SPG20 ORF clone FXC00108

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Flexi ORF Clone FXC00108

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Clone info.

Species

human

Clone Name

pF1KA0610 Sequence (with vector) Restriction Map

Product ID

FXC00108

HaloTag Clone PID

FHC00108

ORF Sequence

DNA sequence (1998 bp)
Protein sequence (666 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pF1K Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB385362]

Gene

KIAA0610

Symbol

SPG20

Description

spastic paraplegia 20 (Troyer syndrome), transcript variant 1

Original Clone ID

hh01733b

Features of the cloned ORF sequence

Description

Length: 1998 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 666 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS9356.1 6e-203 100.0 SPG20 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition HMMPfam IPR007330 20 95 PF04212 MIT IPR009686 415 615 PF06911 Senescence/spartin-associated HMMSmart IPR007330 16 94 SM00745 MIT
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) XP_005266374 666 275900,607111 100.0 100.0 XP_011533314 666 275900,607111 100.0 100.0 NP_001135766 666 275900,607111 100.0 100.0 NP_055902 666 275900,607111 100.0 100.0 XP_005266372 666 275900,607111 100.0 100.0 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pF1KA0610 Download

>KIAA0610  1998 bp
ATGGAGCAAGAGCCACAAAATGGAGAACCTGCTGAAATTAAGATCATCAGAGAAGCATAT
AAGAAGGCCTTTTTATTTGTTAACAAAGGTCTGAATACAGATGAATTAGGTCAGAAGGAA
GAAGCAAAGAACTACTATAAGCAAGGAATAGGACACCTGCTCAGAGGGATCAGCATTTCA
TCAAAAGAGTCTGAACACACAGGTCCTGGGTGGGAATCTGCTAGACAGATGCAACAGAAA
ATGAAAGAAACTCTACAGAATGTACGCACCAGGCTGGAAATTCTAGAGAAGGGTCTTGCC
ACTTCTCTGCAGAATGATCTTCAGGAGGTGCCCAAGTTATATCCAGAATTTCCACCTAAA
GACATGTGTGAAAAATTACCAGAGCCTCAGTCTTTTAGTTCAGCTCCTCAGCATGCTGAA
GTAAATGGAAACACCTCAACTCCAAGTGCAGGGGCAGTTGCTGCACCTGCTTCTCTGTCT
TTACCATCACAAAGTTGTCCAGCAGAAGCTCCTCCTGCTTATACTCCTCAAGCTGCTGAA
GGTCACTACACTGTATCCTATGGAACAGATTCTGGGGAGTTTTCATCAGTTGGAGAGGAG
TTTTATAGGAATCATTCTCAGCCACCGCCTCTTGAGACCTTAGGGCTGGATGCAGATGAA
TTGATTTTGATACCAAATGGAGTACAGATTTTTTTTGTAAATCCTGCAGGGGAGGTTAGT
GCACCTTCGTATCCTGGGTACCTTCGAATTGTGAGGTTTTTGGATAATTCTCTCGATACG
GTTCTAAACCGTCCTCCCGGGTTTCTTCAGGTTTGTGACTGGTTATATCCTCTAGTTCCT
GATAGATCTCCGGTTCTGAAATGTACTGCGGGAGCCTACATGTTTCCTGATACAATGCTA
CAAGCAGCAGGATGCTTTGTGGGGGTCGTCCTGTCCTCTGAGTTACCAGAGGATGATAGA
GAGCTCTTTGAGGATCTGTTAAGGCAAATGTCTGACCTTCGGCTCCAGGCCAACTGGAAC
AGAGCAGAAGAAGAAAATGAATTCCAAATCCCTGGAAGAACTAGACCCTCCTCTGACCAA
CTAAAAGAAGCCTCTGGCACTGATGTGAAACAGTTGGACCAAGGCAATAAGGATGTACGT
CATAAAGGAAAACGTGGAAAAAGGGCTAAAGATACTTCAAGTGAAGAAGTTAACCTGAGT
CACATTGTACCATGTGAGCCAGTTCCAGAAGAAAAGCCAAAAGAATTACCTGAATGGAGT
GAAAAAGTGGCTCACAACATTTTGTCAGGTGCTTCCTGGGTGAGTTGGGGTTTAGTCAAA
GGTGCTGAGATTACTGGTAAGGCAATCCAGAAAGGTGCTTCTAAACTCCGAGAGCGGATT
CAACCAGAAGAAAAACCCGTGGAAGTTAGTCCAGCTGTCACCAAGGGACTTTATATAGCG
AAGCAAGCTACAGGAGGAGCAGCAAAAGTCAGTCAGTTCCTGGTTGATGGAGTTTGCACT
GTAGCAAATTGCGTTGGAAAAGAACTAGCTCCACATGTCAAGAAGCATGGAAGCAAACTT
GTTCCAGAATCTCTTAAAAAAGACAAAGATGGGAAATCTCCTCTGGATGGTGCTATGGTT
GTAGCAGCAAGTAGTGTTCAAGGATTTTCAACTGTCTGGCAAGGATTGGAATGTGCAGCT
AAATGCATCGTTAACAATGTTTCAGCAGAAACTGTACAAACTGTCAGATACAAATACGGA
TATAATGCAGGAGAAGCTACCCACCATGCGGTGGATTCTGCGGTCAATGTTGGCGTAACT
GCCTACAATATTAACAACATTGGTATCAAAGCAATGGTGAAGAAAACTGCAACACAAACA
GGACACACTCTCCTTGAGGACTATCAGATAGTTGATAATTCTCAGAGGGAAAATCAAGAA
GGAGCAGCAAATGTCAACGTGAGAGGGGAGAAGGATGAGCAGACGAAGGAAGTAAAGGAG
GCAAAGAAGAAAGATAAA

