Gene/Protein Characteristic Table for FXC00602

Species
human

Product ID
FXC00602

Corresponding
HaloTag Clone PID

ORF Sequence
DNA sequence (3192 bp)
Protein sequence (1064 aa)

Linker Type
Flexi_RBS type
The extra Tyr-Val-Val codons are attached to the 3'-end of the ORF, because ...

Cloning Site
SgfI-PmeI

GenBank Accession
ORF sequence is derived from [AB383952]

Gene

Symbol
KDM4A
Alias : JHDM3A, JMJD2, JMJD2A, TDRD14A

Description
lysine (K)-specific demethylase 4A

Original Clone ID

Features of the cloned ORF sequence

Length: 3192 bp
Restriction map A Restriction map B
Genomic Structure
Features of the protein sequence

Length: 1064 aa
Result of homology search against nr database ( FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
AAH02558 0 100.0 Jumonji domain ...
Homo sapiens
BAA31652 0 100.0 KIAA0677 protei...
Homo sapiens
NP_055478 0 99.9 lysine-specific...
Homo sapiens
XP_003812879 0 99.8 lysine-specific...
Pan paniscus
NP_001125120 0 99.4 lysine-specific...
Pongo abelii

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
[ zoom out (x2) ] PF02375 PF02373 PF00628 SM00545 SM00558 SM00249 SM00249 SM00333 SM00333 PS51183 PS51184

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR003349 15 60 PF02375 Transcription factor jumonji
IPR013129 175 291 PF02373 Transcription factor jumonji
IPR001965 735 769 PF00628 Zinc finger
HMMSmart IPR003349 13 55 SM00545 Transcription factor jumonji
IPR003347 142 308 SM00558 Transcription factor jumonji/aspartyl beta-hydroxylase
IPR001965 709 767 SM00249 Zinc finger
IPR001965 829 885 SM00249 Zinc finger
IPR002999 897 954 SM00333 Tudor
IPR002999 955 1011 SM00333 Tudor
ProfileScan IPR003349 14 56 PS51183 Transcription factor jumonji
IPR003347 142 308 PS51184 Transcription factor jumonji/aspartyl beta-hydroxylase

Result of homology search against disease genes in OMIM database
(FASTA output, Multiple alignment)
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%)
NP_055478 1064 609764 99.9 100.0
NP_055876 1056 605469 77.3 99.8
NP_055830 1096 609765 73.9 100.0
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