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SpecieshumanProduct IDFXC00043Cloning SiteSgfI-PmeISymbolSLC9A6
Alias : MRSA, MRXSCH, NHE6Descriptionsolute carrier family 9, subfamily A (NHE6, cation proton antiporter 6), member 6, transcript variant 2
Length: 2007 bp
Restriction map A
Restriction map B
Genomic Structure
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Length: 669 aa
Result of homology search against CCDS protein database (
FASTA output,
Multiple alignment)
Entry Exp ID% symbol CCDS14654.1 0 100.0 SLC9A6 CCDS83492.1 0 100.0 SLC9A6 CCDS55504.1 0 95.1 SLC9A6 CCDS44003.1 0 95.4 SLC9A6 CCDS33872.1 8e-146 60.2 SLC9A9
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
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Result of InterProScan
Search method interpro_ID From To Entry Definition FPrintScan IPR002090 6 24 PR01088 Na+/H+ exchanger IPR002090 25 43 PR01088 Na+/H+ exchanger IPR002090 44 63 PR01088 Na+/H+ exchanger IPR002090 64 88 PR01088 Na+/H+ exchanger IPR002090 89 107 PR01088 Na+/H+ exchanger IPR002090 108 134 PR01088 Na+/H+ exchanger IPR002090 136 149 PR01088 Na+/H+ exchanger IPR004709 150 161 PR01084 Na+/H+ exchanger IPR004709 164 178 PR01084 Na+/H+ exchanger IPR004709 179 187 PR01084 Na+/H+ exchanger IPR004709 224 234 PR01084 Na+/H+ exchanger IPR002090 267 284 PR01088 Na+/H+ exchanger IPR002090 286 305 PR01088 Na+/H+ exchanger IPR002090 497 523 PR01088 Na+/H+ exchanger IPR002090 524 542 PR01088 Na+/H+ exchanger IPR002090 548 576 PR01088 Na+/H+ exchanger IPR002090 577 604 PR01088 Na+/H+ exchanger IPR002090 609 630 PR01088 Na+/H+ exchanger HMMPfam IPR006153 79 502 PF00999 Cation/H+ exchanger HMMTigr IPR004709 66 512 TIGR00840 Na+/H+ exchanger
Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length SOSUI2 1 24 LMRPLWLLLAVGVFDWAGASD 44 PRIMARY 21 2 73 NLLIFILLLTLTILTIWLFK 92 PRIMARY 20 3 100 HETGLAMIYGLLVGLVLRYGIHV 122 PRIMARY 23 4 142 LLVTFDPEVFFNILLPPIIFYAG 164 SECONDARY 23 5 179 ILAYAFLGTAISCFVIGSIMYGC 201 PRIMARY 23 6 219 DCLLFGAIVSATDPVTVLAIFHE 241 SECONDARY 23 7 250 ALLFGESVLNDAVAIVLSSSIVA 272 SECONDARY 23 8 291 SIGIFLGIFSGSFAMGAATGVVT 313 SECONDARY 23 9 334 FLMSWSTFLLAEAWGFTGVVAVL 356 PRIMARY 23 10 415 VGAFVAIFLGRAANIYPLSLLLN 437 SECONDARY 23 11 483 LLIVFFTVWVFGGGTTAMLSCLH 505 PRIMARY 23
Result of homology search against disease genes in OMIM database(FASTA output,
Multiple alignment)
