PHOX2A ORF clone FHC24373

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KOP HaloTag ORF List Flexi search

Halotag ORF Clone FHC24373

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Clone info.

Species

human

Clone Name

pFN21AB7576 Sequence (with vector) Restriction Map

Product ID

FHC24373

ORF Sequence

DNA sequence (852 bp)
Protein sequence (284 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pFN21A Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

Gene

KIBB7576

Symbol

PHOX2A

Alias : ARIX, CFEOM2, FEOM2, NCAM2, PMX2A

Description

paired-like homeobox 2a

Original Clone ID

cs00076

Quality control data of this clone

Description

Characterization of the cloned ORF

5'-end(FN21F1)

3'-end(F1KR)

Agarose gel electrophoretic image

5'/3'-end sequences (chromatogram)

N-terminal HaloTag-fusions expressed in HEK293 visualized by HaloTag TMR ligand

SDS-PAGE

Features of the cloned ORF sequence

Description

Length: 852 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 284 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS8214.1 2.2e-55 100.0 PHOX2A CCDS3463.1 6e-24 55.1 PHOX2B The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition HMMPfam IPR001356 91 147 PF00046 Homeobox HMMSmart IPR001356 90 152 SM00389 Homeobox ProfileScan IPR001356 88 148 PS50071 Homeobox
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_005160 284 602078,602753 100.0 100.0 NP_003915 314 209880,603851,613013 55.1 100.0 NP_115485 325 604529 36.7 83.1 NP_000545 299 120970,268000,602225,613829 37.5 81.7 NP_001306003 230 605726,610362,610381,613757 38.6 85.2 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pFN21AB7576 Download

>KIBB7576  852 bp
ATGGACTACTCCTACCTCAATTCGTACGACTCGTGCGTGGCGGCCATGGAGGCGTCCGCC
TACGGCGACTTTGGCGCCTGCAGCCAGCCCGGCGGCTTCCAATACAGCCCCCTGCGGCCC
GCTTTCCCCGCGGCAGGGCCGCCCTGCCCCGCGCTCGGCTCCTCCAACTGCGCACTTGGC
GCCCTACGCGACCACCAGCCCGCGCCCTACTCGGCAGTGCCCTACAAGTTCTTCCCAGAG
CCATCCGGCCTGCACGAGAAGCGCAAGCAGCGGCGCATCCGCACCACGTTCACCAGCGCG
CAGCTCAAGGAGCTGGAGCGCGTTTTCGCTGAGACCCACTACCCCGACATTTACACGCGT
GAGGAGCTGGCGCTCAAGATCGACCTCACTGAGGCTCGCGTGCAGGTCTGGTTCCAGAAC
CGCCGGGCCAAGTTCCGCAAACAGGAGCGCGCGGCCAGCGCCAAGGGCGCGGCGGGCGCG
GCGGGCGCCAAAAAGGGCGAGGCGCGCTGCTCCTCCGAGGACGACGATTCCAAGGAGTCC
ACGTGCAGCCCCACGCCCGATAGCACCGCCTCGCTGCCGCCGCCGCCTGCGCCCGGCCTG
GCCAGCCCGCGCCTGAGCCCCAGCCCGCTGCCCGTCGCACTGGGCTCCGGGCCGGGACCT
GGGCCGGGGCCACAGCCGCTCAAGGGCGCACTGTGGGCCGGTGTGGCGGGCGGTGGGGGC
GGCGGGCCTGGCGCGGGAGCGGCCGAACTACTTAAGGCTTGGCAGCCGGCGGAGTCCGGC
CCCGGGCCCTTCTCCGGGGTTCTGTCCTCCTTTCACCGGAAGCCCGGCCCCGCCCTGAAG
ACCAATCTCTTC

ORF Protein

Cloned ORF protein sequence for pFN21AB7576 Download

>KIBB7576  284 aa
MDYSYLNSYDSCVAAMEASAYGDFGACSQPGGFQYSPLRPAFPAAGPPCPALGSSNCALG
ALRDHQPAPYSAVPYKFFPEPSGLHEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTR
EELALKIDLTEARVQVWFQNRRAKFRKQERAASAKGAAGAAGAKKGEARCSSEDDDSKES
TCSPTPDSTASLPPPPAPGLASPRLSPSPLPVALGSGPGPGPGPQPLKGALWAGVAGGGG
GGPGAGAAELLKAWQPAESGPGPFSGVLSSFHRKPGPALKTNLF

