HUGE

Gene/Protein Characteristic Table for KIAA1583

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK07142
Accession No. :	AB046803
Description :	Transmembrane protein 132A precursor.
HUGO Gene Name :
Clone Name :	fj06651 [Vector Info]
Source :	Human fetal brain

Features of the cloned DNA sequence	Description

Length: 3981 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 2673 bp

Genome contig ID gi51511727f_60351116
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
CCCCCTTCGCGGCCCACCCGCTGGACGGCGGCCGC
Flanking genome sequence
(107551 - 107600)
----+----*----+----*----+----*----+----*----+----*
CGCCTCACGCACCTGCTTGGCCCCGACTGGCTGCTAGACGTGTCCCACCT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 11 f 60451116 60458665 5 100.0 Perfect prediction

Features of the protein sequence	Description

Length: 435 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
EAW73912	9.8e-170	100.0	transmembrane p...	Homo sapiens
XP_001142704	3.9e-151	99.5	transmembrane p...	Pan troglodytes
XP_001143180	3.4e-150	99.2	transmembrane p...	Pan troglodytes
AAH28106	1.3e-143	100.0	TMEM132A protei...	Homo sapiens
EAW73909	1.6e-143	100.0	transmembrane p...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB058689	6.5e-07	29.9	KIAA1786

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

Motif_DB interpro_ID From To Entry Definition

None - - - - -

Motif_DB	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

- - - - - - -

Method	No.	N terminal	transmembrane region	C terminal	type	length
-	-	-	-	-	-	-

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: CTCCCTCTTATGCCTCTTCAG

Primer_r
: GCTGTAGGAGCAGAAAGGTCT

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 11

Experimental conditions

Panel name	: unigene
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	2673 bp
Genome contig ID	gi51511727f_60351116
PolyA signal sequence (None)	+--------+--------+----*----+---- CCCCCTTCGCGGCCCACCCGCTGGACGGCGGCCGC
Flanking genome sequence (107551 - 107600)	----+--------+--------+--------+--------+----* CGCCTCACGCACCTGCTTGGCCCCGACTGGCTGCTAGACGTGTCCCACCT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	11	f	60451116	60458665	5	100.0	Perfect prediction

Primer_f	: CTCCCTCTTATGCCTCTTCAG
Primer_r	: GCTGTAGGAGCAGAAAGGTCT
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1583

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information