HCRTR1 ORF clone FHC02641

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KOP HaloTag ORF List Flexi search

Halotag ORF Clone FHC02641

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Clone info.

Species

human

Clone Name

pFN21AB8180 Sequence (with vector) Restriction Map

Product ID

FHC02641

Flexi Clone PID

FXC02641

ORF Sequence

DNA sequence (1275 bp)
Protein sequence (425 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pFN21A Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB463762]

Gene

KIBB8180

Symbol

HCRTR1

Alias : ORXR1, OX1R, OXR1

Description

hypocretin (orexin) receptor 1

Original Clone ID

cp00540

Quality control data of this clone

Description

Characterization of the cloned ORF

5'-end(FN21F1)

3'-end(F1KR)

Agarose gel electrophoretic image

5'/3'-end sequences (chromatogram)

N-terminal HaloTag-fusions expressed in HEK293 visualized by HaloTag TMR ligand

SDS-PAGE

Features of the cloned ORF sequence

Description

Length: 1275 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 425 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS344.1 1.2e-146 100.0 HCRTR1 CCDS4956.1 4.9e-95 69.2 HCRTR2 CCDS53539.1 7.5e-21 33.9 NPFFR1 CCDS3552.1 2.5e-20 33.2 NPFFR2 CCDS47072.1 2.5e-20 33.2 NPFFR2 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition FPrintScan IPR000204 19 30 PR01064 Orexin receptor IPR000204 31 47 PR01064 Orexin receptor IPR000276 48 72 PR00237 GPCR IPR000276 81 102 PR00237 GPCR IPR000204 99 115 PR01064 Orexin receptor IPR000276 126 148 PR00237 GPCR IPR000204 151 162 PR01064 Orexin receptor IPR000276 160 181 PR00237 GPCR IPR000204 190 206 PR01064 Orexin receptor IPR000204 206 224 PR01064 Orexin receptor IPR000276 216 239 PR00237 GPCR IPR000204 239 259 PR01064 Orexin receptor IPR004059 253 265 PR01521 Orexin receptor IPR000204 282 298 PR01064 Orexin receptor IPR000276 296 320 PR00237 GPCR IPR000204 321 345 PR01064 Orexin receptor IPR000276 340 366 PR00237 GPCR IPR004059 393 404 PR01521 Orexin receptor IPR004059 405 414 PR01521 Orexin receptor IPR000204 409 422 PR01064 Orexin receptor IPR004059 415 425 PR01521 Orexin receptor HMMPfam IPR000276 63 358 PF00001 GPCR ProfileScan IPR017452 63 358 PS50262 GPCR
Prediction of transmembrane (TM) segments Method No. N terminal transmembrane region C terminal type length SOSUI2 1 48 VLIAAYVAVFVVALVGNTLVCLA 70 PRIMARY 23 2 83 YFIVNLSLADVLVTAICLPASLL 105 PRIMARY 23 3 116 HALCKVIPYLQAVSVSVAVLTLS 138 PRIMARY 23 4 164 SILGIWAVSLAIMVPQAAVMECS 186 PRIMARY 23 5 215 YHSCFFIVTYLAPLGLMAMAYFQ 237 PRIMARY 23 6 299 MLMVVLLVFALCYLPISVLNVL 320 PRIMARY 22
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) XP_016856594 425 602392 100.0 100.0 XP_016856595 425 602392 100.0 100.0 NP_001516 425 602392 100.0 100.0 XP_016856596 389 602392 96.6 89.9 NP_001517 444 602393 69.2 96.2 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pFN21AB8180 Download

