HUGE

Gene/Protein Characteristic Table for KIAA1937

Link to : GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK07615
Accession No. :	AB067524
Description :	Forkhead-associated (Fragment).
HUGO Gene Name :	forkhead-associated (FHA) phosphopeptide binding domain 1 (FHAD1)
Clone Name :	fk04595 [Vector Info]
Source :	Human fetal brain

Features of the cloned DNA sequence	Description

Length: 3515 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
YES

Integrity of 3' end

Length of 3'UTR 1400 bp

Genome contig ID gi89161185f_15440862
PolyA signal sequence
(AAGAAA,-18)
+----*----+----*----+----*----+----
GCACTGGCTGAAAATGAAAGAAAACCTGCAGATTT
Flanking genome sequence
(142781 - 142830)
----+----*----+----*----+----*----+----*----+----*
ACATAATCAGTCCACATGCATTATTCATGGCCTCCCTAGGCACACACAAT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 1 f 15540851 15583641 16 99.8 Terminal No-hit

Features of the protein sequence	Description

Length: 704 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
CAI21428	1.2e-180	99.6	forkhead-associ...	Homo sapiens
XP_513048	1.3e-169	95.2	hypothetical pr...	Pan troglodytes
XP_001088330	3.8e-169	92.9	similar to fork...	Macaca mulatta
BAG59474	5.4e-165	99.8	unnamed protein...	Homo sapiens
B1AJZ9	1.1e-164	91.4	Forkhead-associ...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
D13629	2.4e-05	24.1	KIAA0004
AB020673	0.00063	24.2	KIAA0866

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

None - - - - -

Search method	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 1 VLGGLLLLGVAQLGLFLEEK 20 PRIMARY 20

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	1	VLGGLLLLGVAQLGLFLEEK	20	PRIMARY	20

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: TGCCAGGAGAAGAGGATCAAC

Primer_r
: ACTTGGCTCCTGAGGTATGAC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 1

Experimental conditions

Panel name	: genbank
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	YES

Length of 3'UTR	1400 bp
Genome contig ID	gi89161185f_15440862
PolyA signal sequence (AAGAAA,-18)	+--------+--------+----*----+---- GCACTGGCTGAAAATGAAAGAAAACCTGCAGATTT
Flanking genome sequence (142781 - 142830)	----+--------+--------+--------+--------+----* ACATAATCAGTCCACATGCATTATTCATGGCCTCCCTAGGCACACACAAT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	1	f	15540851	15583641	16	99.8	Terminal No-hit

Primer_f	: TGCCAGGAGAAGAGGATCAAC
Primer_r	: ACTTGGCTCCTGAGGTATGAC
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1937

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information