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_006350 669 300231,300243 100.0 100.0 NP_001317581 617 300231,300243 100.0 92.2 XP_016884714 617 300231,300243 100.0 92.2 NP_001171122 649 300231,300243 95.1 92.2 XP_006724789 649 300231,300243 95.1 92.2 Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.comCloned ORF Nucleotide sequence for pF1KA0267 Download>KIAA0267 2007 bp ATGGCTCGGCGCGGCTGGCGGCGGGCACCCCTCCGCCGTGGCGTCGGCAGCAGTCCCCGA GCCCGCAGGCTCATGCGGCCCCTTTGGTTGCTCCTCGCAGTGGGCGTCTTTGACTGGGCA GGGGCTTCGGACGGCGGCGGCGGAGAGGCTAGAGCCATGGACGAGGAGATCGTGTCCGAG AAGCAAGCCGAGGAGAGCCACCGGCAGGACAGCGCCAACCTGCTCATCTTCATCCTGCTG CTCACCCTCACCATTCTCACAATCTGGCTCTTCAAGCACCGCCGGGCCCGCTTCCTGCAC GAAACCGGCCTGGCTATGATTTATGGTCTTTTGGTGGGCCTTGTGCTTCGGTATGGCATT CATGTTCCGAGTGATGTAAATAATGTGACCCTGAGCTGTGAAGTGCAGTCAAGTCCAACT ACCTTACTGGTTACTTTTGATCCAGAAGTATTTTTCAACATATTACTTCCTCCTATCATA TTTTATGCAGGTTATAGCCTGAAAAGGAGACATTTTTTTCGAAATCTTGGGTCTATCCTA GCATACGCTTTTCTTGGAACAGCAATTTCTTGTTTCGTTATTGGGTCAATAATGTATGGC TGTGTAACGCTGATGAAGGTAACGGGACAACTTGCAGGAGATTTTTACTTTACAGATTGC CTACTGTTTGGTGCCATTGTATCAGCAACTGATCCAGTGACTGTTCTTGCTATATTCCAC GAGCTTCAAGTTGATGTTGAACTCTATGCACTTCTTTTTGGTGAAAGTGTCCTCAATGAT GCTGTTGCCATAGTGCTGTCCTCCTCAATAGTGGCATACCAGCCAGCTGGAGACAACAGT CACACCTTTGATGTCACAGCGATGTTCAAGTCTATTGGGATCTTCCTTGGAATCTTCAGT GGATCTTTTGCAATGGGTGCTGCTACTGGAGTGGTGACAGCTTTAGTGACAAAGTTCACC AAATTACGGGAGTTCCAGTTGTTGGAGACAGGCCTGTTCTTCTTGATGTCCTGGAGTACC TTCCTCTTGGCTGAAGCATGGGGCTTCACAGGTGTAGTTGCAGTATTGTTTTGTGGCATC ACACAAGCACATTATACGTATAATAATTTGTCCACGGAGTCTCAGCATAGAACTAAACAG TTGTTTGAGCTTCTCAATTTCTTGGCAGAGAATTTCATCTTCTCCTACATGGGGCTGACA CTGTTCACCTTCCAGAACCATGTCTTTAACCCAACATTTGTAGTAGGAGCATTTGTTGCT ATTTTCTTGGGAAGAGCTGCCAATATTTACCCCTTGTCCCTCTTACTTAATTTGGGTAGA AGAAGTAAGATTGGATCAAATTTTCAACACATGATGATGTTTGCTGGCCTTCGTGGTGCA ATGGCATTTGCCTTGGCCATTCGAGATACTGCCACTTATGCACGGCAAATGATGTTCAGC ACCACGCTTCTGATTGTGTTTTTTACCGTGTGGGTATTTGGTGGTGGCACCACTGCAATG CTGTCATGCTTGCATATCAGGGTTGGTGTTGATTCAGACCAAGAACACTTGGGTGTTCCT GAAAATGAAAGGAGAACTACCAAAGCAGAGAGTGCTTGGCTTTTCCGGATGTGGTACAAC TTTGATCATAACTATCTGAAGCCTCTGCTGACCCACAGCGGGCCTCCGCTGACAACAACA CTCCCTGCCTGCTGTGGACCCATCGCCAGGTGCCTCACCAGCCCCCAGGCTTACGAAAAC CAGGAACAGTTGAAAGATGATGATTCTGATCTTATTCTCAATGATGGTGACATCAGTTTG ACATATGGAGATTCTACTGTGAACACTGAACCGGCCACATCCAGCGCCCCAAGGAGATTT ATGGGAAACAGTTCTGAAGATGCCTTGGATCGGGAGCTTGCATTTGGGGACCATGAACTG GTCATTCGAGGAACACGCCTGGTTCTTCCAATGGATGATTCTGAACCCCCGCTAAATTTG TTAGATAATACGAGACATGGTCCAGCC
Cloned ORF protein sequence for pF1KA0267 Download>KIAA0267 669 aa MARRGWRRAPLRRGVGSSPRARRLMRPLWLLLAVGVFDWAGASDGGGGEARAMDEEIVSE KQAEESHRQDSANLLIFILLLTLTILTIWLFKHRRARFLHETGLAMIYGLLVGLVLRYGI HVPSDVNNVTLSCEVQSSPTTLLVTFDPEVFFNILLPPIIFYAGYSLKRRHFFRNLGSIL AYAFLGTAISCFVIGSIMYGCVTLMKVTGQLAGDFYFTDCLLFGAIVSATDPVTVLAIFH ELQVDVELYALLFGESVLNDAVAIVLSSSIVAYQPAGDNSHTFDVTAMFKSIGIFLGIFS GSFAMGAATGVVTALVTKFTKLREFQLLETGLFFLMSWSTFLLAEAWGFTGVVAVLFCGI TQAHYTYNNLSTESQHRTKQLFELLNFLAENFIFSYMGLTLFTFQNHVFNPTFVVGAFVA IFLGRAANIYPLSLLLNLGRRSKIGSNFQHMMMFAGLRGAMAFALAIRDTATYARQMMFS TTLLIVFFTVWVFGGGTTAMLSCLHIRVGVDSDQEHLGVPENERRTTKAESAWLFRMWYN FDHNYLKPLLTHSGPPLTTTLPACCGPIARCLTSPQAYENQEQLKDDDSDLILNDGDISL TYGDSTVNTEPATSSAPRRFMGNSSEDALDRELAFGDHELVIRGTRLVLPMDDSEPPLNL LDNTRHGPA
