HUGE

Gene/Protein Characteristic Table for KIAA1963

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00959
Accession No. :	AB075843
Description :	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2.
HUGO Gene Name :
Clone Name :	ph00179 [Vector Info]
Flexi ORF Clone :	pF1KSDA1963
Source :	Human brain (hippocampus)

Features of the cloned DNA sequence	Description

Length: 6031 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 4450 bp

Genome contig ID gi89161210r_71523637
PolyA signal sequence
(AATAAA,-21)
+----*----+----*----+----*----+----
GCTTGTTAATTCCAAATAAAGTTCTGTGAATCCTG
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
TACATGCCTCTTAATTTTTTAATTCTAATGCTCATTCATTTCGGCTTCAT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 6 r 71623637 71723462 4 99.2 Perfect prediction

Features of the protein sequence	Description

Length: 488 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
Q9NPZ5	2.7e-107	100.0	Galactosylgalac...	Homo sapiens
Q5CAZ6	2.1e-101	94.5	Galactosylgalac...	Canis lupus fam...
CAI68026	8e-100	92.6	beta-3-glucuron...	Bos taurus
P59270	1.4e-95	90.4	Galactosylgalac...	Mus musculus
BAC20343	2.7e-95	90.1	UDP-glucuronylt...	Mus musculus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method interpro_ID From To Entry Definition

BlastProDom NULL 166 265 PD865536 NULL

HMMPfam IPR005027 266 473 PF03360 Glycosyl transferase

Search method	interpro_ID	From	To	Entry	Definition
BlastProDom	NULL	166	265	PD865536	NULL
HMMPfam	IPR005027	266	473	PF03360	Glycosyl transferase

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 167 KSALFTRFFILLPWILIVIIMLD 189 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	167	KSALFTRFFILLPWILIVIIMLD	189	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: AACACCTATAGTCTGGAGCTC

Primer_r
: ATCCACGACGCTTAAATACAG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 6

Experimental conditions

Panel name	: genbank
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	4450 bp
Genome contig ID	gi89161210r_71523637
PolyA signal sequence (AATAAA,-21)	+--------+--------+----*----+---- GCTTGTTAATTCCAAATAAAGTTCTGTGAATCCTG
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* TACATGCCTCTTAATTTTTTAATTCTAATGCTCATTCATTTCGGCTTCAT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	6	r	71623637	71723462	4	99.2	Perfect prediction

Primer_f	: AACACCTATAGTCTGGAGCTC
Primer_r	: ATCCACGACGCTTAAATACAG
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1963

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information