HUGE

Gene/Protein Characteristic Table for KIAA1838

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :
Accession No. :	AB058741
Description :	family with sequence similarity 120B.
HUGO Gene Name :
Clone Name :	fh26155 [Vector Info]
Flexi ORF Clone :	pF1KA1838
Source :	Human fetal brain

Features of the cloned DNA sequence	Description

Length: 5511 bp
Physical map
Restriction map
The cloned DNA sequence was revised by direct RT-PCR/sequencing experiments following the alert of coding interruption by GeneMark analysis.
Comparison between the cloned and the revised DNA sequences.
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq. revised DNA seq.
Warning for N-terminal truncation:
NO NO

Warning for coding interruption:
YES NO

Integrity of 3' end

Length of 3'UTR 326 bp

Genome contig ID gi89161210f_170368381
PolyA signal sequence
(AATAAA,-20)
+----*----+----*----+----*----+----
CTAATTTCATTTTAAAATAAATGGGAATCTGTTGT
Flanking genome sequence
(187711 - 187760)
----+----*----+----*----+----*----+----*----+----*
ATTCTGATTTTTTATTAGCAACACTAGATTATGAGGGGTTATCTCCTGTT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 6 f 170457822 170556090 11 99.4 Perfect prediction

Features of the protein sequence	Description

Length: 917 aa
This protein sequence is predicted from the revised DNA sequence

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
BAG61736	0	99.9	unnamed protein...	Homo sapiens
BAG57665	0	99.9	unnamed protein...	Homo sapiens
BAG10498	0	99.9	FAM120B protein...	synthetic construct
BAG59317	0	97.5	unnamed protein...	Homo sapiens
XP_001084300	3.3e-213	92.5	similar to regu...	Macaca mulatta

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
D80005	1.9e-10	24.5	KIAA0183

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

BlastProDom IPR004829 390 446 PD153432 Cell surface antigen

ScanRegExp IPR000577 681 693 PS00933 Carbohydrate kinase

Search method	interpro_ID	From	To	Entry	Definition
BlastProDom	IPR004829	390	446	PD153432	Cell surface antigen
ScanRegExp	IPR000577	681	693	PS00933	Carbohydrate kinase

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 720 VESPFQALCCLLIYLFVQVDTLC 742 PRIMARY 23

2 776 AVQLGSLLVRGLTTLVLVNSACG 798 SECONDARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	720	VESPFQALCCLLIYLFVQVDTLC	742	PRIMARY	23
2	776	AVQLGSLLVRGLTTLVLVNSACG	798	SECONDARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: GAGTGGTTTGTGTATCCTGGG

Primer_r
: GGAGGAAAGATTGAAACAGGC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 6

Experimental conditions

Panel name	: unigene
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.	revised DNA seq.
Warning for N-terminal truncation:	NO	NO
Warning for coding interruption:	YES	NO

Length of 3'UTR	326 bp
Genome contig ID	gi89161210f_170368381
PolyA signal sequence (AATAAA,-20)	+--------+--------+----*----+---- CTAATTTCATTTTAAAATAAATGGGAATCTGTTGT
Flanking genome sequence (187711 - 187760)	----+--------+--------+--------+--------+----* ATTCTGATTTTTTATTAGCAACACTAGATTATGAGGGGTTATCTCCTGTT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	6	f	170457822	170556090	11	99.4	Perfect prediction

Primer_f	: GAGTGGTTTGTGTATCCTGGG
Primer_r	: GGAGGAAAGATTGAAACAGGC
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1838

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information