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SpecieshumanProduct IDFXC01263Cloning SiteSgfI-PmeIGeneKIBB3279SymbolPCDHA9
Alias : PCDH-ALPHA9Descriptionprotocadherin alpha 9, transcript variant 1Original Clone IDhk07427
Length: 2850 bp
Restriction map A
Restriction map B
Genomic Structure
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Length: 950 aa
Result of homology search against CCDS protein database (
FASTA output,
Multiple alignment)
Entry Exp ID% symbol CCDS54920.1 0 100.0 PCDHA9 CCDS54916.1 0 84.5 PCDHA4 CCDS54915.1 0 82.6 PCDHA3 CCDS4240.1 0 80.9 PCDHA13 CCDS54913.1 0 80.6 PCDHA1
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
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Result of InterProScan
Search method interpro_ID From To Entry Definition FPrintScan IPR002126 73 92 PR00205 Cadherin IPR002126 242 271 PR00205 Cadherin IPR002126 420 432 PR00205 Cadherin IPR002126 434 453 PR00205 Cadherin IPR002126 453 466 PR00205 Cadherin IPR002126 513 539 PR00205 Cadherin IPR002126 547 564 PR00205 Cadherin HMMPfam IPR013164 29 111 PF08266 Cadherin IPR002126 142 233 PF00028 Cadherin IPR002126 247 340 PF00028 Cadherin IPR002126 357 445 PF00028 Cadherin IPR002126 460 556 PF00028 Cadherin IPR002126 588 669 PF00028 Cadherin HMMSmart IPR002126 45 131 SM00112 Cadherin IPR002126 155 240 SM00112 Cadherin IPR002126 264 348 SM00112 Cadherin IPR002126 372 453 SM00112 Cadherin IPR002126 477 563 SM00112 Cadherin IPR002126 594 676 SM00112 Cadherin ProfileScan IPR002126 8 133 PS50268 Cadherin IPR002126 134 242 PS50268 Cadherin IPR002126 243 350 PS50268 Cadherin IPR002126 351 455 PS50268 Cadherin IPR002126 456 565 PS50268 Cadherin IPR002126 588 678 PS50268 Cadherin
Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length SOSUI2 1 12 QPLLLSLLILAMWVVGSGQLHYS 34 PRIMARY 23 2 698 VYLIIAICAVSSLLVLTLLLYTV 720 PRIMARY 23
Result of homology search against disease genes in OMIM database(FASTA output,
Multiple alignment)
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_114063 950 606315 100.0 100.0 NP_061730 947 606310 84.5 100.0 NP_054724 842 606315 100.0 84.0 NP_061729 950 606309 82.6 100.0 NP_061727 950 606319 80.9 100.0 Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.comCloned ORF Nucleotide sequence for pF1KB3279 Download>KIBB3279 2850 bp ATGTTATACTCAAGTCGAGGAGATCCAGAGGGTCAGCCTCTACTGCTCTCGCTTCTGATC CTCGCAATGTGGGTGGTGGGGAGCGGCCAGCTCCACTACTCCGTCCCGGAGGAAGCCGAA CACGGCACCTTCGTGGGCCGCATCGCGCAGGACCTGGGGCTGGAGCTGGCGGAGCTGGTG