>KIBB8180  1275 bp
ATGGAGCCCTCAGCCACCCCAGGGGCTCAGATGGGGGTCCCCCCTGGCAGCAGAGAGCCG
TCCCCTGTGCCTCCAGACTATGAAGATGAGTTTCTCCGCTATCTGTGGCGCGATTATCTG
TACCCAAAACAGTATGAGTGGGTCCTCATCGCAGCCTATGTGGCTGTGTTCGTCGTGGCC
CTGGTGGGCAACACGCTGGTCTGCCTGGCCGTGTGGCGGAACCACCACATGAGGACAGTC
ACCAACTACTTCATTGTCAACCTGTCCCTGGCTGACGTTCTGGTGACTGCTATCTGCCTG
CCGGCCAGCCTGCTGGTGGACATCACTGAGTCCTGGCTGTTCGGCCATGCCCTCTGCAAG
GTCATCCCCTATCTACAGGCTGTGTCCGTGTCAGTGGCAGTGCTAACTCTCAGCTTCATC
GCCCTGGACCGCTGGTATGCCATCTGCCACCCACTATTGTTCAAGAGCACAGCCCGGCGG
GCCCGTGGCTCCATCCTGGGCATCTGGGCTGTGTCGCTGGCCATCATGGTGCCCCAGGCT
GCAGTCATGGAATGCAGCAGTGTGCTGCCTGAGCTAGCCAACCGCACACGGCTCTTCTCA
GTCTGTGATGAACGCTGGGCAGATGACCTCTATCCCAAGATCTACCACAGTTGCTTCTTT
ATTGTCACCTACCTGGCCCCACTGGGCCTCATGGCCATGGCCTATTTCCAGATATTCCGC
AAGCTCTGGGGCCGCCAGATCCCCGGCACCACCTCAGCACTGGTGCGGAACTGGAAGCGC
CCCTCAGACCAGCTGGGGGACCTGGAGCAGGGCCTGAGTGGAGAGCCCCAGCCCCGGGCC
CGCGCCTTCCTGGCTGAAGTGAAGCAGATGCGTGCACGGAGGAAGACAGCCAAGATGCTG
ATGGTGGTGCTGCTGGTCTTCGCCCTCTGCTACCTGCCCATCAGCGTCCTCAATGTCCTT
AAGAGGGTGTTCGGGATGTTCCGCCAAGCCAGTGACCGCGAAGCTGTCTACGCCTGCTTC
ACCTTCTCCCACTGGCTGGTGTACGCCAACAGCGCTGCCAACCCCATCATCTACAACTTC
CTCAGTGGCAAATTCCGGGAGCAGTTTAAGGCTGCCTTCTCCTGCTGCCTGCCTGGCCTG
GGTCCCTGCGGCTCTCTGAAGGCCCCTAGTCCCCGCTCCTCTGCCAGCCACAAGTCCTTG
TCCTTGCAGAGCCGATGCTCCATCTCCAAAATCTCTGAGCATGTGGTGCTCACCAGCGTC
ACCACAGTGCTGCCC

ORF Protein

Cloned ORF protein sequence for pFN21AB8180 Download

>KIBB8180  425 aa
MEPSATPGAQMGVPPGSREPSPVPPDYEDEFLRYLWRDYLYPKQYEWVLIAAYVAVFVVA
LVGNTLVCLAVWRNHHMRTVTNYFIVNLSLADVLVTAICLPASLLVDITESWLFGHALCK
VIPYLQAVSVSVAVLTLSFIALDRWYAICHPLLFKSTARRARGSILGIWAVSLAIMVPQA
AVMECSSVLPELANRTRLFSVCDERWADDLYPKIYHSCFFIVTYLAPLGLMAMAYFQIFR
KLWGRQIPGTTSALVRNWKRPSDQLGDLEQGLSGEPQPRARAFLAEVKQMRARRKTAKML
MVVLLVFALCYLPISVLNVLKRVFGMFRQASDREAVYACFTFSHWLVYANSAANPIIYNF
LSGKFREQFKAAFSCCLPGLGPCGSLKAPSPRSSASHKSLSLQSRCSISKISEHVVLTSV
TTVLP