Nucleotide Sequence (with vector) for pF1KA0267 Download>pF1KA0267 5120 bp GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGGCTCGGCGC GGCTGGCGGCGGGCACCCCTCCGCCGTGGCGTCGGCAGCAGTCCCCGAGCCCGCAGGCTC ATGCGGCCCCTTTGGTTGCTCCTCGCAGTGGGCGTCTTTGACTGGGCAGGGGCTTCGGAC GGCGGCGGCGGAGAGGCTAGAGCCATGGACGAGGAGATCGTGTCCGAGAAGCAAGCCGAG GAGAGCCACCGGCAGGACAGCGCCAACCTGCTCATCTTCATCCTGCTGCTCACCCTCACC ATTCTCACAATCTGGCTCTTCAAGCACCGCCGGGCCCGCTTCCTGCACGAAACCGGCCTG GCTATGATTTATGGTCTTTTGGTGGGCCTTGTGCTTCGGTATGGCATTCATGTTCCGAGT GATGTAAATAATGTGACCCTGAGCTGTGAAGTGCAGTCAAGTCCAACTACCTTACTGGTT ACTTTTGATCCAGAAGTATTTTTCAACATATTACTTCCTCCTATCATATTTTATGCAGGT TATAGCCTGAAAAGGAGACATTTTTTTCGAAATCTTGGGTCTATCCTAGCATACGCTTTT CTTGGAACAGCAATTTCTTGTTTCGTTATTGGGTCAATAATGTATGGCTGTGTAACGCTG ATGAAGGTAACGGGACAACTTGCAGGAGATTTTTACTTTACAGATTGCCTACTGTTTGGT GCCATTGTATCAGCAACTGATCCAGTGACTGTTCTTGCTATATTCCACGAGCTTCAAGTT GATGTTGAACTCTATGCACTTCTTTTTGGTGAAAGTGTCCTCAATGATGCTGTTGCCATA GTGCTGTCCTCCTCAATAGTGGCATACCAGCCAGCTGGAGACAACAGTCACACCTTTGAT GTCACAGCGATGTTCAAGTCTATTGGGATCTTCCTTGGAATCTTCAGTGGATCTTTTGCA ATGGGTGCTGCTACTGGAGTGGTGACAGCTTTAGTGACAAAGTTCACCAAATTACGGGAG TTCCAGTTGTTGGAGACAGGCCTGTTCTTCTTGATGTCCTGGAGTACCTTCCTCTTGGCT GAAGCATGGGGCTTCACAGGTGTAGTTGCAGTATTGTTTTGTGGCATCACACAAGCACAT TATACGTATAATAATTTGTCCACGGAGTCTCAGCATAGAACTAAACAGTTGTTTGAGCTT CTCAATTTCTTGGCAGAGAATTTCATCTTCTCCTACATGGGGCTGACACTGTTCACCTTC CAGAACCATGTCTTTAACCCAACATTTGTAGTAGGAGCATTTGTTGCTATTTTCTTGGGA AGAGCTGCCAATATTTACCCCTTGTCCCTCTTACTTAATTTGGGTAGAAGAAGTAAGATT GGATCAAATTTTCAACACATGATGATGTTTGCTGGCCTTCGTGGTGCAATGGCATTTGCC TTGGCCATTCGAGATACTGCCACTTATGCACGGCAAATGATGTTCAGCACCACGCTTCTG ATTGTGTTTTTTACCGTGTGGGTATTTGGTGGTGGCACCACTGCAATGCTGTCATGCTTG CATATCAGGGTTGGTGTTGATTCAGACCAAGAACACTTGGGTGTTCCTGAAAATGAAAGG AGAACTACCAAAGCAGAGAGTGCTTGGCTTTTCCGGATGTGGTACAACTTTGATCATAAC TATCTGAAGCCTCTGCTGACCCACAGCGGGCCTCCGCTGACAACAACACTCCCTGCCTGC TGTGGACCCATCGCCAGGTGCCTCACCAGCCCCCAGGCTTACGAAAACCAGGAACAGTTG AAAGATGATGATTCTGATCTTATTCTCAATGATGGTGACATCAGTTTGACATATGGAGAT TCTACTGTGAACACTGAACCGGCCACATCCAGCGCCCCAAGGAGATTTATGGGAAACAGT TCTGAAGATGCCTTGGATCGGGAGCTTGCATTTGGGGACCATGAACTGGTCATTCGAGGA ACACGCCTGGTTCTTCCAATGGATGATTCTGAACCCCCGCTAAATTTGTTAGATAATACG AGACATGGTCCAGCCGTTTAAACGAATTCGAGCTCGGTACCCGGGGATCCTCTAGAGTCG ACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGC TGCTGCCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGCCTCTAAACGGGTCTTGAG GGGTTTTTTGCTGAAAGGAGGAACTATATCCGGTTCGCTTGCTGTCCATAAAACCGCCCA GTCTAGCTATCGCCATGTAAGCCCACTGCAAGCTACCTGCTTTCTCTTTGCGCTTGCGTT TTCCCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGG ACTGGCTTTCTACGTGTTCCGCTTCCTTTAGCAGCCCTTGCGCCCTGAGTGCTTGCGGCA GCGTGAGCTTCAAAAGAATTGCCAGCTGGGGCGCCCTCTGGTAAGGTTGGGAAGCCCTGC AAAGTAAACTGGATGGCTTTCTTGCCGCCAAGGATCTGATGGCGCAGGGGATCAAGATCT