HUGE

Gene/Protein Characteristic Table for KIAA1487

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK04209
Accession No. :	AB040920
Description :	Probable phospholipid-transporting ATPase VD.
HUGO Gene Name :	ATPase, class V, type 10D (ATP10D)
Clone Name :	fj07249 [Vector Info]
Source :	Human fetal brain

Features of the cloned DNA sequence	Description

Length: 3992 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 2037 bp

Genome contig ID gi89161207f_47154940
PolyA signal sequence
(AATATA,-17)
+----*----+----*----+----*----+----
CTTTGCTACAAAAATATTAATATATTTCATTACTG
Flanking genome sequence
(135254 - 135303)
----+----*----+----*----+----*----+----*----+----*
AATGCTAAACTGTATTTCTTTTTAAAATTTGGAAAATTTTTAATTCTGAA

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 4 f 47254940 47290192 12 99.4 Perfect prediction

Features of the protein sequence	Description

Length: 650 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
BAB55221	99.8	unnamed protein...	Homo sapiens
EAW93036	99.8	ATPase, Class V...	Homo sapiens
AAI31536	99.7	ATPase, class V...	Homo sapiens
Q9P241	99.5	Probable phosph...	Homo sapiens
XP_001153968	99.2	ATPase, Class V...	Pan troglodytes

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB018258	1.6e-134	57.7	KIAA0715
AB011138	2.4e-129	54.4	KIAA0566
AB075819	5e-69	35.1	KIAA1939
AB032963	2.1e-67	35.3	KIAA1137
AB028944	5.4e-62	38.0	KIAA1021

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR013200 274 295 PF08282 HAD superfamily hydrolase-like

HMMTigr IPR001757 111 161 TIGR01494 ATPase

IPR001757 251 358 TIGR01494 ATPase

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR013200	274	295	PF08282	HAD superfamily hydrolase-like
HMMTigr	IPR001757	111	161	TIGR01494	ATPase
IPR001757	251	358	TIGR01494	ATPase

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 333 RLSNMILYFFYKNVAYVNLLFWY 355 SECONDARY 23

2 372 LIFFNLLFTSAPPVIYGVLEKDV 394 SECONDARY 23

3 418 HTFWITLLDAFYQSLVCFFVPYF 440 SECONDARY 23

4 456 LNTAALFIVLLHLVIESKSLTWI 478 PRIMARY 23

5 482 VIIGSILSYFLFAIVFGAMCVT 503 PRIMARY 22

6 518 MLDPVFYLVCILTTSIALLPRFV 540 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	333	RLSNMILYFFYKNVAYVNLLFWY	355	SECONDARY	23
2	372	LIFFNLLFTSAPPVIYGVLEKDV	394	SECONDARY	23
3	418	HTFWITLLDAFYQSLVCFFVPYF	440	SECONDARY	23
4	456	LNTAALFIVLLHLVIESKSLTWI	478	PRIMARY	23
5	482	VIIGSILSYFLFAIVFGAMCVT	503	PRIMARY	22
6	518	MLDPVFYLVCILTTSIALLPRFV	540	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: CATGTATGCTGGCTTTAGTTG

Primer_r
: GAGCATGGAGATTCAGGAAGG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 4

Experimental conditions

Panel name	: unigene
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	2037 bp
Genome contig ID	gi89161207f_47154940
PolyA signal sequence (AATATA,-17)	+--------+--------+----*----+---- CTTTGCTACAAAAATATTAATATATTTCATTACTG
Flanking genome sequence (135254 - 135303)	----+--------+--------+--------+--------+----* AATGCTAAACTGTATTTCTTTTTAAAATTTGGAAAATTTTTAATTCTGAA

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	4	f	47254940	47290192	12	99.4	Perfect prediction

Primer_f	: CATGTATGCTGGCTTTAGTTG
Primer_r	: GAGCATGGAGATTCAGGAAGG
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1487

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information