ORF+Vector

Nucleotide Sequence (with vector) for pFN21AB8180 Download

>pFN21AB8180  5980 bp
TCAATATTGGCCATTAGCCATATTATTCATTGGTTATATAGCATAAATCAATATTGGCTA
TTGGCCATTGCATACGTTGTATCTATATCATAATATGTACATTTATATTGGCTCATGTCC
AATATGACCGCCATGTTGGCATTGATTATTGACTAGTTATTAATAGTAATCAATTACGGG
GTCATTAGTTCATAGCCCATATATGGAGTTCCGCGTTACATAACTTACGGTAAATGGCCC
GCCTGGCTGACCGCCCAACGACCCCCGCCCATTGACGTCAATAATGACGTATGTTCCCAT
AGTAACGCCAATAGGGACTTTCCATTGACGTCAATGGGTGGAGTATTTACGGTAAACTGC
CCACTTGGCAGTACATCAAGTGTATCATATGCCAAGTCCGCCCCCTATTGACGTCAATGA
CGGTAAATGGCCCGCCTGGCATTATGCCCAGTACATGACCTTACGGGACTTTCCTACTTG
GCAGTACATCTACGTATTAGTCATCGCTATTACCATGGTGATGCGGTTTTGGCAGTACAC
CAATGGGCGTGGATAGCGGTTTGACTCACGGGGATTTCCAAGTCTCCACCCCATTGACGT
CAATGGGAGTTTGTTTTGGCACCAAAATCAACGGGACTTTCCAAAATGTCGTAATAACCC
CGCCCCGTTGACGCAAATGGGCGGTAGGCGTGTACGGTGGGAGGTCTATATAAGCAGAGC
TGGTTTAGTGAACCGTCAGATCACTAGAAGCTTTATTGCGGTAGTTTATCACAGTTAAAT
TGCTAACGCAGTCAGTGCTTCTGACACAACAGTCTCGAACTTAAGCTGCAGAAGTTGGTC
GTGAGGCACTGGGCAGGTAAGTATCAAGGTTACAAGACAGGTTTAAGGAGACCAATAGAA
ACTGGGCTTGTCGAGACAGAGAAGACTCTTGCGTTTCTGATAGGCACCTATTGGTCTTAC
TGACATCCACTTTGCCTTTCTCTCCACAGGTGTCCACTCCCAGTTCAATTACAGCTCTTA
AGGCTAGAGTATTAATACGACTCACTATAGGGCTAGCAAAGCCACCATGGCAGAAATCGG
TACTGGCTTTCCATTCGACCCCCATTATGTGGAAGTCCTGGGCGAGCGCATGCACTACGT
CGATGTTGGTCCGCGCGATGGCACCCCTGTGCTGTTCCTGCACGGTAACCCGACCTCCTC
CTACGTGTGGCGCAACATCATCCCGCATGTTGCACCGACCCATCGCTGCATTGCTCCAGA
CCTGATCGGTATGGGCAAATCCGACAAACCAGACCTGGGTTATTTCTTCGACGACCACGT
CCGCTTCATGGATGCCTTCATCGAAGCCCTGGGTCTGGAAGAGGTCGTCCTGGTCATTCA
CGACTGGGGCTCCGCTCTGGGTTTCCACTGGGCCAAGCGCAATCCAGAGCGCGTCAAAGG
TATTGCATTTATGGAGTTCATCCGCCCTATCCCGACCTGGGACGAATGGCCAGAATTTGC
CCGCGAGACCTTCCAGGCCTTCCGCACCACCGACGTCGGCCGCAAGCTGATCATCGATCA
GAACGTTTTTATCGAGGGTACGCTGCCGATGGGTGTCGTCCGCCCGCTGACTGAAGTCGA
GATGGACCATTACCGCGAGCCGTTCCTGAATCCTGTTGACCGCGAGCCACTGTGGCGCTT
CCCAAACGAGCTGCCAATCGCCGGTGAGCCAGCGAACATCGTCGCGCTGGTCGAAGAATA
CATGGACTGGCTGCACCAGTCCCCTGTCCCGAAGCTGCTGTTCTGGGGCACCCCAGGCGT
TCTGATCCCACCGGCCGAAGCCGCTCGCCTGGCCAAAAGCCTGCCTAACTGCAAGGCTGT
GGACATCGGCCCGGGTCTGAATCTGCTGCAAGAAGACAACCCGGACCTGATCGGCAGCGA
GATCGCGCGCTGGCTGTCGACGCTCGAGATTTCCGGCGAGCCAACCACTGAGGATCTGTA
CTTTCAGAGCGATAACGCGATCGCCATGGAGCCCTCAGCCACCCCAGGGGCTCAGATGGG
GGTCCCCCCTGGCAGCAGAGAGCCGTCCCCTGTGCCTCCAGACTATGAAGATGAGTTTCT
CCGCTATCTGTGGCGCGATTATCTGTACCCAAAACAGTATGAGTGGGTCCTCATCGCAGC
CTATGTGGCTGTGTTCGTCGTGGCCCTGGTGGGCAACACGCTGGTCTGCCTGGCCGTGTG
GCGGAACCACCACATGAGGACAGTCACCAACTACTTCATTGTCAACCTGTCCCTGGCTGA
CGTTCTGGTGACTGCTATCTGCCTGCCGGCCAGCCTGCTGGTGGACATCACTGAGTCCTG
GCTGTTCGGCCATGCCCTCTGCAAGGTCATCCCCTATCTACAGGCTGTGTCCGTGTCAGT
GGCAGTGCTAACTCTCAGCTTCATCGCCCTGGACCGCTGGTATGCCATCTGCCACCCACT
ATTGTTCAAGAGCACAGCCCGGCGGGCCCGTGGCTCCATCCTGGGCATCTGGGCTGTGTC
GCTGGCCATCATGGTGCCCCAGGCTGCAGTCATGGAATGCAGCAGTGTGCTGCCTGAGCT
AGCCAACCGCACACGGCTCTTCTCAGTCTGTGATGAACGCTGGGCAGATGACCTCTATCC
CAAGATCTACCACAGTTGCTTCTTTATTGTCACCTACCTGGCCCCACTGGGCCTCATGGC
CATGGCCTATTTCCAGATATTCCGCAAGCTCTGGGGCCGCCAGATCCCCGGCACCACCTC
AGCACTGGTGCGGAACTGGAAGCGCCCCTCAGACCAGCTGGGGGACCTGGAGCAGGGCCT
GAGTGGAGAGCCCCAGCCCCGGGCCCGCGCCTTCCTGGCTGAAGTGAAGCAGATGCGTGC
ACGGAGGAAGACAGCCAAGATGCTGATGGTGGTGCTGCTGGTCTTCGCCCTCTGCTACCT
GCCCATCAGCGTCCTCAATGTCCTTAAGAGGGTGTTCGGGATGTTCCGCCAAGCCAGTGA