CCGCGCCTGTTCCAGTTGGATTCCAAAGGCCGCGGGGACCTTCTGGAGGTAAATCTGCAG AATGGCATTTTGTTTGTGAATTCTCGGATCGACCGCGAGGAGCTGTGCGGGCGGAGCGCG GAGTGCAGCATCCACCTGGAGGTGATCGTAGACAGGCCGCTGCAGGTTTTCCATGTGGAC GTGGAGGTGAAGGACATTAACGACAACCCTCCAGTGTTCCCAGCGACACAAAAGAATCTG TTCATCGCGGAATCCAGGCCGCTTGACTCTCGGTTTCCACTAGAGGGCGCGTCCGATGCA GATATCGGGGAGAACGCCCTGCTCACTTACAGACTGAGCCCCAATGAGTATTTCTTCCTG GACGTGCCAACCAGCAACCAGCAGGTAAAACCTCTTGGACTTGTATTACGGAAACTTTTA GACAGAGAAGAAACTCCGGAGCTTCATTTATTGCTCACGGCCACCGATGGAGGCAAACCC GAGCTGACTGGCACCGTTCAATTACTCATCACGGTACTGGACAACAATGACAATGCCCCA GTGTTCGACAGAACCCTGTATACGGTGAAATTACCAGAAAACGTTTCTATCGGAACGCTG GTGATTCACCCCAATGCCTCAGATTTAGACGAAGGCTTGAATGGGGATATTATTTACTCC TTCTCCAGTGATGTTTCTCCAGATATAAAATCCAAGTTCCACATGGACCCCTTAAGTGGG GCAATCACAGTGATAGGACATATGGATTTTGAAGAAAGTAGAGCACACAAGATCCCAGTC GAGGCTGTCGATAAAGGCTTCCCACCCCTGGCTGGTCATTGTACACTTCTTGTGGAAGTT GTGGATGTAAATGACAATGCTCCACAGTTGACTATCAAAACGCTCTCGGTTCCTGTAAAA GAGGACGCACAACTGGGGACAGTTATTGCCCTGATTAGTGTGATCGACCTAGACGCAGAT GCCAACGGGCAGGTGACCTGCTCCCTGACGCCCCACGTCCCCTTCAAGCTGGTGTCCACC TACAAGAATTACTACTCGTTGGTGCTGGACAGAGCTCTGGACCGCGAGAGTGTGTCCGCC TACGAGCTGGTGGTTACCGCGCGGGACGGGGGCTCGCCTTCACTGTGGGCCACGGCCAGG GTGTCTGTGGAGGTGGCCGACGTGAACGACAACGCACCAGCGTTCGCGCAGTCCGAGTAC ACGGTGTTCGTGAAGGAGAACAACCCGCCGGGCTGCCACATCTTCACGGTGTCTGCGCGG GACGCTGACGCGCAGGAGAACGCCCTGGTGTCCTACTCGCTGGTGGAGCGGCGGTTGGGC GAGCGCTCGCTGTCGAGCTACGTGTCAGTGCACGCGGAGAGCGGCAAGGTGTACGCGCTG CAGCCGTTGGACCACGAGGAGCTGGAGCTGCTACAGTTCCAGGTGAGCGCGCGCGACGCG GGCGTGCCGCCTCTGGGCAGCAACGTGACGCTGCAGGTGTTCGTGCTGGACGAGAACGAC AATGCGCCGGCGCTGCTGACACCTCGGATGAGGGGCACTGACGGCGCAGTGAGCGAGATG GTGCTGCGGTCGGTGGGCGCCGGCGTAGTGGTGGGGAAGGTGCGCGCAGTGGACGCCGAC TCGGGCTACAACGCGTGGCTTTCATACGAGCTGCAGCCAGAAACGGCCAGCGCGAGCATC CCGTTCCGCGTGGGGCTGTACACGGGCGAGATCAGCACAACGCGTGCCCTGGACGAAACG GACGCACCGCGCCAGCGCCTACTGGTGCTGGTGAAAGACCACGGGGAGCCAGCGCTGACG GCCACGGCCACTGTGCTGGTGTCGCTGGTGGAGAGCGGCCAGGCGCCAAAGTCATCGTCG CGGGCGTCAGTGGGTGCCACGGGCCCCGAGGTGACGCTGGTGGATGTCAACGTGTACCTG ATCATCGCCATCTGCGCGGTGTCTAGCCTGTTGGTTCTCACGCTGCTGCTGTACACTGTG CTGCGGTGCTCGGCGATGCCCACCGAGGGCGAGTGCGCGCCTGGCAAGCCGACGCTGGTG TGTTCTAGCGCGGTGGGGAGTTGGTCGTACTCGCAGCAGAGGAGGCAGAGGGTGTGCTCT GGCGAGGGTAAGCAGAAGACCGACCTCATGGCCTTCAGCCCGGGCCTTTCTCCTTGTGCT GGATCTACAGAGCGAACGGGAGAACCCTCTGCTTCCTCAGATTCAACTGGGAAGCCACGA CAGCCCAACCCTGACTGGCGTTACTCTGCCTCCCTGAGAGCAGGCATGCACAGCTCTGTG CACCTAGAGGAGGCTGGCATTCTACGGGCTGGTCCAGGAGGGCCTGATCAGCAGTGGCCA ACAGTATCCAGTGCAACACCAGAACCAGAGGCAGGAGAAGTGTCCCCTCCAGTCGGTGCG GGTGTCAACAGCAACAGCTGGACCTTTAAATACGGACCAGGCAACCCCAAACAATCCGGT CCCGGTGAGTTGCCCGACAAATTCATTATCCCAGGATCTCCTGCAATCATCTCCATCCGG CAGGAGCCTACTAACAGCCAAATTGACAAAAGTGACTTCATAACCTTCGGCAAAAAGGAG GAGACCAAGAAAAAGAAGAAAAAGAAGAAGGGTAACAAGACCCAGGAGAAAAAAGAGAAA GGGAACAGCACGACTGACAACAGTGACCAG
