Gene/Protein Characteristic Table for
pF1KA0234
Species
human
Product ID
FXC00039
Linker Type
Cloning Site
SgfI-PmeI
Symbol
JARID1D
Description
Histone demethylase JARID1D (EC 1.14.11.-)(Jumonji/ARID domain-containing protein 1D)(Protein SmcY)(Histocompatibility Y antigen)(H-Y)
Length: 4446 bp
Restriction map A
Restriction map B
Genomic Structure
-
Length: 1482 aa
Result of homology search against nr database (
FASTA output,
Multiple alignment)
Entry Exp ID% Protein Source EAW54663 0 100.0 Smcy homolog, Y... Homo sapiens Q9BY66 0 96.2 Lysine-specific... Homo sapiens AAC50806 0 96.0 SMCY [Homo sapi... Homo sapiens Q5XUN4 0 95.0 Lysine-specific... Pan troglodytes XP_001249801 0 81.6 jumonji, AT ric... Bos taurus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
[ zoom out (x2) ]
Result of InterProScan
Search method interpro_ID From To Entry Definition HMMPfam IPR003349 15 59 PF02375 Transcription factor jumonji IPR001606 76 172 PF01388 AT-rich interaction region IPR001965 259 307 PF00628 Zinc finger IPR013129 434 550 PF02373 Transcription factor jumonji IPR004198 640 693 PF02928 Zinc finger IPR013637 704 1030 PF08429 PLU-1-like IPR001965 1117 1180 PF00628 Zinc finger HMMSmart IPR003349 13 54 SM00545 Transcription factor jumonji IPR001965 259 305 SM00249 Zinc finger IPR003347 401 567 SM00558 Transcription factor jumonji/aspartyl beta-hydroxylase IPR001965 1117 1178 SM00249 Zinc finger ProfileScan IPR003349 14 55 PS51183 Transcription factor jumonji IPR001965 257 307 PS50016 Zinc finger IPR003347 401 567 PS51184 Transcription factor jumonji/aspartyl beta-hydroxylase ScanRegExp IPR001965 260 304 PS01359 Zinc finger IPR001965 1118 1177 PS01359 Zinc finger
Result of homology search against disease genes in OMIM database
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_004644 1539 426000 96.2 100.0 NP_004178 1560 300534,314690 89.6 100.0 NP_005047 1641 180202 71.7 94.9 NP_001036068 1690 180202 71.9 94.9 NP_006609 1544 605393 69.2 98.9 Inquiries or Suggestions ?
Send a message to office AT kazusa.or.jp