ORF+Vector

Nucleotide Sequence (with vector) for pFN21AB7576 Download

>pFN21AB7576  5557 bp
TCAATATTGGCCATTAGCCATATTATTCATTGGTTATATAGCATAAATCAATATTGGCTA
TTGGCCATTGCATACGTTGTATCTATATCATAATATGTACATTTATATTGGCTCATGTCC
AATATGACCGCCATGTTGGCATTGATTATTGACTAGTTATTAATAGTAATCAATTACGGG
GTCATTAGTTCATAGCCCATATATGGAGTTCCGCGTTACATAACTTACGGTAAATGGCCC
GCCTGGCTGACCGCCCAACGACCCCCGCCCATTGACGTCAATAATGACGTATGTTCCCAT
AGTAACGCCAATAGGGACTTTCCATTGACGTCAATGGGTGGAGTATTTACGGTAAACTGC
CCACTTGGCAGTACATCAAGTGTATCATATGCCAAGTCCGCCCCCTATTGACGTCAATGA
CGGTAAATGGCCCGCCTGGCATTATGCCCAGTACATGACCTTACGGGACTTTCCTACTTG
GCAGTACATCTACGTATTAGTCATCGCTATTACCATGGTGATGCGGTTTTGGCAGTACAC
CAATGGGCGTGGATAGCGGTTTGACTCACGGGGATTTCCAAGTCTCCACCCCATTGACGT
CAATGGGAGTTTGTTTTGGCACCAAAATCAACGGGACTTTCCAAAATGTCGTAATAACCC
CGCCCCGTTGACGCAAATGGGCGGTAGGCGTGTACGGTGGGAGGTCTATATAAGCAGAGC
TGGTTTAGTGAACCGTCAGATCACTAGAAGCTTTATTGCGGTAGTTTATCACAGTTAAAT
TGCTAACGCAGTCAGTGCTTCTGACACAACAGTCTCGAACTTAAGCTGCAGAAGTTGGTC
GTGAGGCACTGGGCAGGTAAGTATCAAGGTTACAAGACAGGTTTAAGGAGACCAATAGAA
ACTGGGCTTGTCGAGACAGAGAAGACTCTTGCGTTTCTGATAGGCACCTATTGGTCTTAC
TGACATCCACTTTGCCTTTCTCTCCACAGGTGTCCACTCCCAGTTCAATTACAGCTCTTA
AGGCTAGAGTATTAATACGACTCACTATAGGGCTAGCAAAGCCACCATGGCAGAAATCGG
TACTGGCTTTCCATTCGACCCCCATTATGTGGAAGTCCTGGGCGAGCGCATGCACTACGT
CGATGTTGGTCCGCGCGATGGCACCCCTGTGCTGTTCCTGCACGGTAACCCGACCTCCTC
CTACGTGTGGCGCAACATCATCCCGCATGTTGCACCGACCCATCGCTGCATTGCTCCAGA
CCTGATCGGTATGGGCAAATCCGACAAACCAGACCTGGGTTATTTCTTCGACGACCACGT
CCGCTTCATGGATGCCTTCATCGAAGCCCTGGGTCTGGAAGAGGTCGTCCTGGTCATTCA
CGACTGGGGCTCCGCTCTGGGTTTCCACTGGGCCAAGCGCAATCCAGAGCGCGTCAAAGG
TATTGCATTTATGGAGTTCATCCGCCCTATCCCGACCTGGGACGAATGGCCAGAATTTGC
CCGCGAGACCTTCCAGGCCTTCCGCACCACCGACGTCGGCCGCAAGCTGATCATCGATCA
GAACGTTTTTATCGAGGGTACGCTGCCGATGGGTGTCGTCCGCCCGCTGACTGAAGTCGA
GATGGACCATTACCGCGAGCCGTTCCTGAATCCTGTTGACCGCGAGCCACTGTGGCGCTT
CCCAAACGAGCTGCCAATCGCCGGTGAGCCAGCGAACATCGTCGCGCTGGTCGAAGAATA
CATGGACTGGCTGCACCAGTCCCCTGTCCCGAAGCTGCTGTTCTGGGGCACCCCAGGCGT
TCTGATCCCACCGGCCGAAGCCGCTCGCCTGGCCAAAAGCCTGCCTAACTGCAAGGCTGT
GGACATCGGCCCGGGTCTGAATCTGCTGCAAGAAGACAACCCGGACCTGATCGGCAGCGA
GATCGCGCGCTGGCTGTCGACGCTCGAGATTTCCGGCGAGCCAACCACTGAGGATCTGTA
CTTTCAGAGCGATAACGCGATCGCCATGGACTACTCCTACCTCAATTCGTACGACTCGTG
CGTGGCGGCCATGGAGGCGTCCGCCTACGGCGACTTTGGCGCCTGCAGCCAGCCCGGCGG
CTTCCAATACAGCCCCCTGCGGCCCGCTTTCCCCGCGGCAGGGCCGCCCTGCCCCGCGCT
CGGCTCCTCCAACTGCGCACTTGGCGCCCTACGCGACCACCAGCCCGCGCCCTACTCGGC
AGTGCCCTACAAGTTCTTCCCAGAGCCATCCGGCCTGCACGAGAAGCGCAAGCAGCGGCG
CATCCGCACCACGTTCACCAGCGCGCAGCTCAAGGAGCTGGAGCGCGTTTTCGCTGAGAC
CCACTACCCCGACATTTACACGCGTGAGGAGCTGGCGCTCAAGATCGACCTCACTGAGGC
TCGCGTGCAGGTCTGGTTCCAGAACCGCCGGGCCAAGTTCCGCAAACAGGAGCGCGCGGC
CAGCGCCAAGGGCGCGGCGGGCGCGGCGGGCGCCAAAAAGGGCGAGGCGCGCTGCTCCTC
CGAGGACGACGATTCCAAGGAGTCCACGTGCAGCCCCACGCCCGATAGCACCGCCTCGCT
GCCGCCGCCGCCTGCGCCCGGCCTGGCCAGCCCGCGCCTGAGCCCCAGCCCGCTGCCCGT
CGCACTGGGCTCCGGGCCGGGACCTGGGCCGGGGCCACAGCCGCTCAAGGGCGCACTGTG
GGCCGGTGTGGCGGGCGGTGGGGGCGGCGGGCCTGGCGCGGGAGCGGCCGAACTACTTAA
GGCTTGGCAGCCGGCGGAGTCCGGCCCCGGGCCCTTCTCCGGGGTTCTGTCCTCCTTTCA
CCGGAAGCCCGGCCCCGCCCTGAAGACCAATCTCTTCGTTTAAACGAATTCGGGCTCGGT
ACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAG
CCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATAACCCCTTG
GGGCGGCCGCTTCGAGCAGACATGATAAGATACATTGATGAGTTTGGACAAACCACAACT
AGAATGCAGTGAAAAAAATGCTTTATTTGTGAAATTTGTGATGCTATTGCTTTATTTGTA
ACCATTATAAGCTGCAATAAACAAGTTAACAACAACAATTGCATTCATTTTATGTTTCAG
GTTCAGGGGGAGATGTGGGAGGTTTTTTTAAGCAAGTAAAACCTCTACAAATGTGGTAAA
ATCGAATTCTAATGGATCCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAG
CTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTACGTAATGGTTTCT
TAGACGTCAGGTGGCACTTTTCGGGGAAATGTGCGCGGAACCCCTATTTGTTTATTTTTC
TAAATACATTCAAATATGTATCCGCTCATGAGACAATAACCCTGATAAATGCTTCAATAA
TATTGAAAAAGGAAGAGTATGAGTATTCAACATTTCCGTGTCGCCCTTATTCCCTTTTTT
GCGGCATTTTGCCTTCCTGTTTTTGCTCACCCAGAAACGCTGGTGAAAGTAAAAGATGCT
GAAGATCAGTTGGGTGCACGAGTGGGTTACATCGAACTGGATCTCAACAGCGGTAAGATC
CTTGAGAGTTTTCGCCCCGAAGAACGTTTTCCAATGATGAGCACTTTCAAAGTTCTGCTA
TGTGGCGCGGTATTATCCCGTATTGACGCCGGGCAAGAGCAACTCGGTCGCCGCATACAC
TATTCTCAGAATGACTTGGTTGAGTACTCACCAGTCACAGAAAAGCATCTTACGGATGGC
ATGACAGTAAGAGAATTATGCAGTGCTGCCATAACCATGAGTGATAACACTGCGGCCAAC
TTACTTCTGACAACTATCGGAGGACCGAAGGAGCTAACCGCTTTTTTGCACAACATGGGG
GATCATGTAACTCGCCTTGATCGTTGGGAACCGGAGCTGAATGAAGCCATACCAAACGAC
GAGCGTGACACCACGATGCCTGTAGCAATGGCAACAACGTTGCGCAAACTATTAACTGGC
GAACTACTTACTCTAGCTTCCCGGCAACAATTAATAGACTGGATGGAGGCGGATAAAGTT
GCAGGACCACTTCTGCGCTCGGCCCTTCCGGCTGGCTGGTTTATTGCTGATAAATCTGGA
GCCGGTGAGCGTGGGTCTCGCGGTATCATTGCAGCACTGGGGCCAGATGGTAAGCCCTCC
CGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAG
ATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAATTCGAAATGACCGACCAAGCG
ACGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGG
ATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCGTAAAAAGG
CCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAAAAATCGAC
GCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGCGTTTCCCCCTG
GAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCTGTCCGCCT
TTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTATCTCAGTTCGG
TGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCCCGACCGCT
GCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGACTTATCGCCAC
TGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGGTGCTACAGAGT
TCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGACAGTATTTGGTATCTGCGCTC
TGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAACAAACCA
CCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAAAAAAGGAT
TTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGAACGAAAACTCAC
GTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTAGATCCTTTTATAGT
CCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACCATGAAAAA
TGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTGCATAGGTA
TTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCA
TTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTACAATTAAG
GGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACCGCAGTACT
CCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCT