RAPSN ORF clone FXC03815

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Flexi ORF Clone FXC03815

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Clone info.

Species

human

Clone Name

pF1KB6617 Sequence (with vector) Restriction Map

Product ID

FXC03815

HaloTag Clone PID

FHC03815

ORF Sequence

DNA sequence (1236 bp)
Protein sequence (412 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pF1K Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB527888]

Gene

KIBB6617

Symbol

RAPSN

Alias : CMS11, CMS4C, FADS, FADS2, RAPSYN, RNF205

Description

receptor-associated protein of the synapse, transcript variant 1

Original Clone ID

cs01217

Features of the cloned ORF sequence

Description

Length: 1236 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 412 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS7936.1 4.6e-146 100.0 RAPSN CCDS7937.1 9.2e-91 85.7 RAPSN The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition FPrintScan IPR001237 3 20 PR00217 43kDa postsynaptic protein IPR001237 24 42 PR00217 43kDa postsynaptic protein IPR001237 377 392 PR00217 43kDa postsynaptic protein IPR001237 394 410 PR00217 43kDa postsynaptic protein HMMPfam IPR019568 1 80 PF10579 Rapsyn HMMSmart IPR019734 6 39 SM00028 Tetratricopeptide repeat IPR019734 83 116 SM00028 Tetratricopeptide repeat IPR019734 123 156 SM00028 Tetratricopeptide repeat IPR019734 163 196 SM00028 Tetratricopeptide repeat IPR019734 206 239 SM00028 Tetratricopeptide repeat IPR019734 246 279 SM00028 Tetratricopeptide repeat IPR019734 286 319 SM00028 Tetratricopeptide repeat IPR001841 363 402 SM00184 Zinc finger ProfileScan IPR019734 6 39 PS50005 Tetratricopeptide repeat IPR019734 123 156 PS50005 Tetratricopeptide repeat IPR013026 123 319 PS50293 Tetratricopeptide repeat-containing IPR019734 163 196 PS50005 Tetratricopeptide repeat IPR019734 206 239 PS50005 Tetratricopeptide repeat IPR019734 286 319 PS50005 Tetratricopeptide repeat IPR001841 363 403 PS50089 Zinc finger
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_005046 412 208150,601592,616326 100.0 100.0 XP_005253099 394 208150,601592,616326 95.6 100.0 XP_005253100 371 208150,601592,616326 90.0 100.0 NP_116034 353 208150,601592,616326 85.7 100.0 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pF1KB6617 Download

>KIBB6617  1236 bp
ATGGGGCAGGACCAGACCAAGCAGCAGATCGAGAAGGGGCTCCAGCTGTACCAGTCCAAC
CAGACAGAGAAGGCATTGCAGGTGTGGACAAAGGTGCTGGAGAAGAGCTCGGACCTCATG
GGGCGCTTCCGCGTGCTGGGCTGCCTGGTCACAGCCCACTCGGAGATGGGCCGCTACAAG
GAGATGCTGAAGTTCGCTGTGGTCCAGATCGACACGGCCCGGGAGCTGGAGGATGCCGAC
TTCCTCCTGGAGAGCTACCTGAACCTGGCACGCAGCAACGAGAAGCTGTGCGAGTTTCAC
AAGACCATCTCCTACTGCAAGACCTGCCTTGGGCTGCCTGGTACCAGGGCAGGTGCCCAG
CTCGGAGGCCAGGTCAGCCTGAGCATGGGCAATGCCTTCCTGGGCCTCAGCGTCTTCCAG
AAGGCCCTGGAGAGCTTCGAGAAGGCCCTGCGCTACGCCCACAACAATGATGACGCCATG
CTCGAGTGCCGCGTGTGCTGCAGCCTGGGCAGCTTCTATGCCCAGGTCAAGGACTACGAG
AAAGCCCTGTTCTTCCCCTGCAAGGCGGCAGAGCTTGTCAACAACTATGGCAAAGGCTGG
AGCCTGAAGTACCGGGCCATGAGCCAGTACCACATGGCCGTGGCCTATCGCCTGCTGGGC
CGCCTGGGCAGTGCCATGGAGTGTTGTGAGGAGTCTATGAAGATCGCGCTGCAGCACGGG
GACCGGCCACTGCAGGCGCTCTGCCTGCTCTGCTTCGCTGACATCCACCGGAGCCGTGGG
GACCTGGAGACAGCCTTCCCCAGGTACGACTCCGCCATGAGCATCATGACCGAGATCGGA
AACCGCCTGGGGCAGGTGCAGGCGCTGCTGGGTGTGGCCAAGTGCTGGGTGGCCAGGAAG
GCGCTGGACAAGGCTCTGGATGCCATCGAGAGAGCCCAGGATCTGGCCGAGGAGGTGGGG
AACAAGCTGAGCCAGCTCAAGCTGCACTGTCTGAGCGAGAGCATTTACCGCAGCAAAGGG
CTGCAGCGGGAACTGCGGGCGCACGTTGTGAGGTTCCACGAGTGCGTGGAGGAGACGGAG
CTCTACTGCGGCCTGTGCGGCGAGTCCATAGGCGAGAAGAACAGCCGGCTGCAGGCCCTA
CCCTGCTCCCACATCTTCCACCTCAGGTGCCTGCAGAACAACGGGACCCGGAGCTGTCCC
AACTGCCGCCGCTCATCCATGAAGCCTGGCTTTGTA

ORF Protein

Cloned ORF protein sequence for pF1KB6617 Download

>KIBB6617  412 aa
MGQDQTKQQIEKGLQLYQSNQTEKALQVWTKVLEKSSDLMGRFRVLGCLVTAHSEMGRYK
EMLKFAVVQIDTARELEDADFLLESYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGAQ
LGGQVSLSMGNAFLGLSVFQKALESFEKALRYAHNNDDAMLECRVCCSLGSFYAQVKDYE
KALFFPCKAAELVNNYGKGWSLKYRAMSQYHMAVAYRLLGRLGSAMECCEESMKIALQHG
DRPLQALCLLCFADIHRSRGDLETAFPRYDSAMSIMTEIGNRLGQVQALLGVAKCWVARK
ALDKALDAIERAQDLAEEVGNKLSQLKLHCLSESIYRSKGLQRELRAHVVRFHECVEETE
LYCGLCGESIGEKNSRLQALPCSHIFHLRCLQNNGTRSCPNCRRSSMKPGFV

ORF+Vector

Nucleotide Sequence (with vector) for pF1KB6617 Download

>pF1KB6617  4349 bp
GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA
TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGGGGCAGGAC
CAGACCAAGCAGCAGATCGAGAAGGGGCTCCAGCTGTACCAGTCCAACCAGACAGAGAAG
GCATTGCAGGTGTGGACAAAGGTGCTGGAGAAGAGCTCGGACCTCATGGGGCGCTTCCGC
GTGCTGGGCTGCCTGGTCACAGCCCACTCGGAGATGGGCCGCTACAAGGAGATGCTGAAG
TTCGCTGTGGTCCAGATCGACACGGCCCGGGAGCTGGAGGATGCCGACTTCCTCCTGGAG
AGCTACCTGAACCTGGCACGCAGCAACGAGAAGCTGTGCGAGTTTCACAAGACCATCTCC
TACTGCAAGACCTGCCTTGGGCTGCCTGGTACCAGGGCAGGTGCCCAGCTCGGAGGCCAG
GTCAGCCTGAGCATGGGCAATGCCTTCCTGGGCCTCAGCGTCTTCCAGAAGGCCCTGGAG
AGCTTCGAGAAGGCCCTGCGCTACGCCCACAACAATGATGACGCCATGCTCGAGTGCCGC
GTGTGCTGCAGCCTGGGCAGCTTCTATGCCCAGGTCAAGGACTACGAGAAAGCCCTGTTC
TTCCCCTGCAAGGCGGCAGAGCTTGTCAACAACTATGGCAAAGGCTGGAGCCTGAAGTAC
CGGGCCATGAGCCAGTACCACATGGCCGTGGCCTATCGCCTGCTGGGCCGCCTGGGCAGT
GCCATGGAGTGTTGTGAGGAGTCTATGAAGATCGCGCTGCAGCACGGGGACCGGCCACTG
CAGGCGCTCTGCCTGCTCTGCTTCGCTGACATCCACCGGAGCCGTGGGGACCTGGAGACA
GCCTTCCCCAGGTACGACTCCGCCATGAGCATCATGACCGAGATCGGAAACCGCCTGGGG
CAGGTGCAGGCGCTGCTGGGTGTGGCCAAGTGCTGGGTGGCCAGGAAGGCGCTGGACAAG
GCTCTGGATGCCATCGAGAGAGCCCAGGATCTGGCCGAGGAGGTGGGGAACAAGCTGAGC
CAGCTCAAGCTGCACTGTCTGAGCGAGAGCATTTACCGCAGCAAAGGGCTGCAGCGGGAA
CTGCGGGCGCACGTTGTGAGGTTCCACGAGTGCGTGGAGGAGACGGAGCTCTACTGCGGC
CTGTGCGGCGAGTCCATAGGCGAGAAGAACAGCCGGCTGCAGGCCCTACCCTGCTCCCAC
ATCTTCCACCTCAGGTGCCTGCAGAACAACGGGACCCGGAGCTGTCCCAACTGCCGCCGC
TCATCCATGAAGCCTGGCTTTGTAGTTTAAACGAATTCGAGCTCGGTACCCGGGGATCCT
CTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGC
TGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGCCTCTAAACG
GGTCTTGAGGGGTTTTTTGCTGAAAGGAGGAACTATATCCGGTTCGCTTGCTGTCCATAA
AACCGCCCAGTCTAGCTATCGCCATGTAAGCCCACTGCAAGCTACCTGCTTTCTCTTTGC
GCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCG
TTTCTGCGGACTGGCTTTCTACGTGTTCCGCTTCCTTTAGCAGCCCTTGCGCCCTGAGTG
CTTGCGGCAGCGTGAGCTTCAAAAGAATTGCCAGCTGGGGCGCCCTCTGGTAAGGTTGGG
AAGCCCTGCAAAGTAAACTGGATGGCTTTCTTGCCGCCAAGGATCTGATGGCGCAGGGGA
TCAAGATCTGATCAAGAGACAGGATGACGGTCGTTTCGCATGCTTGAACAAGATGGATTG
CACGCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAACAG
ACAATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTT
TTTGTCAAGACCGACCTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGGCTA
TCGTGGCTGGCCACGACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAGCG
GGAAGGGACTGGCTGCTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCACCTT
GCTCCTGCCGAGAAAGTATCCATCATGGCTGATGCAATGCGGCGGCTGCATACGCTTGAT
CCGGCTACCTGCCCATTCGACCACCAAGCGAAACATCGCATCGAGCGAGCACGCACTCGG
ATGGAAGCCGGTCTTGTCGATCAGGATGATCTGGACGAAGAGCATCAGGGGCTCGCGCCA
GCCGAACTGTTCGCCAGGCTCAAGGCGCGTATGCCGGATGGTGAGGATCTCGTCGTGACT
CATGGCGATGCCTGCTTGCCGAATATCATGGTGGAAAATGGCCGCTTTTCTGGATTCATC
GACTGTGGCCGGCTGGGTGTGGCGGACCGCTATCAGGACATAGCGTTGGCTACCCGTGAT
ATTGCTGAAGAGCTTGGCGGCGAATGGGCTGACCGCTTCCTCGTGCTTTACGGTATCGCC
GCTCCCGATTCGCAGCGCATCGCCTTCTATCGCCTTCTTGACGAGTTCTTCTGAGCGGGA
CTCTGGGGTTCGAAATGACCGACCAAGCGACGCCCAACCGGTATCAGCTCACTCAAAGGC
GGTAATACGGTTATCCACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGG
CCAGCAAAAGGCCAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCG
CCCCCCTGACGAGCATCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGG
ACTATAAAGATACCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGAC
CCTGCCGCTTACCGGATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCA
TAGCTCACGCTGTAGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGT
GCACGAACCCCCCGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTC
CAACCCGGTAAGACACGACTTATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAG
AGCGAGGTATGTAGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACAC
TAGAAGGACAGTATTTGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGT
TGGTAGCTCTTGATCCGGCAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAA
GCAGCAGATTACGCGCAGAAAAAAAGGATTTCAAGAAGATCCTTTGATCTTTTCTACGGG
GTCTGACGCTCAGTGGAACGAAAACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAA
AAGGATCTTCACCTAGATCCTTTTATAGTCCGGAAATACAGGAACGCACGCTGGATGGCC
CTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAAT
GTGGCCTGTACCCTCTGGTTGCATAGGTATTCATACGGTTAAAATTTATCAGGCGCGATT
GCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTG
AACGCGTTTTAGCGGTGCGTACAATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCC
TCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCG
AGATCTTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAA
TTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAA
ACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGC
ATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGT
CGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGC
AACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGC
AGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTTTGTTTATTTTTC
TAAATACATTCAAATATGTATCCGCTCAT