HUGE

Gene/Protein Characteristic Table for KIAA1786

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00918
Accession No. :	AB058689
Description :	Transmembrane protein 132B.
HUGO Gene Name :
Clone Name :	fh19009 [Vector Info]
Flexi ORF Clone :	pF1KSDA1786
Source :	Human fetal brain

Features of the cloned DNA sequence	Description

Length: 5546 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 4342 bp

Genome contig ID gi89161190f_124300204
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
ACCCCAGCCCGGGTGACAGAGCGAGACTCCGTCTC
Flanking genome sequence
(339778 - 339827)
----+----*----+----*----+----*----+----*----+----*
AAAAAAAAAAAAAAAAAAAAAAAAAGAAATACCTGAGACCGGGTAACTTA

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 12 f 124400204 124639980 5 99.1 Perfect prediction

Features of the protein sequence	Description

Length: 400 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
EAW98476	5.5e-173	100.0	transmembrane p...	Homo sapiens
Q14DG7	4.2e-161	96.1	Transmembrane p...	Homo sapiens
EAW98477	4.3e-161	96.1	transmembrane p...	Homo sapiens
XP_543363	3.1e-144	84.6	similar to CG14...	Canis lupus fam...
XP_001103750	6.4e-143	85.9	similar to CG14...	Macaca mulatta

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB046803	2.2e-12	30.5	KIAA1583

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

Motif_DB interpro_ID From To Entry Definition

None - - - - -

Motif_DB	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

- - - - - - -

Method	No.	N terminal	transmembrane region	C terminal	type	length
-	-	-	-	-	-	-

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: TTAAGCAAGAGACAGTTTCGG

Primer_r
: CTATGTGTGCAGGTTTTAAGC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 12

Experimental conditions

Panel name	: genbank
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	4342 bp
Genome contig ID	gi89161190f_124300204
PolyA signal sequence (None)	+--------+--------+----*----+---- ACCCCAGCCCGGGTGACAGAGCGAGACTCCGTCTC
Flanking genome sequence (339778 - 339827)	----+--------+--------+--------+--------+----* AAAAAAAAAAAAAAAAAAAAAAAAAGAAATACCTGAGACCGGGTAACTTA

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	12	f	124400204	124639980	5	99.1	Perfect prediction

Primer_f	: TTAAGCAAGAGACAGTTTCGG
Primer_r	: CTATGTGTGCAGGTTTTAAGC
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1786

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information