ORF Protein

Cloned ORF protein sequence for pF1KA0610 Download

>KIAA0610  666 aa
MEQEPQNGEPAEIKIIREAYKKAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGISIS
SKESEHTGPGWESARQMQQKMKETLQNVRTRLEILEKGLATSLQNDLQEVPKLYPEFPPK
DMCEKLPEPQSFSSAPQHAEVNGNTSTPSAGAVAAPASLSLPSQSCPAEAPPAYTPQAAE
GHYTVSYGTDSGEFSSVGEEFYRNHSQPPPLETLGLDADELILIPNGVQIFFVNPAGEVS
APSYPGYLRIVRFLDNSLDTVLNRPPGFLQVCDWLYPLVPDRSPVLKCTAGAYMFPDTML
QAAGCFVGVVLSSELPEDDRELFEDLLRQMSDLRLQANWNRAEEENEFQIPGRTRPSSDQ
LKEASGTDVKQLDQGNKDVRHKGKRGKRAKDTSSEEVNLSHIVPCEPVPEEKPKELPEWS
EKVAHNILSGASWVSWGLVKGAEITGKAIQKGASKLRERIQPEEKPVEVSPAVTKGLYIA
KQATGGAAKVSQFLVDGVCTVANCVGKELAPHVKKHGSKLVPESLKKDKDGKSPLDGAMV
VAASSVQGFSTVWQGLECAAKCIVNNVSAETVQTVRYKYGYNAGEATHHAVDSAVNVGVT
AYNINNIGIKAMVKKTATQTGHTLLEDYQIVDNSQRENQEGAANVNVRGEKDEQTKEVKE
AKKKDK

