HUGE

Gene/Protein Characteristic Table for KIAA1420

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :
Accession No. :	AB037841
Description :	Probable histone-lysine N-methyltransferase ASH1L.
HUGO Gene Name :
Clone Name :	hk03917 [Vector Info]
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 4518 bp
Physical map
Restriction map
The cloned DNA sequence was revised by direct RT-PCR/sequencing experiments following the alert of coding interruption by GeneMark analysis.
Comparison between the cloned and the revised DNA sequences.
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq. revised DNA seq.
Warning for N-terminal truncation:
NO NO

Warning for coding interruption:
YES NO

Integrity of 3' end

Length of 3'UTR 0 bp

Genome contig ID gi89161185r_153615248
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
TTAGACCCTTTGCACTACATTCGAAAACCTGACTT
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AAAAAAGAAAAGAGGGAGACCCCCTAAGATGAGGGAGGCAATGGCTGAAA

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 1 r 153715248 153798947 3 99.9 Perfect prediction

Features of the protein sequence	Description

Length: 1349 aa
This protein sequence is predicted from the revised DNA sequence

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
CAI12716	100.0	ash1 (absent, s...	Homo sapiens
EAW53068	100.0	ash1 (absent, s...	Homo sapiens
Q9NR48	100.0	Probable histon...	Homo sapiens
AAF68983	100.0	ASH1 [Homo sapi...	Homo sapiens
XP_513861	99.8	ash1 (absent, s...	Pan troglodytes

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB007897	1.3e-25	32.3	KIAA0437

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

Motif_DB interpro_ID From To Entry Definition

None - - - - -

Motif_DB	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

- - - - - - -

Method	No.	N terminal	transmembrane region	C terminal	type	length
-	-	-	-	-	-	-

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: GAAACCTCTACAGTGCTAAGC

Primer_r
: TATTAGTTCCTCCAGCTCTGC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 1

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: GAAACCTCTACAGTGCTAAGC
Primer_r	: TATTAGTTCCTCCAGCTCTGC
PCR product length	: 180 bp
PCR conditions	: 95 °C15 sec62 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.	revised DNA seq.
Warning for N-terminal truncation:	NO	NO
Warning for coding interruption:	YES	NO

Length of 3'UTR	0 bp
Genome contig ID	gi89161185r_153615248
PolyA signal sequence (None)	+--------+--------+----*----+---- TTAGACCCTTTGCACTACATTCGAAAACCTGACTT
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* AAAAAAGAAAAGAGGGAGACCCCCTAAGATGAGGGAGGCAATGGCTGAAA

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	1	r	153715248	153798947	3	99.9	Perfect prediction

Gene/Protein Characteristic Table for KIAA1420

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information