Cloned ORF protein sequence for pF1KB3279 Download>KIBB3279 950 aa MLYSSRGDPEGQPLLLSLLILAMWVVGSGQLHYSVPEEAEHGTFVGRIAQDLGLELAELV PRLFQLDSKGRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVD VEVKDINDNPPVFPATQKNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFL DVPTSNQQVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAP VFDRTLYTVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSG AITVIGHMDFEESRAHKIPVEAVDKGFPPLAGHCTLLVEVVDVNDNAPQLTIKTLSVPVK EDAQLGTVIALISVIDLDADANGQVTCSLTPHVPFKLVSTYKNYYSLVLDRALDRESVSA YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQSEYTVFVKENNPPGCHIFTVSAR DADAQENALVSYSLVERRLGERSLSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA GVPPLGSNVTLQVFVLDENDNAPALLTPRMRGTDGAVSEMVLRSVGAGVVVGKVRAVDAD SGYNAWLSYELQPETASASIPFRVGLYTGEISTTRALDETDAPRQRLLVLVKDHGEPALT ATATVLVSLVESGQAPKSSSRASVGATGPEVTLVDVNVYLIIAICAVSSLLVLTLLLYTV LRCSAMPTEGECAPGKPTLVCSSAVGSWSYSQQRRQRVCSGEGKQKTDLMAFSPGLSPCA GSTERTGEPSASSDSTGKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
Nucleotide Sequence (with vector) for pF1KB3279 Download>pF1KB3279 5963 bp GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGTTATACTCA AGTCGAGGAGATCCAGAGGGTCAGCCTCTACTGCTCTCGCTTCTGATCCTCGCAATGTGG GTGGTGGGGAGCGGCCAGCTCCACTACTCCGTCCCGGAGGAAGCCGAACACGGCACCTTC GTGGGCCGCATCGCGCAGGACCTGGGGCTGGAGCTGGCGGAGCTGGTGCCGCGCCTGTTC CAGTTGGATTCCAAAGGCCGCGGGGACCTTCTGGAGGTAAATCTGCAGAATGGCATTTTG TTTGTGAATTCTCGGATCGACCGCGAGGAGCTGTGCGGGCGGAGCGCGGAGTGCAGCATC CACCTGGAGGTGATCGTAGACAGGCCGCTGCAGGTTTTCCATGTGGACGTGGAGGTGAAG GACATTAACGACAACCCTCCAGTGTTCCCAGCGACACAAAAGAATCTGTTCATCGCGGAA TCCAGGCCGCTTGACTCTCGGTTTCCACTAGAGGGCGCGTCCGATGCAGATATCGGGGAG AACGCCCTGCTCACTTACAGACTGAGCCCCAATGAGTATTTCTTCCTGGACGTGCCAACC AGCAACCAGCAGGTAAAACCTCTTGGACTTGTATTACGGAAACTTTTAGACAGAGAAGAA ACTCCGGAGCTTCATTTATTGCTCACGGCCACCGATGGAGGCAAACCCGAGCTGACTGGC ACCGTTCAATTACTCATCACGGTACTGGACAACAATGACAATGCCCCAGTGTTCGACAGA ACCCTGTATACGGTGAAATTACCAGAAAACGTTTCTATCGGAACGCTGGTGATTCACCCC AATGCCTCAGATTTAGACGAAGGCTTGAATGGGGATATTATTTACTCCTTCTCCAGTGAT GTTTCTCCAGATATAAAATCCAAGTTCCACATGGACCCCTTAAGTGGGGCAATCACAGTG ATAGGACATATGGATTTTGAAGAAAGTAGAGCACACAAGATCCCAGTCGAGGCTGTCGAT AAAGGCTTCCCACCCCTGGCTGGTCATTGTACACTTCTTGTGGAAGTTGTGGATGTAAAT GACAATGCTCCACAGTTGACTATCAAAACGCTCTCGGTTCCTGTAAAAGAGGACGCACAA CTGGGGACAGTTATTGCCCTGATTAGTGTGATCGACCTAGACGCAGATGCCAACGGGCAG