ORF+Vector

Nucleotide Sequence (with vector) for pF1KA0610 Download

>pF1KA0610  5111 bp
GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA
TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGGAGCAAGAG
CCACAAAATGGAGAACCTGCTGAAATTAAGATCATCAGAGAAGCATATAAGAAGGCCTTT
TTATTTGTTAACAAAGGTCTGAATACAGATGAATTAGGTCAGAAGGAAGAAGCAAAGAAC
TACTATAAGCAAGGAATAGGACACCTGCTCAGAGGGATCAGCATTTCATCAAAAGAGTCT
GAACACACAGGTCCTGGGTGGGAATCTGCTAGACAGATGCAACAGAAAATGAAAGAAACT
CTACAGAATGTACGCACCAGGCTGGAAATTCTAGAGAAGGGTCTTGCCACTTCTCTGCAG
AATGATCTTCAGGAGGTGCCCAAGTTATATCCAGAATTTCCACCTAAAGACATGTGTGAA
AAATTACCAGAGCCTCAGTCTTTTAGTTCAGCTCCTCAGCATGCTGAAGTAAATGGAAAC
ACCTCAACTCCAAGTGCAGGGGCAGTTGCTGCACCTGCTTCTCTGTCTTTACCATCACAA
AGTTGTCCAGCAGAAGCTCCTCCTGCTTATACTCCTCAAGCTGCTGAAGGTCACTACACT
GTATCCTATGGAACAGATTCTGGGGAGTTTTCATCAGTTGGAGAGGAGTTTTATAGGAAT
CATTCTCAGCCACCGCCTCTTGAGACCTTAGGGCTGGATGCAGATGAATTGATTTTGATA
CCAAATGGAGTACAGATTTTTTTTGTAAATCCTGCAGGGGAGGTTAGTGCACCTTCGTAT
CCTGGGTACCTTCGAATTGTGAGGTTTTTGGATAATTCTCTCGATACGGTTCTAAACCGT
CCTCCCGGGTTTCTTCAGGTTTGTGACTGGTTATATCCTCTAGTTCCTGATAGATCTCCG
GTTCTGAAATGTACTGCGGGAGCCTACATGTTTCCTGATACAATGCTACAAGCAGCAGGA
TGCTTTGTGGGGGTCGTCCTGTCCTCTGAGTTACCAGAGGATGATAGAGAGCTCTTTGAG
GATCTGTTAAGGCAAATGTCTGACCTTCGGCTCCAGGCCAACTGGAACAGAGCAGAAGAA
GAAAATGAATTCCAAATCCCTGGAAGAACTAGACCCTCCTCTGACCAACTAAAAGAAGCC
TCTGGCACTGATGTGAAACAGTTGGACCAAGGCAATAAGGATGTACGTCATAAAGGAAAA
CGTGGAAAAAGGGCTAAAGATACTTCAAGTGAAGAAGTTAACCTGAGTCACATTGTACCA
TGTGAGCCAGTTCCAGAAGAAAAGCCAAAAGAATTACCTGAATGGAGTGAAAAAGTGGCT
CACAACATTTTGTCAGGTGCTTCCTGGGTGAGTTGGGGTTTAGTCAAAGGTGCTGAGATT
ACTGGTAAGGCAATCCAGAAAGGTGCTTCTAAACTCCGAGAGCGGATTCAACCAGAAGAA
AAACCCGTGGAAGTTAGTCCAGCTGTCACCAAGGGACTTTATATAGCGAAGCAAGCTACA
GGAGGAGCAGCAAAAGTCAGTCAGTTCCTGGTTGATGGAGTTTGCACTGTAGCAAATTGC
GTTGGAAAAGAACTAGCTCCACATGTCAAGAAGCATGGAAGCAAACTTGTTCCAGAATCT
CTTAAAAAAGACAAAGATGGGAAATCTCCTCTGGATGGTGCTATGGTTGTAGCAGCAAGT
AGTGTTCAAGGATTTTCAACTGTCTGGCAAGGATTGGAATGTGCAGCTAAATGCATCGTT
AACAATGTTTCAGCAGAAACTGTACAAACTGTCAGATACAAATACGGATATAATGCAGGA
GAAGCTACCCACCATGCGGTGGATTCTGCGGTCAATGTTGGCGTAACTGCCTACAATATT
AACAACATTGGTATCAAAGCAATGGTGAAGAAAACTGCAACACAAACAGGACACACTCTC
CTTGAGGACTATCAGATAGTTGATAATTCTCAGAGGGAAAATCAAGAAGGAGCAGCAAAT
GTCAACGTGAGAGGGGAGAAGGATGAGCAGACGAAGGAAGTAAAGGAGGCAAAGAAGAAA
GATAAAGTTTAAACGAATTCGAGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGG
CATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCAC
CGCTGAGCAATAACTAGCATAACCCCTTGGGGCCTCTAAACGGGTCTTGAGGGGTTTTTT
GCTGAAAGGAGGAACTATATCCGGTTCGCTTGCTGTCCATAAAACCGCCCAGTCTAGCTA
TCGCCATGTAAGCCCACTGCAAGCTACCTGCTTTCTCTTTGCGCTTGCGTTTTCCCTTGT
CCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTT
CTACGTGTTCCGCTTCCTTTAGCAGCCCTTGCGCCCTGAGTGCTTGCGGCAGCGTGAGCT
TCAAAAGAATTGCCAGCTGGGGCGCCCTCTGGTAAGGTTGGGAAGCCCTGCAAAGTAAAC
TGGATGGCTTTCTTGCCGCCAAGGATCTGATGGCGCAGGGGATCAAGATCTGATCAAGAG
ACAGGATGACGGTCGTTTCGCATGCTTGAACAAGATGGATTGCACGCAGGTTCTCCGGCC
GCTTGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAACAGACAATCGGCTGCTCTGAT
GCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTTTGTCAAGACCGACCTG
TCCGGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGGCTATCGTGGCTGGCCACGACG
GGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAGCGGGAAGGGACTGGCTGCTA
TTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCACCTTGCTCCTGCCGAGAAAGTA
TCCATCATGGCTGATGCAATGCGGCGGCTGCATACGCTTGATCCGGCTACCTGCCCATTC
GACCACCAAGCGAAACATCGCATCGAGCGAGCACGCACTCGGATGGAAGCCGGTCTTGTC
GATCAGGATGATCTGGACGAAGAGCATCAGGGGCTCGCGCCAGCCGAACTGTTCGCCAGG
CTCAAGGCGCGTATGCCGGATGGTGAGGATCTCGTCGTGACTCATGGCGATGCCTGCTTG
CCGAATATCATGGTGGAAAATGGCCGCTTTTCTGGATTCATCGACTGTGGCCGGCTGGGT
GTGGCGGACCGCTATCAGGACATAGCGTTGGCTACCCGTGATATTGCTGAAGAGCTTGGC
GGCGAATGGGCTGACCGCTTCCTCGTGCTTTACGGTATCGCCGCTCCCGATTCGCAGCGC
ATCGCCTTCTATCGCCTTCTTGACGAGTTCTTCTGAGCGGGACTCTGGGGTTCGAAATGA
CCGACCAAGCGACGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCAC
AGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAA
CCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCA
CAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGC
GTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATA
CCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTA
TCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCA
GCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGA
CTTATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGG
TGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGACAGTATTTGG
TATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGG
CAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAG
AAAAAAAGGATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGAA
CGAAAACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTAGAT
CCTTTTATAGTCCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAA
ACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGG
TTGCATAGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTG
GTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGC
GTACAATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAA
ACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCTTTTCAGCCTGAT
ACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAG
CGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGG
TAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGG
CTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGA
GTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGC
GGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGG
ATGGCCTTTTTGCGTTTCTACAAACTCTTTTGTTTATTTTTCTAAATACATTCAAATATG
TATCCGCTCAT