Gene/Protein Characteristic Table for pF1KA0234

Species
human

Product ID
FXC00039

Corresponding
HaloTag Clone PID

ORF Sequence
DNA sequence (4446 bp)
Protein sequence (1482 aa)

Linker Type
Flexi type
The extra Val codon is attached to the 3'-end of the ORF, because a Pme I site ...

Cloning Site
SgfI-PmeI

GenBank Accession
ORF sequence is derived from [AB384449]

Gene

Symbol
KDM5D
Alias : HY, HYA, JARID1D, SMCY

Description
lysine (K)-specific demethylase 5D, transcript variant 3

Original Clone ID

Features of the cloned ORF sequence

Length: 4446 bp
Restriction map A Restriction map B
Genomic Structure
Features of the protein sequence

Length: 1482 aa
Result of homology search against nr database ( FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
NP_001140178 0 100.0 lysine-specific...
Homo sapiens
BAA13241 0 100.0 KIAA0234, parti...
Homo sapiens
NP_004644 0 96.2 lysine-specific...
Homo sapiens
AAC50806 0 96.0 SMCY [Homo sapi...
Homo sapiens
ACP43275 0 95.4 jumonji AT rich...
Gorilla gorilla

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
[ zoom out (x2) ] PF02375 PF01388 PF00628 PF02373 PF02928 PF08429 PF00628 SM00545 SM00249 SM00558 SM00249 PS51183 PS50016 PS51184 PS01359 PS01359

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR003349 15 59 PF02375 Transcription factor jumonji
IPR001606 76 172 PF01388 AT-rich interaction region
IPR001965 259 307 PF00628 Zinc finger
IPR013129 434 550 PF02373 Transcription factor jumonji
IPR004198 640 693 PF02928 Zinc finger
IPR013637 704 1030 PF08429 PLU-1-like
IPR001965 1117 1180 PF00628 Zinc finger
HMMSmart IPR003349 13 54 SM00545 Transcription factor jumonji
IPR001965 259 305 SM00249 Zinc finger
IPR003347 401 567 SM00558 Transcription factor jumonji/aspartyl beta-hydroxylase
IPR001965 1117 1178 SM00249 Zinc finger
ProfileScan IPR003349 14 55 PS51183 Transcription factor jumonji
IPR001965 257 307 PS50016 Zinc finger
IPR003347 401 567 PS51184 Transcription factor jumonji/aspartyl beta-hydroxylase
ScanRegExp IPR001965 260 304 PS01359 Zinc finger
IPR001965 1118 1177 PS01359 Zinc finger

Result of homology search against disease genes in OMIM database
(FASTA output, Multiple alignment)
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%)
NP_004644 1539 426000 96.2 100.0
NP_004178 1560 300534,314690 89.6 100.0
NP_005047 1641 180202 71.7 94.9
NP_001036068 1690 180202 71.9 94.9
NP_006609 1544 605393 69.2 98.9
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