CCGCGAAGCTGTCTACGCCTGCTTCACCTTCTCCCACTGGCTGGTGTACGCCAACAGCGC
TGCCAACCCCATCATCTACAACTTCCTCAGTGGCAAATTCCGGGAGCAGTTTAAGGCTGC
CTTCTCCTGCTGCCTGCCTGGCCTGGGTCCCTGCGGCTCTCTGAAGGCCCCTAGTCCCCG
CTCCTCTGCCAGCCACAAGTCCTTGTCCTTGCAGAGCCGATGCTCCATCTCCAAAATCTC
TGAGCATGTGGTGCTCACCAGCGTCACCACAGTGCTGCCCGTTTAAACGAATTCGGGCTC
GGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACA
AAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATAACCCC
TTGGGGCGGCCGCTTCGAGCAGACATGATAAGATACATTGATGAGTTTGGACAAACCACA
ACTAGAATGCAGTGAAAAAAATGCTTTATTTGTGAAATTTGTGATGCTATTGCTTTATTT
GTAACCATTATAAGCTGCAATAAACAAGTTAACAACAACAATTGCATTCATTTTATGTTT
CAGGTTCAGGGGGAGATGTGGGAGGTTTTTTTAAGCAAGTAAAACCTCTACAAATGTGGT
AAAATCGAATTCTAATGGATCCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAG
TAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTACGTAATGGTT
TCTTAGACGTCAGGTGGCACTTTTCGGGGAAATGTGCGCGGAACCCCTATTTGTTTATTT
TTCTAAATACATTCAAATATGTATCCGCTCATGAGACAATAACCCTGATAAATGCTTCAA
TAATATTGAAAAAGGAAGAGTATGAGTATTCAACATTTCCGTGTCGCCCTTATTCCCTTT
TTTGCGGCATTTTGCCTTCCTGTTTTTGCTCACCCAGAAACGCTGGTGAAAGTAAAAGAT
GCTGAAGATCAGTTGGGTGCACGAGTGGGTTACATCGAACTGGATCTCAACAGCGGTAAG
ATCCTTGAGAGTTTTCGCCCCGAAGAACGTTTTCCAATGATGAGCACTTTCAAAGTTCTG
CTATGTGGCGCGGTATTATCCCGTATTGACGCCGGGCAAGAGCAACTCGGTCGCCGCATA
CACTATTCTCAGAATGACTTGGTTGAGTACTCACCAGTCACAGAAAAGCATCTTACGGAT
GGCATGACAGTAAGAGAATTATGCAGTGCTGCCATAACCATGAGTGATAACACTGCGGCC
AACTTACTTCTGACAACTATCGGAGGACCGAAGGAGCTAACCGCTTTTTTGCACAACATG
GGGGATCATGTAACTCGCCTTGATCGTTGGGAACCGGAGCTGAATGAAGCCATACCAAAC
GACGAGCGTGACACCACGATGCCTGTAGCAATGGCAACAACGTTGCGCAAACTATTAACT
GGCGAACTACTTACTCTAGCTTCCCGGCAACAATTAATAGACTGGATGGAGGCGGATAAA
GTTGCAGGACCACTTCTGCGCTCGGCCCTTCCGGCTGGCTGGTTTATTGCTGATAAATCT
GGAGCCGGTGAGCGTGGGTCTCGCGGTATCATTGCAGCACTGGGGCCAGATGGTAAGCCC
TCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGA
CAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAATTCGAAATGACCGACCAA
GCGACGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAG
GGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCGTAAAA
AGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAAAAATC
GACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGCGTTTCCCC
CTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCTGTCCG
CCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTATCTCAGTT
CGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCCCGACC
GCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGACTTATCGC
CACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGGTGCTACAG
AGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGACAGTATTTGGTATCTGCG
CTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAACAAA
CCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAAAAAAG
GATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGAACGAAAACT
CACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTAGATCCTTTTAT
AGTCCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACCATGAA
AAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTGCATAG
GTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGTTG
CCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTACAATT
AAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACCGCAGT
ACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCT