HUGE

Gene/Protein Characteristic Table for KIAA1738

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Mapping

Product ID :	ORK01179
Accession No. :	AB051525
Description :	Testis-expressed sequence 2 protein.
HUGO Gene Name :	testis expressed 2 (TEX2)
Clone Name :	pj00192s1 [Vector Info]
Flexi ORF Clone :	pF1KA1738
Source :	Human brain (hippocampus)
Note :	We replaced pj00192, former representative clones for KIAA1738 with pj00192s1. (2001/2/07)

Features of the cloned DNA sequence	Description

Length: 4914 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 1530 bp

Genome contig ID gi51511734r_59478531
PolyA signal sequence
(AATAAA,-22)
+----*----+----*----+----*----+----
CATTGTTTCACAAAATAAATATCTCAATGTCAAAT
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
ACTAGATAAGCATCTAAGTCATTTCTACGGAATCCTGTTCAGATAGGGGC

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 17 r 59578531 59645309 11 99.7 Perfect prediction

Features of the protein sequence	Description

Length: 1127 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
ACE87831	99.9	testis expresse...	synthetic construct
EAW94210	99.4	testis expresse...	Homo sapiens
XP_001160311	99.6	testis expresse...	Pan troglodytes
CAD38927	99.6	hypothetical pr...	Homo sapiens
AAH40521	99.2	Testis expresse...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

ScanRegExp IPR002114 269 284 PS00589 Phosphotransferase system

Search method	interpro_ID	From	To	Entry	Definition
ScanRegExp	IPR002114	269	284	PS00589	Phosphotransferase system

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 469 PELPVKTLGFFIMCVYVYLILPL 491 PRIMARY 23

2 497 GLFLGIGLGFMTAVCVIWFFTP 518 PRIMARY 22

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	469	PELPVKTLGFFIMCVYVYLILPL	491	PRIMARY	23
2	497	GLFLGIGLGFMTAVCVIWFFTP	518	PRIMARY	22

RH mapping information	Description

Chromosome No.

: 17

Experimental conditions

Panel name	: unigene
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	1530 bp
Genome contig ID	gi51511734r_59478531
PolyA signal sequence (AATAAA,-22)	+--------+--------+----*----+---- CATTGTTTCACAAAATAAATATCTCAATGTCAAAT
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* ACTAGATAAGCATCTAAGTCATTTCTACGGAATCCTGTTCAGATAGGGGC

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	17	r	59578531	59645309	11	99.7	Perfect prediction

Gene/Protein Characteristic Table for KIAA1738

Features of the cloned DNA sequence

Features of the protein sequence

RH mapping information