Gene/Protein Characteristic Table for FXC11357

Species
human

Product ID
FXC11357

Corresponding
HaloTag Clone PID

ORF Sequence
DNA sequence (1206 bp)
Protein sequence (402 aa)

Linker Type
Flexi type
The extra Val codon is attached to the 3'-end of the ORF, because a Pme I site ...

Cloning Site
SgfI-PmeI

GenBank Accession
ORF sequence is derived from [AB528952]

Gene
KIBB7668

Symbol
LHX5

Description
LIM homeobox 5

Original Clone ID
cs00168

Features of the cloned ORF sequence

Length: 1206 bp
Restriction map A Restriction map B
Genomic Structure
Features of the protein sequence

Length: 402 aa
Result of homology search against nr database ( FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
NP_071758 2.9e-131 100.0 LIM/homeobox pr...
Homo sapiens
XP_001111705 5.2e-131 99.8 LIM/homeobox pr...
Macaca mulatta
NP_001095531 2.1e-130 99.0 LIM/homeobox pr...
Bos taurus
XP_003419329 3.2e-130 99.0 LIM/homeobox pr...
Loxodonta africana
XP_004410433 5.1e-130 98.8 LIM/homeobox pr...
Odobenus rosmar...

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
[ zoom out (x2) ] PD000094 PD000094 PD000010 PR00024 PR00024 PF00412 PF00412 PF00046 SM00132 SM00132 SM00389 PS50023 PS50023 PS50071 PS00478 PS00478 PS00027

Result of InterProScan

Search method interpro_ID From To Entry Definition
BlastProDom IPR001781 4 59 PD000094 Zinc finger
IPR001781 62 119 PD000094 Zinc finger
IPR001356 180 239 PD000010 Homeobox
FPrintScan IPR001356 217 227 PR00024 Homeobox
IPR001356 227 236 PR00024 Homeobox
HMMPfam IPR001781 5 61 PF00412 Zinc finger
IPR001781 64 124 PF00412 Zinc finger
IPR001356 181 237 PF00046 Homeobox
HMMSmart IPR001781 4 55 SM00132 Zinc finger
IPR001781 63 118 SM00132 Zinc finger
IPR001356 180 242 SM00389 Homeobox
ProfileScan IPR001781 3 62 PS50023 Zinc finger
IPR001781 63 125 PS50023 Zinc finger
IPR001356 178 238 PS50071 Homeobox
ScanRegExp IPR001781 5 39 PS00478 Zinc finger
IPR001781 64 99 PS00478 Zinc finger
IPR001356 213 236 PS00027 Homeobox

Result of homology search against disease genes in OMIM database
(FASTA output, Multiple alignment)
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%)
NP_071758 402 605992 100.0 100.0
NP_005559 406 601999 89.9 99.8
NP_203129 390 602146,606606 60.9 98.3
NP_835258 397 262600,600577 61.3 98.0
NP_055379 402 262600,600577 61.3 98.0
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