HUGE

Gene/Protein Characteristic Table for KIAA1746

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK02050
Accession No. :	AB051533
Description :	transmembrane and coiled-coil domains 7.
HUGO Gene Name :	transmembrane and coiled-coil domains 7 (TMCO7)
Clone Name :	pj01729 [Vector Info]
Flexi ORF Clone :	pF1KA1746
Source :	Human brain (hippocampus)

Features of the cloned DNA sequence	Description

Length: 4816 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 1519 bp

Genome contig ID gi51511732f_67335010
PolyA signal sequence
(AATAAA,-31)
+----*----+----*----+----*----+----
GTACAATAAAAATGCTTGTTTCTTGGCCTTCCTTT
Flanking genome sequence
(341576 - 341625)
----+----*----+----*----+----*----+----*----+----*
AACTAGACTCCACGCAACCCACTTCAGACCAGCAGATCGAATGTGTTGCA

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 16 f 67435010 67676584 18 99.6 Perfect prediction

Features of the protein sequence	Description

Length: 1098 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
Q9C0B7	100.0	Transmembrane a...	Homo sapiens
XP_001092854	93.1	similar to T16G...	Macaca mulatta
XP_001497099	89.0	transmembrane a...	Equus caballus
BAG53028	100.0	unnamed protein...	Homo sapiens
CAH92918	97.4	hypothetical pr...	Pongo abelii

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR000357 877 913 PF02985 HEAT

IPR000357 956 992 PF02985 HEAT

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR000357	877	913	PF02985	HEAT
IPR000357	956	992	PF02985	HEAT

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 150 QFVLQFVVTLGICPYLMPGVGV 171 PRIMARY 22

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	150	QFVLQFVVTLGICPYLMPGVGV	171	PRIMARY	22

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: AACCTTTGATCCATACCTTCC

Primer_r
: AGCTCTGCGTACTTGAACTTC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 16

Experimental conditions

Panel name	: unigene
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	1519 bp
Genome contig ID	gi51511732f_67335010
PolyA signal sequence (AATAAA,-31)	+--------+--------+----*----+---- GTACAATAAAAATGCTTGTTTCTTGGCCTTCCTTT
Flanking genome sequence (341576 - 341625)	----+--------+--------+--------+--------+----* AACTAGACTCCACGCAACCCACTTCAGACCAGCAGATCGAATGTGTTGCA

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	16	f	67435010	67676584	18	99.6	Perfect prediction

Primer_f	: AACCTTTGATCCATACCTTCC
Primer_r	: AGCTCTGCGTACTTGAACTTC
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1746

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information