GTGACCTGCTCCCTGACGCCCCACGTCCCCTTCAAGCTGGTGTCCACCTACAAGAATTAC TACTCGTTGGTGCTGGACAGAGCTCTGGACCGCGAGAGTGTGTCCGCCTACGAGCTGGTG GTTACCGCGCGGGACGGGGGCTCGCCTTCACTGTGGGCCACGGCCAGGGTGTCTGTGGAG GTGGCCGACGTGAACGACAACGCACCAGCGTTCGCGCAGTCCGAGTACACGGTGTTCGTG AAGGAGAACAACCCGCCGGGCTGCCACATCTTCACGGTGTCTGCGCGGGACGCTGACGCG CAGGAGAACGCCCTGGTGTCCTACTCGCTGGTGGAGCGGCGGTTGGGCGAGCGCTCGCTG TCGAGCTACGTGTCAGTGCACGCGGAGAGCGGCAAGGTGTACGCGCTGCAGCCGTTGGAC CACGAGGAGCTGGAGCTGCTACAGTTCCAGGTGAGCGCGCGCGACGCGGGCGTGCCGCCT CTGGGCAGCAACGTGACGCTGCAGGTGTTCGTGCTGGACGAGAACGACAATGCGCCGGCG CTGCTGACACCTCGGATGAGGGGCACTGACGGCGCAGTGAGCGAGATGGTGCTGCGGTCG GTGGGCGCCGGCGTAGTGGTGGGGAAGGTGCGCGCAGTGGACGCCGACTCGGGCTACAAC GCGTGGCTTTCATACGAGCTGCAGCCAGAAACGGCCAGCGCGAGCATCCCGTTCCGCGTG GGGCTGTACACGGGCGAGATCAGCACAACGCGTGCCCTGGACGAAACGGACGCACCGCGC CAGCGCCTACTGGTGCTGGTGAAAGACCACGGGGAGCCAGCGCTGACGGCCACGGCCACT GTGCTGGTGTCGCTGGTGGAGAGCGGCCAGGCGCCAAAGTCATCGTCGCGGGCGTCAGTG GGTGCCACGGGCCCCGAGGTGACGCTGGTGGATGTCAACGTGTACCTGATCATCGCCATC TGCGCGGTGTCTAGCCTGTTGGTTCTCACGCTGCTGCTGTACACTGTGCTGCGGTGCTCG GCGATGCCCACCGAGGGCGAGTGCGCGCCTGGCAAGCCGACGCTGGTGTGTTCTAGCGCG GTGGGGAGTTGGTCGTACTCGCAGCAGAGGAGGCAGAGGGTGTGCTCTGGCGAGGGTAAG CAGAAGACCGACCTCATGGCCTTCAGCCCGGGCCTTTCTCCTTGTGCTGGATCTACAGAG CGAACGGGAGAACCCTCTGCTTCCTCAGATTCAACTGGGAAGCCACGACAGCCCAACCCT GACTGGCGTTACTCTGCCTCCCTGAGAGCAGGCATGCACAGCTCTGTGCACCTAGAGGAG GCTGGCATTCTACGGGCTGGTCCAGGAGGGCCTGATCAGCAGTGGCCAACAGTATCCAGT GCAACACCAGAACCAGAGGCAGGAGAAGTGTCCCCTCCAGTCGGTGCGGGTGTCAACAGC AACAGCTGGACCTTTAAATACGGACCAGGCAACCCCAAACAATCCGGTCCCGGTGAGTTG CCCGACAAATTCATTATCCCAGGATCTCCTGCAATCATCTCCATCCGGCAGGAGCCTACT AACAGCCAAATTGACAAAAGTGACTTCATAACCTTCGGCAAAAAGGAGGAGACCAAGAAA AAGAAGAAAAAGAAGAAGGGTAACAAGACCCAGGAGAAAAAAGAGAAAGGGAACAGCACG ACTGACAACAGTGACCAGGTTTAAACGAATTCGAGCTCGGTACCCGGGGATCCTCTAGAG TCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTT GGCTGCTGCCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGCCTCTAAACGGGTCTT GAGGGGTTTTTTGCTGAAAGGAGGAACTATATCCGGTTCGCTTGCTGTCCATAAAACCGC CCAGTCTAGCTATCGCCATGTAAGCCCACTGCAAGCTACCTGCTTTCTCTTTGCGCTTGC GTTTTCCCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTG CGGACTGGCTTTCTACGTGTTCCGCTTCCTTTAGCAGCCCTTGCGCCCTGAGTGCTTGCG GCAGCGTGAGCTTCAAAAGAATTGCCAGCTGGGGCGCCCTCTGGTAAGGTTGGGAAGCCC TGCAAAGTAAACTGGATGGCTTTCTTGCCGCCAAGGATCTGATGGCGCAGGGGATCAAGA TCTGATCAAGAGACAGGATGACGGTCGTTTCGCATGCTTGAACAAGATGGATTGCACGCA GGTTCTCCGGCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAACAGACAATC GGCTGCTCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTTTGTC AAGACCGACCTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGGCTATCGTGG CTGGCCACGACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAGCGGGAAGG GACTGGCTGCTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCACCTTGCTCCT GCCGAGAAAGTATCCATCATGGCTGATGCAATGCGGCGGCTGCATACGCTTGATCCGGCT ACCTGCCCATTCGACCACCAAGCGAAACATCGCATCGAGCGAGCACGCACTCGGATGGAA GCCGGTCTTGTCGATCAGGATGATCTGGACGAAGAGCATCAGGGGCTCGCGCCAGCCGAA CTGTTCGCCAGGCTCAAGGCGCGTATGCCGGATGGTGAGGATCTCGTCGTGACTCATGGC GATGCCTGCTTGCCGAATATCATGGTGGAAAATGGCCGCTTTTCTGGATTCATCGACTGT GGCCGGCTGGGTGTGGCGGACCGCTATCAGGACATAGCGTTGGCTACCCGTGATATTGCT GAAGAGCTTGGCGGCGAATGGGCTGACCGCTTCCTCGTGCTTTACGGTATCGCCGCTCCC GATTCGCAGCGCATCGCCTTCTATCGCCTTCTTGACGAGTTCTTCTGAGCGGGACTCTGG GGTTCGAAATGACCGACCAAGCGACGCCCAACCGGACTATAAAAGGATCTAGGTGAAGAT CCTTTTTGATAATCTCATGACCAAAATCCCTTAACGTGAGTTTTCGTTCCACTGAGCGTC AGACCCCGTAGAAAAGATCAAAGGATCTTCTTGAAATCCTTTTTTTCTGCGCGTAATCTG CTGCTTGCAAACAAAAAAACCACCGCTACCAGCGGTGGTTTGTTTGCCGGATCAAGAGCT ACCAACTCTTTTTCCGAAGGTAACTGGCTTCAGCAGAGCGCAGATACCAAATACTGTCCT TCTAGTGTAGCCGTAGTTAGGCCACCACTTCAAGAACTCTGTAGCACCGCCTACATACCT CGCTCTGCTAATCCTGTTACCAGTGGCTGCTGCCAGTGGCGATAAGTCGTGTCTTACCGG GTTGGACTCAAGACGATAGTTACCGGATAAGGCGCAGCGGTCGGGCTGAACGGGGGGTTC GTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGTGA GCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGG CAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTA TAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGG GGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTG CTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTAT TACCGCCTTTGAGTGAGCTGATACCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGC TGGGATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCC TGTACCCTCTGGTTGCATAGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCA GTTTTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCG TTTTAGCGGTGCGTACAATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAG CCATCGAGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCT TTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCC TGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCG TAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAA TAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGA ACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGC CCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGG CCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTTTGTTTATTTTTCTAAATA CATTCAAATATGTATCCGCTCAT
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