGAGGTTGGTCCAAAGGAAGAAAGAGGAAGAAACCTCTTCGAGACAGCAATGCACCCAAA
TCCCCCCTTACAGGATATGTTCGGTTCATGAATGAGCGTCGAGAACAACTTCGAGCAAAG
AGACCAGAAGTCCCATTTCCAGAAATCACAAGGATGTTAGGCAATGAATGGAGTAAACTG
CCTCCTGAGGAAAAACAGCGCTACCTTGATGAAGCAGACAGAGATAAGGAGCGTTACATG
AAGGAACTGGAACAGTATCAGAAAACAGAGGCCTACAAGGTCTTCAGTAGGAAAACCCAG
GACCGTCAGAAAGGCAAATCTCATAGGCAAGATGCAGCCCGGCAGGCCACTCATGATCAT
GAGAAAGAAACAGAGGTAAAGGAACGGTCTGTTTTTGACATCCCTATATTTACAGAGGAA
TTCTTGAACCATAGCAAAGCTCGGGAAGCAGAGCTCCGCCAGCTTCGCAAATCCAACATG
GAGTTTGAGGAGAGGAATGCAGCCCTGCAAAAGCACGTGGAGAGCATGCGCACAGCAGTG
GAGAAGCTGGAGGTGGATGTGATCCAGGAGCGGAGCCGCAACACAGTCTTACAGCAGCAC
CTGGAGACCCTGCGGCAGGTGCTGACCAGCAGCTTTGCCAGCATGCCCTTGCCTGGAAGT
GGAGAGACACCTACAGTGGACACCATTGACTCATATATGAACAGACTGCACAGTATTATT
TTAGCTAATCCCCAAGACAATGAAAACTTCATAGCTACAGTTCGAGAAGTTGTGAACAGA
CTCGATCGTGTTTAAACGAATTCGAGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGC
AGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGC
CACCGCTGAGCAATAACTAGCATAACCCCTTGGGGCCTCTAAACGGGTCTTGAGGGGTTT
TTTGCTGAAAGGAGGAACTATATCCGGTTCGCTTGCTGTCCATAAAACCGCCCAGTCTAG
CTATCGCCATGTAAGCCCACTGCAAGCTACCTGCTTTCTCTTTGCGCTTGCGTTTTCCCT
TGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGC
TTTCTACGTGTTCCGCTTCCTTTAGCAGCCCTTGCGCCCTGAGTGCTTGCGGCAGCGTGA
GCTTCAAAAGAATTGCCAGCTGGGGCGCCCTCTGGTAAGGTTGGGAAGCCCTGCAAAGTA
AACTGGATGGCTTTCTTGCCGCCAAGGATCTGATGGCGCAGGGGATCAAGATCTGATCAA
GAGACAGGATGACGGTCGTTTCGCATGCTTGAACAAGATGGATTGCACGCAGGTTCTCCG
GCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAACAGACAATCGGCTGCTCT
GATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTTTGTCAAGACCGAC
CTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGGCTATCGTGGCTGGCCACG
ACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAGCGGGAAGGGACTGGCTG
CTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCACCTTGCTCCTGCCGAGAAA
GTATCCATCATGGCTGATGCAATGCGGCGGCTGCATACGCTTGATCCGGCTACCTGCCCA
TTCGACCACCAAGCGAAACATCGCATCGAGCGAGCACGCACTCGGATGGAAGCCGGTCTT
GTCGATCAGGATGATCTGGACGAAGAGCATCAGGGGCTCGCGCCAGCCGAACTGTTCGCC
AGGCTCAAGGCGCGTATGCCGGATGGTGAGGATCTCGTCGTGACTCATGGCGATGCCTGC
TTGCCGAATATCATGGTGGAAAATGGCCGCTTTTCTGGATTCATCGACTGTGGCCGGCTG
GGTGTGGCGGACCGCTATCAGGACATAGCGTTGGCTACCCGTGATATTGCTGAAGAGCTT
GGCGGCGAATGGGCTGACCGCTTCCTCGTGCTTTACGGTATCGCCGCTCCCGATTCGCAG
CGCATCGCCTTCTATCGCCTTCTTGACGAGTTCTTCTGAGCGGGACTCTGGGGTTCGAAA
TGACCGACCAAGCGACGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATC
CACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAG
GAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCA
TCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCA
GGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGG
ATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAG
GTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGT
TCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACA
CGACTTATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGG
CGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGACAGTATT
TGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATC
CGGCAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCG
CAGAAAAAAAGGATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTG
GAACGAAAACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTA
GATCCTTTTATAGTCCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGT
GAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTC
TGGTTGCATAGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGG
GTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGG
TGCGTACAATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGA
TAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCTTTTCAGCCT
GATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAG
TAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGA
TGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAA
AGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCC
TGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGT
GGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGA
CGGATGGCCTTTTTGCGTTTCTACAAACTCTTTTGTTTATTTTTCTAAATACATTCAAAT
ATGTATCCGCTCAT