GATCAAGAGACAGGATGACGGTCGTTTCGCATGCTTGAACAAGATGGATTGCACGCAGGT TCTCCGGCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAACAGACAATCGGC TGCTCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTTTGTCAAG ACCGACCTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGGCTATCGTGGCTG GCCACGACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAGCGGGAAGGGAC TGGCTGCTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCACCTTGCTCCTGCC GAGAAAGTATCCATCATGGCTGATGCAATGCGGCGGCTGCATACGCTTGATCCGGCTACC TGCCCATTCGACCACCAAGCGAAACATCGCATCGAGCGAGCACGCACTCGGATGGAAGCC GGTCTTGTCGATCAGGATGATCTGGACGAAGAGCATCAGGGGCTCGCGCCAGCCGAACTG TTCGCCAGGCTCAAGGCGCGTATGCCGGATGGTGAGGATCTCGTCGTGACTCATGGCGAT GCCTGCTTGCCGAATATCATGGTGGAAAATGGCCGCTTTTCTGGATTCATCGACTGTGGC CGGCTGGGTGTGGCGGACCGCTATCAGGACATAGCGTTGGCTACCCGTGATATTGCTGAA GAGCTTGGCGGCGAATGGGCTGACCGCTTCCTCGTGCTTTACGGTATCGCCGCTCCCGAT TCGCAGCGCATCGCCTTCTATCGCCTTCTTGACGAGTTCTTCTGAGCGGGACTCTGGGGT TCGAAATGACCGACCAAGCGACGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAATACG GTTATCCACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAA GGCCAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGA CGAGCATCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAG ATACCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCT TACCGGATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACG CTGTAGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACC CCCCGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGT AAGACACGACTTATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTA TGTAGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGAC AGTATTTGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTC TTGATCCGGCAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGAT TACGCGCAGAAAAAAAGGATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGC TCAGTGGAACGAAAACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCTT CACCTAGATCCTTTTATAGTCCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGG GATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGT ACCCTCTGGTTGCATAGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTT TTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTT TAGCGGTGCGTACAATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCA TCGAGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCTTTT CAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGG CGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAG CGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAA AACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACG CTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCG GAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCA TCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTTTGTTTATTTTTCTAAATACAT TCAAATATGTATCCGCTCAT
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